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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011006
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 158 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.407s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0021039.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356525172|ref|XP_003531201.1| chr0 8498988 8499151 +
2 domain predictions
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Lj0g3v0050029.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 16970859 16975533 +
2 domain predictions
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Lj0g3v0108729.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040790 47047766 +
2 domain predictions
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Lj0g3v0108739.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr0 47040916 47047707 +
2 domain predictions
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Lj0g3v0163479.1
n.a. PREDICTED: ethylene receptor 2-like [Cicer arietinum] gi|502115883|ref|XP_004495309.1| chr0 77304936 77309225 +
2 domain predictions
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Lj0g3v0253349.1
n.a. PREDICTED: two-component response regulator-like APRR7-like [Glycine max] gi|356545957|ref|XP_003541399.1| chr0 131543249 131548902 +
2 domain predictions
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Lj0g3v0262279.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 135931975 135936649 -
2 domain predictions
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Lj0g3v0272749.2
n.a. PREDICTED: histidine kinase 1-like [Glycine max] gi|356561130|ref|XP_003548838.1| chr0 141333876 141337466 +
2 domain predictions
 –
Lj0g3v0302219.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr0 157189734 157191341 +
2 domain predictions
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Lj0g3v0327969.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr0 171440048 171440679 -
2 domain predictions
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Lj1g3v0416300.1
n.a. PREDICTED: two-component response regulator ARR15-like [Cicer arietinum] gi|502134002|ref|XP_004501966.1| chr1 5695242 5697660 +
2 domain predictions
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Lj1g3v0416300.2
n.a. PREDICTED: two-component response regulator ARR15-like [Cicer arietinum] gi|502134002|ref|XP_004501966.1| chr1 5695242 5697660 +
2 domain predictions
 –
Lj1g3v0841370.1
n.a. PREDICTED: two-component response regulator ARR9-like [Glycine max] gi|356515915|ref|XP_003526642.1| chr1 10868879 10871985 -
2 domain predictions
 –
Lj1g3v1076690.1
n.a. PREDICTED: two-component response regulator-like PRR95-like [Glycine max] gi|356518667|ref|XP_003528000.1| chr1 13194487 13199352 -
2 domain predictions
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Lj1g3v1137240.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR17-like [Cicer arietinum] gi|502136761|ref|XP_004502823.1| chr1 14124879 14126575 +
2 domain predictions
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Lj1g3v1147290.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR17-like [Cicer arietinum] gi|502136761|ref|XP_004502823.1| chr1 14147367 14149142 -
2 domain predictions
 –
Lj1g3v1147290.2
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR17-like [Cicer arietinum] gi|502136761|ref|XP_004502823.1| chr1 14147367 14149376 -
2 domain predictions
 –
Lj1g3v1798710.1
n.a. Hybrid signal transduction histidine kinase K [Medicago truncatula] gi|357465939|ref|XP_003603254.1| chr1 21715696 21721815 +
2 domain predictions
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Lj1g3v3150020.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X6 [Cicer arietinum] gi|502157433|ref|XP_004510876.1| chr1 35867347 35873862 -
2 domain predictions
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Lj1g3v4170190.1
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502108246|ref|XP_004493425.1| chr1 49523251 49525659 +
2 domain predictions
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Lj1g3v5020740.2
n.a. Ethylene receptor [Medicago truncatula] gi|357512375|ref|XP_003626476.1| chr1 61036440 61040602 -
2 domain predictions
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Lj1g3v5060620.1
n.a. PREDICTED: two-component response regulator-like PRR95-like [Glycine max] gi|356571269|ref|XP_003553801.1| chr1 61881794 61882440 +
2 domain predictions
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Lj2g3v1022310.1
n.a. Sensor protein rcsC [Medicago truncatula] gi|357473535|ref|XP_003607052.1| chr2 16012245 16012556 +
2 domain predictions
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Lj2g3v1079520.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr2 17544243 17546166 -
2 domain predictions
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Lj2g3v1366010.1
n.a. type A response regulator RR1 [Phaseolus vulgaris] gi|125658123|gb|ABN48988.1| chr2 21466831 21468438 -
2 domain predictions
 –
Lj2g3v1681040.1
n.a. PREDICTED: histidine kinase 1-like isoform X2 [Cicer arietinum] gi|502161397|ref|XP_004512150.1| chr2 26074727 26082256 -
2 domain predictions
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Lj2g3v1681040.2
n.a. PREDICTED: histidine kinase 1-like isoform X1 [Cicer arietinum] gi|502161395|ref|XP_004512149.1| chr2 26074727 26084598 -
2 domain predictions
 –
Lj2g3v1985390.1
n.a. PREDICTED: two-component response regulator-like APRR2-like [Glycine max] gi|356540587|ref|XP_003538769.1| chr2 29367611 29374819 -
2 domain predictions
 –
Lj2g3v2925240.1
n.a. PREDICTED: histidine kinase CKI1-like [Cicer arietinum] gi|502118202|ref|XP_004496150.1| chr2 38181600 38186040 +
2 domain predictions
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Lj2g3v3338860.2
n.a. PREDICTED: histidine kinase 2-like [Glycine max] gi|356553458|ref|XP_003545073.1| chr2 42467555 42476518 +
2 domain predictions
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Lj2g3v3338860.3
n.a. PREDICTED: histidine kinase 2-like isoform X1 [Cicer arietinum] gi|502099880|ref|XP_004491582.1| chr2 42472194 42476518 +
2 domain predictions
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Lj3g3v0461750.1
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984353 -
2 domain predictions
 –
Lj3g3v0461750.2
n.a. PREDICTED: ethylene receptor-like [Glycine max] gi|356544214|ref|XP_003540549.1| chr3 4978634 4984648 -
2 domain predictions
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Lj3g3v0765990.1
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502158094|ref|XP_004511028.1| chr3 9115959 9117747 -
2 domain predictions
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Lj3g3v0765990.2
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502158094|ref|XP_004511028.1| chr3 9115959 9117748 -
2 domain predictions
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Lj3g3v1876170.3
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502158094|ref|XP_004511028.1| chr3 24144932 24146608 -
2 domain predictions
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Lj3g3v2517630.1
n.a. PREDICTED: two-component response regulator-like PRR95-like isoform 1 [Glycine max] gi|356520225|ref|XP_003528764.1| chr3 30835070 30838827 +
2 domain predictions
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Lj3g3v2517630.2
n.a. PREDICTED: two-component response regulator-like PRR95-like isoform 1 [Glycine max] gi|356520225|ref|XP_003528764.1| chr3 30835070 30840596 +
2 domain predictions
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Lj4g3v0210320.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr4 2650313 2652097 -
2 domain predictions
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Lj4g3v0668260.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356556600|ref|XP_003546612.1| chr4 10972140 10973962 +
2 domain predictions
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Lj4g3v1154490.2
n.a. PREDICTED: two-component response regulator-like APRR2-like isoform X1 [Cicer arietinum] gi|502152594|ref|XP_004508999.1| chr4 17428155 17436114 -
2 domain predictions
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Lj4g3v1561740.1
n.a. PREDICTED: two-component response regulator ARR5-like [Cicer arietinum] gi|502152207|ref|XP_004508816.1| chr4 23292048 23293154 +
2 domain predictions
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Lj4g3v1561740.2
n.a. PREDICTED: two-component response regulator ARR5-like isoform 1 [Glycine max] gi|356562779|ref|XP_003549646.1| chr4 23292048 23293154 +
2 domain predictions
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Lj4g3v1658890.1
n.a. PREDICTED: two-component response regulator-like APRR1-like isoform X3 [Cicer arietinum] gi|502152014|ref|XP_004508722.1| chr4 24242250 24246621 +
2 domain predictions
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Lj4g3v1658890.2
n.a. PREDICTED: two-component response regulator-like APRR1-like [Glycine max] gi|356513521|ref|XP_003525462.1| chr4 24242250 24251518 +
2 domain predictions
 –
Lj4g3v2573560.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356525172|ref|XP_003531201.1| chr4 34329909 34331646 +
2 domain predictions
 –
Lj4g3v3113240.1
n.a. PREDICTED: two-component response regulator ARR2-like isoform X1 [Cicer arietinum] gi|502123743|ref|XP_004498241.1| chr4 41628829 41631066 +
2 domain predictions
 –
Lj4g3v3113820.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776257 41783546 -
2 domain predictions
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Lj4g3v3113820.3
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776257 41782025 -
2 domain predictions
 –
Lj4g3v3113830.1
n.a. histidine kinase 1 [Lotus japonicus] gi|113911570|gb|ABI48271.1| chr4 41776264 41783055 -
2 domain predictions
 –