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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0086200 |
| Transcript ID | LotjaGi1g1v0086200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD-like repeat-protein; TAIR: AT5G05970.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|B3H5K9|NEDD1_ARATH Protein NEDD1; TrEMBL-Plants: tr|I1JI29|I1JI29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0086200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12483367..12489228) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACAATTGCAAAGATGAATATTTGGCTTCTATCAGTCTTAGTGGGGACCTTATACTTCATAGCCTTGCTTCAGGCCA AAGGGCTGCTGAACTTAAAGATCCCAATCAACAGGTTTTTCTTCTTTGTTTTAAGTGAAATCCTCTGCTTCTTCGTGTTT TGGCTTTGTGTATGTGTATATGGACTAATCTGCCATTTTTGACATTGTAAGACCAGGTGTTGAGAGTTCTTGATTATTCG CGGGTGAATCGCCACCTTCTTGTTACTGCCGGTGATGAGGGGACAGTACATTTGTGGGATACAACTGGTCGCAGTCCCAA GGTATGGGACGTGACAACTCCATGATTATATAACATGCTGCAACATTCTACAGTTGTGAACTTGGTTAATAGTTGAGCAA TCAATTGGTCTTCTATGTTCAAAATAGTAAATTAGTAATTAGTAATAGAGAACAACTTGTACTCGTTAGTCATAACATTT GTCTCTCATAAAACCTTTATAGTCGTGGTTTGATTGTATTGAAAAGCAACTTTTTTTTTCTGTTAGAAATATAATATATA ACCATTCATGTGACCTTTACTCAACATCTTAAGCTTCTGGGATAATTGGTTGTTTGACATGATATCAAAGCCTCTATGAC TAAGTGGTCTAGAGTTGAATCCTTGCCGGCCCCAATACTTCTAAGAAAAAAAAGTTGAATTTAAGCACATGGTATGTGAG CATGTGCATTGTCCACGCTTCTTGCATGAGGGGGCGTGTTAGAAATACAATATAAAACCATTCATGTGGCTTTTACACAA CAACCTAAGCTTTTAGGAATTTAGGATAATTGGATTATCATTTAAACCATGTTTTGGGATCCAAAATTATCTTCAAACAT AAACCCAACCTTAGATTTGTCAACCATGTTAGTTTTTTATGAAACTCGGTTTGAGGCATGTAAACTATTATCTAAACATG CTATTAATAATCAGTTTTGTCTTATTGTAGTTTAACGAATTATCTCTTTATGTAGGAAGTTTTCCTTTTTTGACGTCTCC TTTTTTTGTTATTATTTCAAATGTATACATTGAAATTGACTATATATTTTTCTTTCTTTTCCCTTTGCTTTTGAAAAAAA AGGTTTCTTGGATGAAGCAGCATTCTGCACCAACTGCTGGTATTAGCTTCTCTCCATCCAATGACAAGGTTTCTTTTTTC ATGGATTGTTTTAATTTTATATACATAACGAGGCTGTTTCATTCTGCTGTGAAGTCGTGACCCTTTATGATAAATTTGCT CTCTGATATCTTCCAATTGACAGATCATTGCTAGTGTTGGACTTGATAAAAAATTATACACTTATGACATTGGATCTAGA AGACCATCATCTTGCATTTCTTATGAATCGCCTTTTTCTTCACTGGCCTTTCGAGATGATGGATGGATGCTGGCTGCTGG AACTGGCAATGGCCGTGTGGCATTCTATGATGTCCGCGGAAAACCACAACCTTTTGTTGTTCTTCATGCTTTTGGTAGTT CAGAGGTATTTTTTTGCTTCATTTACAGTGTTTTGTCTTGTCTTCATGGTTTAATGTTTTTAAGCCTTCAATTATTTACT GTTTAATATTTGCCTCACCTGATAATGAGATGTACATGGACTCATGGAAGTGGAAGTATTTGGGAACTACTTTGCATCTA ACACTAGCATAGCATGGACTCTTACCATAAAAAAAAAGAAAAACATAACATGGACTCATGGAACTATGGGGCTTCTTTAA GCTTCCTTAATTGCTTACAGTTAGTTTTTCTTAACCCCAGGTTGGGAGAAGTAGACATCATAAGATGTACAAGATTGATT CGCTTTTCCTCTTTGGTTACAGATGCCTCCTTAGCAATTCCCTTGCTTTACTGTAATGGGTAGGGATGGTACCTTATTTA TGTTTTAATATTCTTGAAACTGGAAGTATTCTGAATAATTGATTGATTATTGATAGATTCAGAAGTACAACATTTATAGA CTAGGCTTCCTAGTCAACTACAAGTCTAAAAAATAAATTCTTATCCTACTATCTACTCGTTTGGATGCAAACCAAAGAGC ACTTATTGGAGCTTATTTAGTGCATTTTCTTGTAGATAAGCTCTTATCTACAAGAAATCTTATCTAAAAGAAAATGCACT AACTTAACGATTTATTTTATCATAATTATATATCTTATCCTAATCTATCATAATAGAATCATAACAGAACAGTTCTATTG TATCTGAATATATCTCAACACTCCCCCCCTCAAGATGGAGCATATAGATCATATGCATCCGGCTTGGAACATATGTGTGA TATCCTTGGACCCCTTGAGGATTTAGTGAAGATATCAACAAGCTGATACTTGGAGCAAACAAAAGAAGTTTTGACAGTGC TCGAAAGAATCTTCTGTCTCTGATAAAATGATAATCAACTTCTACAAACTCAGTCATCTCATGAAATACGCGATTTTGAA GCATAAATTATTCAATAGCTGAAAAATTGTTTCCTGATTTCCTGGTTTTTAACTTCTGATATTTAATTGAATATAGATGT GACCATGAATTGTTTCCCTGATGTGGACTGATTCTGCAAATGCAAAAATGAAGTCAGTCATTTAAAAATAAAAAGTTCTA TCTTTAGCACTATAAAATAAAACTGTTTTAAATTAAGCATTAGTCTTCTGTGATTAGATCAGCAATTTATATCTGAACTA AATTTTCTCTTTTAATACTAAATTATTATAGCGTGCTACAGGCTGTTACGAGCTTATGCTGGCAAAGATCAAAACCAGTT ACTATTGATGAAAGAAATTGCAGTGCTGAGACTGCTCTTGTGGGAGATTCTGTTGAAGATTCAATCCTTATGCCTGATCC CTTACCTTCAGCAACTTCATCAAGTGTTTCCCTATCTACATCAGTGTCTGGTACTAGGAATCCTGGTCGGCTAGGTGCCT CTGTTGAAGCATCTTCACTTATAGCATCAAACAGTGTATTTACATCAAACATGCATAATGTCTCTAATGCTGAGGAAACA CCGCATCGTAACCATTTATGGCCAGGTGGAACCCTTTCAAGGTTGCATGCTCCTCGTGGTAGTTATAACTTAAAGGATGA CATGGAGGTATTCTCCCCTCTTGTGGATGTTCAGCCAATAACACCTTCGCTGTGGAATGAAAGTGGGACAAAGAAGGATA GTTTATATGCAGATAGAAAATCCTTGTTGTTTCCATCATCCATTCGAAGATTTCCAAATTCAGAAGAAGGAATCAGTGAC CATCCAATATCTGATTGGAAATCTGTCTCAACTGCCAAGCAGGTTATTGTCTCTCTAATATTGAGTTTACCCTCTGAAAT ATTGATCTATAAACAAACCTTCAATTTGAAGCGCAATAAATTTTTATAAAATGCCATCCACGCCATTCAGTTAAACATTG TAAATGTGTAGGACTTGAATTCCCTAAGAGGTGTTTGTTTCAAGTCATATAATTTCATTCTCAGAAATGATACTTCCAAG AACTTTATGACAGGGAATGTTATTCCTAGTTAACGTTTCTAAAAATGTTTTTTAAACTAAATTTAATAAAAAAATCAAAA TATGGGAGAAAGAATGTGGTAGAAGGAAGTGGCAGTAGAAGTTGGAAGGTTTTCAGAATATCTTACAGTCTCATGGGAAA ATAACACATCTAACCTCATTATGGGTATTAAAAGCTAGCAAAATATGGCATGTTACTTTCTTGTGCATCAACAGTACCCT GGAGTATTTTGTATAGCTTGTAACAAACATAGAGTCATACAAGTTATGTTTTTTTAAAGCTTGTTTTAAATGTACAGTCA AATTTCCATTGAATAATTACACAAACCTTGAAACAAACACACCCTAATATGCTTGGGGCAGAGAACTTGGTTGTTGAAAA GAGCAGTAAAATTGGTTTTCTTTGATTAGAAATTCATTTCTCTTCCTGTTTTCCTGCCTTGTTAAACTTTGTCATCCAAG AATACTCTTTATTGCCCACTGACTGTTGGCATGGGTTGTTTCAGTTTAATTATCCTTGATCTTATTTGCACCACGAAGAA ACTCTTTTGAGGGCTTATTTTCCAAATTCTTAGCTAAAAGGTTGAATTTCTTTGGGGCCTAGAATTTCTTAGGAGGATTT GATTCATGTGTTTGATCTAACTATAATTTGCAGGAAGCCAATACTATAGAAGATAATCTATTAGACCTGTTTTATATATT GATTCATCAAATCATACCCTAGGTTTTCATGTATAATATGCTGCTTGATTTGAATTCTTTGTTGTATTTGGCAACATTCA TTGTGTTTGGAATAACTAAAATTGGAAATAATTATTTGATTTTTGTTACTTTACATTTGTACTCTTATAAAAGGTAATTT GACAAGGTTAGGAAAGGTAAAATATTTTATTTATTTAAAATCAAGTCAAATGCTGACAAATCCGGTGACCTGATTTCTAA GTTTATAGCAATTATATATCGCAGCCTTTCCCCATGTTAAACCTTTTAAAACAGATGATTTTGATGGACAAGTCATGTTT TTTACATTCCAAACACCCTTGATATTTATTTATGACCAGTTAGATTATCCTCTTTTGACTTATTATATTGCATGCTAACT TGATGTAGGATATTATTCAATCTTCCTTTCCACTTGTGGGGTCAACTCCTCCTCCATCTTCCAAGAGTGAAGATTCTTCC ATCACTCCTCCAGAAGCATGGGGTGGTGAGAAATTGACTGATAAATATACGTACCCAAACCAGCCTGTCAATTTACCATC TCGTTTGGGGATGCTGTCTTCTGCTGGTCAGACAGCAGGATCAATGTTATCTGGAATGCAGGACACACCCTCATCAACAG GTACTATATACTATACCAGTTCGGGTGTAAGTTATGCTAATTTACGTGCCAAGGATGCCTCTGCGAGCCAGGAGACTTCA TCGGGGTTTACTGATCACACGTTCTCTACTTCTTTGCCTTTGTCCATCAATACAAAAACTAGCCTTGGACAGGCAAATAC TGATTCCCCAAGAATCCTTGATTCCCCTAGGATGTCTTTTCCACGAAGATCTACTTATGCTGAAAGAATTAGCACTACAT CTACTTTCAGTGATGGAGTATCTCTTTCAGTTGGTTCACCAAAGATTAAGAAATCAGGAGCAGAAACCAAGGAAGATCTT CTGAATAGTTTGCTGTTGAAGTCTGATATAGCTGCTCTAGCAGAATCAGGCTCTCTACCACTGACAAATGTATGTTATAT TTTACAATTTATATTAGATCTGATTATTGAATTGCATGTAGTTGTATTTGCTTTCAGAAGAGAGTACAGCATTTTTATTG AACTGCCATGTATGGGTTTCATTGATATAGATTGTGTTAGTTTTGGTGATATTCAGATCGCAAATTACTTACTGAATATC TATTGTAATAATCTGTCAATACACATTTTTTTAGTTTTCTTATGTTATTGATTTCTCAAATTTGATAGGGAATACTCTCA CAACAGAAAACATCTCAGTCAGATGCACAACAAGGATCTTCATTTACGCTGCAGCTTTTTCAGCGGACCTTGGAAGAAAC TTTAGATTCCTTTCAGAGATCAATACACGGGGATATTAGAAACCTTCATGTTGAAGTATTACGACAATTTCATCTGCAAG AGGTATGCATCTGGAGTAAGTAATGGTGGTTTCCATATTTCAATTTGTCTCTAATCATTTGTTTCATTCAACAGACGGAA ATGTCAACCATGATGAAGTCCATTCTGGAAAACCAAGCCGAGTTGATGAAAGAAGTGAAGCTTCTTCGTAAGGAAAACCA ACAGCTCCGACAAATGCTTTGA
CDS sequence (LotjaGi1g1v0086200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAATTGCAAAGATGAATATTTGGCTTCTATCAGTCTTAGTGGGGACCTTATACTTCATAGCCTTGCTTCAGGCCA AAGGGCTGCTGAACTTAAAGATCCCAATCAACAGGTGTTGAGAGTTCTTGATTATTCGCGGGTGAATCGCCACCTTCTTG TTACTGCCGGTGATGAGGGGACAGTACATTTGTGGGATACAACTGGTCGCAGTCCCAAGGTTTCTTGGATGAAGCAGCAT TCTGCACCAACTGCTGGTATTAGCTTCTCTCCATCCAATGACAAGATCATTGCTAGTGTTGGACTTGATAAAAAATTATA CACTTATGACATTGGATCTAGAAGACCATCATCTTGCATTTCTTATGAATCGCCTTTTTCTTCACTGGCCTTTCGAGATG ATGGATGGATGCTGGCTGCTGGAACTGGCAATGGCCGTGTGGCATTCTATGATGTCCGCGGAAAACCACAACCTTTTGTT GTTCTTCATGCTTTTGGTAGTTCAGAGGCTGTTACGAGCTTATGCTGGCAAAGATCAAAACCAGTTACTATTGATGAAAG AAATTGCAGTGCTGAGACTGCTCTTGTGGGAGATTCTGTTGAAGATTCAATCCTTATGCCTGATCCCTTACCTTCAGCAA CTTCATCAAGTGTTTCCCTATCTACATCAGTGTCTGGTACTAGGAATCCTGGTCGGCTAGGTGCCTCTGTTGAAGCATCT TCACTTATAGCATCAAACAGTGTATTTACATCAAACATGCATAATGTCTCTAATGCTGAGGAAACACCGCATCGTAACCA TTTATGGCCAGGTGGAACCCTTTCAAGGTTGCATGCTCCTCGTGGTAGTTATAACTTAAAGGATGACATGGAGGTATTCT CCCCTCTTGTGGATGTTCAGCCAATAACACCTTCGCTGTGGAATGAAAGTGGGACAAAGAAGGATAGTTTATATGCAGAT AGAAAATCCTTGTTGTTTCCATCATCCATTCGAAGATTTCCAAATTCAGAAGAAGGAATCAGTGACCATCCAATATCTGA TTGGAAATCTGTCTCAACTGCCAAGCAGGATATTATTCAATCTTCCTTTCCACTTGTGGGGTCAACTCCTCCTCCATCTT CCAAGAGTGAAGATTCTTCCATCACTCCTCCAGAAGCATGGGGTGGTGAGAAATTGACTGATAAATATACGTACCCAAAC CAGCCTGTCAATTTACCATCTCGTTTGGGGATGCTGTCTTCTGCTGGTCAGACAGCAGGATCAATGTTATCTGGAATGCA GGACACACCCTCATCAACAGGTACTATATACTATACCAGTTCGGGTGTAAGTTATGCTAATTTACGTGCCAAGGATGCCT CTGCGAGCCAGGAGACTTCATCGGGGTTTACTGATCACACGTTCTCTACTTCTTTGCCTTTGTCCATCAATACAAAAACT AGCCTTGGACAGGCAAATACTGATTCCCCAAGAATCCTTGATTCCCCTAGGATGTCTTTTCCACGAAGATCTACTTATGC TGAAAGAATTAGCACTACATCTACTTTCAGTGATGGAGTATCTCTTTCAGTTGGTTCACCAAAGATTAAGAAATCAGGAG CAGAAACCAAGGAAGATCTTCTGAATAGTTTGCTGTTGAAGTCTGATATAGCTGCTCTAGCAGAATCAGGCTCTCTACCA CTGACAAATGGAATACTCTCACAACAGAAAACATCTCAGTCAGATGCACAACAAGGATCTTCATTTACGCTGCAGCTTTT TCAGCGGACCTTGGAAGAAACTTTAGATTCCTTTCAGAGATCAATACACGGGGATATTAGAAACCTTCATGTTGAAGTAT TACGACAATTTCATCTGCAAGAGACGGAAATGTCAACCATGATGAAGTCCATTCTGGAAAACCAAGCCGAGTTGATGAAA GAAGTGAAGCTTCTTCGTAAGGAAAACCAACAGCTCCGACAAATGCTTTGA
Protein sequence (LotjaGi1g1v0086200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNCKDEYLASISLSGDLILHSLASGQRAAELKDPNQQVLRVLDYSRVNRHLLVTAGDEGTVHLWDTTGRSPKVSWMKQH SAPTAGISFSPSNDKIIASVGLDKKLYTYDIGSRRPSSCISYESPFSSLAFRDDGWMLAAGTGNGRVAFYDVRGKPQPFV VLHAFGSSEAVTSLCWQRSKPVTIDERNCSAETALVGDSVEDSILMPDPLPSATSSSVSLSTSVSGTRNPGRLGASVEAS SLIASNSVFTSNMHNVSNAEETPHRNHLWPGGTLSRLHAPRGSYNLKDDMEVFSPLVDVQPITPSLWNESGTKKDSLYAD RKSLLFPSSIRRFPNSEEGISDHPISDWKSVSTAKQDIIQSSFPLVGSTPPPSSKSEDSSITPPEAWGGEKLTDKYTYPN QPVNLPSRLGMLSSAGQTAGSMLSGMQDTPSSTGTIYYTSSGVSYANLRAKDASASQETSSGFTDHTFSTSLPLSINTKT SLGQANTDSPRILDSPRMSFPRRSTYAERISTTSTFSDGVSLSVGSPKIKKSGAETKEDLLNSLLLKSDIAALAESGSLP LTNGILSQQKTSQSDAQQGSSFTLQLFQRTLEETLDSFQRSIHGDIRNLHVEVLRQFHLQETEMSTMMKSILENQAELMK EVKLLRKENQQLRQML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 198 | 198 | 6.9E-28 | ||
| PANTHER | 1 | 656 | 656 | 0.0 | – | |
| SUPERFAMILY | 5 | 177 | 173 | 5.34E-28 | ||
| SMART | 25 | 66 | 42 | 0.71 | ||
| ProSiteProfiles | 33 | 119 | 87 | 10.944 | ||
| SMART | 70 | 110 | 41 | 0.15 | ||
| SMART | 113 | 151 | 39 | 0.54 | ||
| MobiDBLite | 211 | 230 | 20 | - | – | |
| MobiDBLite | 211 | 231 | 21 | - | – | |
| MobiDBLite | 363 | 400 | 38 | - | – | |
| MobiDBLite | 363 | 381 | 19 | - | – | |
| Coils | 628 | 655 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0086200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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