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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0087500 |
| Transcript ID | LotjaGi1g1v0087500.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arf guanine-nucleotide exchange factor gnom; TAIR: AT1G13980.1 sec7 domain-containing protein; Swiss-Prot: sp|Q42510|GNOM_ARATH ARF guanine-nucleotide exchange factor GNOM; TrEMBL-Plants: tr|V7D1N8|V7D1N8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0087500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12680267..12686244) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAAGTGGAAAAACAGAAGAAGAGAGGGTATGAAGAAGAGAAAAGAAAGAGATTTGAAGGAGGGAAAGAAAGAAA GAAAGAAAAACCGCCACAAACAATGGCGAGACTGGTGACTCAGTGATGCAATGTAACTCGCTCCGATTCCTCGACTCAGC TGAGCTCACCATCTTCGTAAGCCATCTTTCTTCTCCATCTTCCTCTTCATTCTTCCCTTTTTCAAGTTTTCTCTGTCTCA ATTCACTTCAATGCTTCGGAATCGAAGCCTAACCAGACACACTGTTCAAAACTAAATTCTGAGTTGAAACCCAGTTCAAT TTCCCCATGAATTGTGTTCTAATGAATTATGAAAGTGAACATTGTGTGAGAGAGTGAGGATCATGTTTTATAGAGATGCA AGAGAAGTTGTCTAGGTGAAAATAATCGATTTAGGATCAAATTGTAGTTGTGGTCTCTTTTTTAGATCATTTTCAAGACC CCATTTTGTGATATTTGTTAATGATGTTTTGGATTCAATGTTTCCAATGTAAAAATTTGATCTTTTTTTTAAAGTCAAAT TGAAGTCAATGCCCCTTTCTATTGTGTATTTTTGAATTTGATAATGGTGGTGACGGAGGGTTGGAATTTATCTGTTGATT ATGAGTTTGACATGATTGGGTAGGTTATGTTGTATTAGGAGGGACTGAGGGAGTGCTTCTTTTTGGATAGTCATGATAAT GTGGTTGAATGTGAGGTGATCCAATTCAGAGCAGTGTTGTCAAATAGCGGTTACAGACTTACAGTGGTGCTATAGCGTAA TGCTCTGAGGGCTCACGACTTTCCGCTATTGTCTGCTATGAGGGCTTAAAATAGCGGATTTTTGGCTTTCCGCCATTTTC CACAATCCGTGTTTAACAACAACTAAGAAAGATGTGTGTGGTGGAGGTGGAGTCCTGCTTCTGCATTTGAGACAGAGGGT GTTGTTGTATTCTGTTTTTGGTATACAATTGTGACAATGAAGGTTGAATCTAAGATCGTGTGCGAACTACTCAAGTCTCT CACTGCTAGCCCAATCTTAGTAGGTTGAGGATGCTGTGATCTTTGGTTTAGACAGTTAAAATTATCATTTTGTGTGGATT TACCAATGCCATATTTGAATATTTCACGCAATTATGATCCTGCTTTTGTATGTGCATGATTGTGTGTGCTTACTGCTTAG TGTTTAGAGAAATGCTAACAGCAAACTCTTTCCAACATACGCTCAATTATTGGGCATATTTCATGTGGGTCACACTAAAA TGAAACCGGGCCTGAGATTTTTGTGTTCAACATGTATGCACTATGTTGATCAATTTGGATGATTCTTAGGTTGCATTTCA TATGTTTATTTTTTTTTCATGGTATTTTAGTTAGTTGCTGGCAGATTCGTTTGTATTTTTTGTCTCTCTTTTTTATTTCA AAGTATGTTTTCCCAAGGGATTATGTTTCTTAAGGTGTTATGTTGTCAAACCTCCACCAGATCCTTTCTGTTCAAAGAGT ATTGTGAAAATGGGACGTCTAAGGCTTCAAGCTGCTATTAATGCAATAGAGGAGGAGCCTGAGGAGTGTTATGCTGCATA TCCTCACAAAACAACTTTAGCAAGCATGATCAATTCAGAAATTGGTGCTATTTTGGCAGTCATGCAAAGAAATGTAAGAT GGGGAGGGCACTATATCTCAGGGGATGAGCAGATGGAGAACACTCTGATTCAGTCTTTGAAGTCACTAAGGAAACAAATC TTTTCATGGAAGAATCCTTGGCATGCTATTAACCCTACCTTGTATCTCCAGCCATTTCTGGATGTGATTCGATCAGATGA GACTAGTGCATCAATTACAGGTGCTGCTTTGTCATCTGTTTACAAGATCTTAACTCTGGATGTGATTGATCAAAATACTG TCAATATTGAGGATGCCATGCATTTGGTGGTTGATGCTGTCACTAGCTGCAGATTTGAGGTGACTGATCCTGCATCAGAA GAAGTTGTTTTAATGAAGATACTTCAAGTTCTCCTGGCATGTATGAAAAGTAAAGCATCTACAATGCTAAGTAACCAACA TGTTTGCACCATAGTTAATACGTGTTTTCGGATAGCTCATCAGGCCAGAACCAGAGGTGAGTTGTTGCAGCAGATAGCAC GGTATACAGTGCATGAGCTTGTTAGGTGTATCTTCTCACACCTTCAAGATGTCAACAAGACACAACATGCATTGATTAGT GGAAGCTCTACTTTGAAACAAGAGGTACACAATTCATGTTACCTTATAGATTACATTCTTGTTTTTCATTTAATCATTTT TCCTTTTATGCAAAACTACTAGACTAGTACTATGCTATAAGTTATTGGCTCTGTTTGCAATTTGTTGAATCATCTATAGA AGAAAGCTTCACTTCTCTTTATCTGATTAGAATATTATCACGTCCATATTTAAATTTCCAATTTCCAATTTATGTCATAA TTTGTACACCATGGATTTTAGTGTGTGGACTTCACCGACCTCCCTTTTCCTTGTCTCCCCATCCCACGAAAGTAAATGGA GTAGTTTTGCAGTTTGTGTATAGTTGGGGTCTAAGGAAGGATTTGTTTTGTGGATGGTTACTAATAGTGACTTTAAGTAG TCAAATATGCAAATGTTTGAAGAGAATCTATTAATTGTCTTGCATAAAATGAAAACCTTTTTGGTGGCTCAACAAATGAA TTTTGAATTTGATATTGAGGACAATTATGAATGAGTACTTGTTTTTATTGGTTATTTATCCAGACAGGAGACTTAAATAA TGGGGATGCTTTTGGAAATAGAAGATTGGAGAATGGAAGCATGAGTACTGAATATGATAATCAGCCATTATCCACAAACT TTGCTCCCAACGCGAGTGCTGGGACAACAACTGTGATGGAAGAAAAAACAGCTCTCACTATTAATAGTAAGGAGGCTTTA CCAAACATGCATGGATGGTTTCTTAGCCGTTGCAAAGATTTCAGCATGTCATCATCTTGAAGATGTTCTGGATGATCTGG TAGTGTCTCTGTGTAAGTTCACTACTCTTTTGAACCCTTCATCAGCTGAAGAACCGGTCCTTGCTTTTGGAGATGACATA AAAGCAAGAATGGCAACTGTAACAGTTTTCACTATTGCAAATAGGTATGGTGATTTCATTCGCACAGGTTGGAGAAGTAT TCTTTATTGCATCCTTAGATTGCACAAGCTAGGTCTTCTTCCTGCCCGTGTGGCCAGTGATACAGGTGAAGAGTCAGAGC TTTCTTCTGAAACTGGGCATGGAAAACCTATTGCAAATTCTATATCCTCAGCTCATATGCCACCTATTGGTACTCCAAGG AGATCCTCAGGATTGATGGGAAGATTTAGTCAACTCTTATCTCTTGAATCTGAAGAGCCAAGATTACAACCCACTGAACA ACAACTTGCTGCTCACCAACGCACCCTACAAACAATACAGAAGTGTCACATTGACAGCATATTCACTGAGAGTAAATTTC TTCAAGCTGAATCTCTATTGCAGCTTGCAAGAGCACTCATTTGGGCTGCAGGTCGAGCTCAGAAAGGGAACGACACCCCT GAGGATGAAGATACAGCAGTTTTCTGCCTGGAATTGCTGATTGCAATAACTTTGAATAACAGGGATAGAATTGCACTTCT TTGGCAGGGTGTGTATGAGCATATTTCCAATATTGTTCAGTCAACTGCCATGCCTTGTGGCTTGTGCTCTTGTAGATAAG GCTGTTTTCGGACTCCTGAGGATTTGCCAGCGGTTGCTTCCCTACAAAGAGAACATTGCTGATGAACTTCTTAGGTCATT GCAACTTGTCTTGAAGCTTGATGCCCGGGTTGCAACTTGTATTCTCAGATCACTGGTAGGGTGGCGTTCAATTACATCAC TACTTGCCATCACAGCTAGACACCTAGAAGCCTATGAGACTGGGTTTGATGCACTATTGTTCATAATGTCCAATGCAGCC CATCTGATGCCAGCTAATTATGTTCTTTGTGTAGATGCTGCTAGGCAGTTTGCTGAATCTCGTGTTGGACAGGCAGAGCG ATCTGTACAGGCACTAGATCTCATGGCAGGCTCTGTCAATTGCTTGTCACAGTGGAGTAACGAAGCTAAGGAAGCAATGG ATCAAGAGCAAGTATTTAAGTTGTCCCAGGATATCGGGGAGATGTGGTTGAGGCTTGTGCAGGGGCTAAGGAAAGTGTGC TTAGACCAGAGAGAGGAGGTTAGAAATCATCCATTATTATCTTTGCAGAGGTGCTTGACAGGAGCTGATGGGATTGATCT CCCACATGGACTGTGGTTACAGTGTTTTGATCTGGTCATCTTTACTGTGCTTGATGACCTGCTTGAAATTTCACAGGGTC ACTCTCAAAAGGATTACCGCAACATGGAAGGCACGCTTATCTTAGCCATGAAGCTCTTATCTAAAGTTTTTCTCCAAATA CTCCAAGATTTGTCACAATTGGCAACCTTCTGCAAATTATGGTTAGGTGTCCTAAGCCGAATGGAAAAGTATATGAAGGT GAAAGTTAGGGGAAAAAGAAGTGAGAAACTTCAAGAGTTAGTGCCTGAGGTGCTTAAGAACATCTTGCTTGTTATGAAGA CAAAGGTTATACTGGTGCAGAGAAGTGCCTTAGGTGGTGATAGTTTGTGGGAACTGACATGGCTACATGTGAATAACATC GCTCCATCTTTGCAGGCGGAGGTCTTCCCTGAACAGCATTCTGAGCATTTGCAGCACAAGCAGAGTGAATCATCAGTGGG AAGTTTGATGCCTGATGAAACGGGCTACATCCCTTCAAATGAAACAGAAAGCCATGATGATACTGGCATTGTTGTTTAAC TATAGCTAAAGTATTATGGCTTCCTGAAACCAGTTTTGCTGTTTATGACGTATGAATCCGTGATCAACCTTGGTAGTTCT CATTCAAGGCCGGGTTCTCATTCTGACATTGCAGAGTATCGTGGTTCACATTCACACCCTAATTTTGTTTGGAGCAGTGT TATCAAATAGCGGCGCTACGCCGCTATAGTGTAGCAGAATTTTGGCTAATCGCAACGCCGCTATTGCCCACTATAGCGCG CTATTCCGCTATTTGCCACTAAATAGAGGCCGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGCCAGCGATTTGACA ACACTGGTTTGGAGCTCATAGACGCAAAGGACTACGGGACAAGGGTAACCAGGTAGTTTTCTCAGTTTGAAGATGCAGCG AAGTTGGGTGAGTTGAATCTCATGTTAACCTTTCAATTAGTAATTTTTTGATAAAAATATGTTGTGGCTGGAGTTAGACT TCTGCTGCACTTCTACTAGAGGGTGCTTAGGGCTTCCCCTTCCTAACCATGGGACTACCTCAGGGACAGGTTAACTAAAA ATTTCCTCAAATAGATTTTTGTACAGAACCTCAAATCATGTGTTACCGTTAGATGCATTTCACTGGGTAATGATGCAAAC AGGAAGGTTCTCATTTTGCAGGTCATAAATGTATAGAAAAAAGCATCAAATATCTTGTAAAATCCAATAGTATCATACCT AAAGCATATATTGTATATGTAGGTGAGTTAATAGAATTTTTGCCTAAAGGTAAAAGTAGCATTAGTATCTGAAACTTGGG CCAATTGCTTGAATGATGTCAAATTTATTTGTAGGATGAGGGGCCAAATTTGATTGATAGTTGTTATAAAGTGGTCATTC TATAACCTCTAAATTCATTATAGGATTCTATTAAGTAATTACGGATGGTCACAAAACACTAATCATCAACAGTGACTGCT GATGATTTTAGCCTCTCCATCTTAAAAATAAAAAGTTAACATATATGTAATTTTGAACTATCGTTCACAAGTTGCATGGG AGTGAAGACAATTTCCGTATATAATATAATAGCACGAGTCAATGACTTTGACATCTTA
CDS sequence (LotjaGi1g1v0087500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATATTTCCAATATTGTTCAGTCAACTGCCATGCCTTGTGGCTTGTGCTCTTGTAGATAAGGCTGTTTTCGGACT CCTGAGGATTTGCCAGCGGTTGCTTCCCTACAAAGAGAACATTGCTGATGAACTTCTTAGGTCATTGCAACTTGTCTTGA AGCTTGATGCCCGGGTTGCAACTTGTATTCTCAGATCACTGGTAGGGTGGCGTTCAATTACATCACTACTTGCCATCACA GCTAGACACCTAGAAGCCTATGAGACTGGGTTTGATGCACTATTGTTCATAATGTCCAATGCAGCCCATCTGATGCCAGC TAATTATGTTCTTTGTGTAGATGCTGCTAGGCAGTTTGCTGAATCTCGTGTTGGACAGGCAGAGCGATCTGTACAGGCAC TAGATCTCATGGCAGGCTCTGTCAATTGCTTGTCACAGTGGAGTAACGAAGCTAAGGAAGCAATGGATCAAGAGCAAGTA TTTAAGTTGTCCCAGGATATCGGGGAGATGTGGTTGAGGCTTGTGCAGGGGCTAAGGAAAGTGTGCTTAGACCAGAGAGA GGAGGTTAGAAATCATCCATTATTATCTTTGCAGAGGTGCTTGACAGGAGCTGATGGGATTGATCTCCCACATGGACTGT GGTTACAGTGTTTTGATCTGGTCATCTTTACTGTGCTTGATGACCTGCTTGAAATTTCACAGGGTCACTCTCAAAAGGAT TACCGCAACATGGAAGGCACGCTTATCTTAGCCATGAAGCTCTTATCTAAAGTTTTTCTCCAAATACTCCAAGATTTGTC ACAATTGGCAACCTTCTGCAAATTATGGTTAGGTGTCCTAAGCCGAATGGAAAAGTATATGAAGGTGAAAGTTAGGGGAA AAAGAAGTGAGAAACTTCAAGAGTTAGTGCCTGAGGTGCTTAAGAACATCTTGCTTGTTATGAAGACAAAGGTTATACTG GTGCAGAGAAGTGCCTTAGGTGGTGATAGTTTGTGGGAACTGACATGGCTACATGTGAATAACATCGCTCCATCTTTGCA GGCGGAGGTCTTCCCTGAACAGCATTCTGAGCATTTGCAGCACAAGCAGAGTGAATCATCAGTGGGAAGTTTGATGCCTG ATGAAACGGGCTACATCCCTTCAAATGAAACAGAAAGCCATGATGATACTGGCATTGTTGTTTAA
Protein sequence (LotjaGi1g1v0087500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIFPILFSQLPCLVACALVDKAVFGLLRICQRLLPYKENIADELLRSLQLVLKLDARVATCILRSLVGWRSITSLLAIT ARHLEAYETGFDALLFIMSNAAHLMPANYVLCVDAARQFAESRVGQAERSVQALDLMAGSVNCLSQWSNEAKEAMDQEQV FKLSQDIGEMWLRLVQGLRKVCLDQREEVRNHPLLSLQRCLTGADGIDLPHGLWLQCFDLVIFTVLDDLLEISQGHSQKD YRNMEGTLILAMKLLSKVFLQILQDLSQLATFCKLWLGVLSRMEKYMKVKVRGKRSEKLQELVPEVLKNILLVMKTKVIL VQRSALGGDSLWELTWLHVNNIAPSLQAEVFPEQHSEHLQHKQSESSVGSLMPDETGYIPSNETESHDDTGIVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 14 | 368 | 355 | 1.1E-179 | – | |
| PANTHER | 14 | 368 | 355 | 1.1E-179 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 394 | 372 | - | – | |
| MobiDBLite | 357 | 394 | 38 | - | – | |
| MobiDBLite | 363 | 388 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0087500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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