Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0091400
Transcript ID	LotjaGi1g1v0091400.2
Related isoforms 2	LotjaGi1g1v0091400.1 LotjaGi1g1v0091400.3
Lotus japonicus genome version	Gifu v1.2
Description	Pyridoxal kinase; TAIR: AT5G37850.2 pfkB-like carbohydrate kinase family protein; Swiss-Prot: sp\|Q8W1X2\|PDXK_ARATH Pyridoxal kinase; TrEMBL-Plants: tr\|I3SC66\|I3SC66_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0091400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:13256801..13262723) extracted from Lotus japonicus Gifu genome v1.2.

ACAACATTGTAAGTGGTCGTTGTTTGTTCCTCTTCCATTTTCTCATCACACTACATTTTCCCGAGAAAATCACATTTTCC CGGTAAAACACCTCTCTCTTTCTTTCTCTCTTTTCCAAATCCTCCATTATCTAAATCTCTTTCGCTCTCCACGTGTTTGT TCAAAGTCGATGCATCATGCACAGGAGCCTCACCTATATACGCGCATTCGATTTCGCAGTTTCATCTCATAACAATAATC TTAACTTCCGTTTTCTTATCTCAGATTCAAACCCGAGAAGAAACTCCAGGAATTCATCCATGGCGCCTCCGATTCTCTCC CTTGCTCTTCCCTCCGAGACCGGTCGCGTTCTCAGCATTCAATCTCACACCGTTCAGGTTTTCTTTCCCCTTTTCAATGT GTAAAACTATTTACAATTTTGATTGATTCTACTTAGCTTCAGCTATTGCATGTTCTGTATTGGCATGATCATGAGTGTCT TCTGGTTTAGGAATTACATTGACATTGTGGCTGAGTTTGCTGTTGTTGTTGTCAGGGTTATGTTGGGAATAAATCAGCTG TGTTCCCACTGCAACTTTTGGGCTATGATGTGGATCCAATCAATTCTGTGCAGTTTTCGAATCACACAGGCAAGCTGTTT CTATTGCTTCCATTTCTTGATTCCTCCTCTGAATAATAGTGGGGTTTATGATTGATGGATTTTTGGGGACTATGCAGGGT ACCCAACTTTTAAGGGTCAGGTTTTGGATGGAAAGCAACTATGGGAACTTGTAGAAGGACTTGAAGCTAATGATCTCTTG TACTACACTCACTTATTAACAGGTGTGTGTAATTTAATTGTTACTCCATCAGGGACTGAAATTGTTTTTTTCTTTTTCGC GGGGGGAGTAGACTTTTATGCATTGCAGTGCTGTTGTCTAAATTGACAGTTTTCCACATTTTAATTTTGTTTCTAGTTTT AATTTTAGTTACTCTAATTATTTGGATCTGTCTCATGTACTTTCAGGTTACATTGGTTCAGTTTCTTTTCTCAGCACTGT ATTGGAGGTTGTCAGCAAGCTTCGCTCGATAAACCCTGAGCTTATATATGGTAAGACCTGAGAGCACTGGAAATGCTTAA GTTCATGGGTTGGTTTAATTTGGTTCAATTCTATTTGAGATGCAGATTTGATATTAATTATAGCTTATTAATGCAAATAC CAAAGTTTGAACATTTTAGGAACAAAATTGAACCAAGAGAAAGCTTAGAACTTCCCAAAGCAAACCACTAATTTTGGTTT GATGCAGTTTCAGCTCTCATTTTTTGTTGCTATTTTTATTGTCAGGGTTAGCGGTTGTCCTGGGGAATGACATGTCTTTA TAGAAAATTTTCCCTTTATTTTGTATTTCTAGAGAGGAGTTGCCTAAACATGTGTCTGCAATTTGTTTCCTTTTCAGTAT GTGATCCAGTGTTGGGTGATGAAGGGAAGCTTTATGTTCCGGAGGAGCTGGTGTCAGTGTACCGTGAGAGGGTAAGACTG ATAATATACACAACATGACCAGTTCAAATATATATAAACTTCTCTAACAAAACTATGCATCCCAAGCTTATGTCTCGTAT AACTGAAAATTATATTTTAATACATTATTATTGAGTACCTATTTATGAGATGGTAGAAGCATCATGCTTTTAATGCCTAT AATTCTTAACTTGTTTTGACATCTCAGTAACACACATTTTGGTAGGTTGTTCCTATGGCTTCAATGTTGACTCCCAACCA GTTTGAAGCAGAACTATTATCAGGACACAGGTAATTATAATAGAATTAAGATTACTCAAATTTACTCTGTCAGGAAATCA CTGATATGTAAAACTATGTGCGCGTGTGAGTACGTAAGGAAAACTACCTTTTGGAAATGCATAGCATCCCCTGTATGCCT CAGACATTTCATATCTTCGATCTCTTTTGATTTTGCAGTATAGCTTGTATCATCTTGCTTTTGTTTTTTCTGGTACATAA ATCAATTCCTTGACTAAGTTTGTGAGTAAACATTGCATTTCTTGAGATGGATAGGAATGAAGAAGTAGAGACACAAATTA TTTGAAGTACATTTACTCTGTTTATTTCATGGTTTTTTTGTGTGGAGGGGGGATGGGCTTATCAATATTAATGGTCCCCT TCTCATGTGCATTGACATCTTTGTTTATGTGTTCTGCATGCTATGTGTTAGTTTGGGGTTTGGATACTGTCCACAATCCA CATTGATGGAAAGGGTCTTGTTCGTTTTTTAGTAGGATGTTGCATGTGCATTGTGCACTGATGTCCGTGCCTCTGTGGGC ACTTGTTGGTGATGCATTTGCCATTAATTAGGTTTAGAGCTAAAGTCACACCCACCGGTCACATTTTTTTCATATGTCTA GAAGGCATCGAGTGATTGAAATATTATTTTCAACATATGAAATACAACAGATTGGGTTTAGAACACATTTTGTGGTCTTC AATTGTTTTAATTTTTTCCTCTCTCCGCTGGGAGCCTGGGAGCTGGAACTATCAATTTTTGTCTATTTATTCTGTTTGTT GATTTTCTAGAACATATCTGGTTTATGTTTTAACTTTGAATATATATATGTCACAGGATTCAGTCTGAAGGAGATGGTCG AGAAGCTTGTAACTCGCTTCATGCAGTTGGACCTTCAAAGGTTTGCTTCCAATCTTCTATGTTTGAAATTTTTCCCAGTT AGGTGGGTGGGGATTGAAATCGCTGAGTTCCAAACTGCTTTTTTGTCCCTCTTTGGACAGTCTTCTTGTTTTGATCCTGA CTTTCCCTTCTGATCTATGTCTTGACATGTACTAGGACCAATTAGTCACAAATGTCTCATGCATTTTCTTGTGCTCAGGG ATTTTGAACAGATAATGAAGATTCACTAGATCTATCTTCTTTCAGTTGCAGCTTAATGATTTGGATGAATTCCTGTTTTA TTCCATAGGAAGCATGCTGATATTTAGTGTACACTGTACATTAATAGAAAAAAAAATCAAACTGCTGTTTTATTCTTTAC TACTGAAATATCAGTACAACAGTTATACACATTTCAATCATATGGCTCTGTTGAAAGGTGGAATCCTATCACTTCAGCCT GTCTTCCACCATATGCATCCTTTCACTGATGGTAAAACATAATCTGAAATCAATGCTGAGCTTTAAGGATTACAGGCTTC AATCTTTTTCAAACCCAAACATTCTATTCTGATTTTAGCTATGCTTCAATATTTTTCTTGCATTTTTTCCTAGTTCACCT ATTTCTTTACATAATAAAGTTCTGATGGTTTCCTGGCTCCATGAAAATTTTGGATTTTAAATTCGTACAAGATATAAGTG GGAGATAGCAATGACTGAAATTTGTACACTCTGCTGTAAAGACGCCTGCAGGCCCACACACACAAAAAAAGTTGTCTAAA CCTAATGTTGCAACTAACTGAACTTTTCTTATAATGATTGTTCTGTTTCTCACAATCATTAAGCTAATGTATCATGTATG TGCATCCTCAGGTTGTAATTACAAGTATAAGTATAGATGGGAATCTTCTCCTCATTGGAAGCCATCAAAAGGAAAAGGTG GGATAAATGTCACGTATAATGTTATTATCAATGGTAATATTTTATTTCTAACTTCAGAGTTCAGATATATGAATAATAGT ATAGATCAATATTATTGACTTTTTGTAATTAGCTTATGGTATGTGTCTGCTTGCCCCTTTAATAGTTCTGAGAACCAAAC TGAGTAGACTAGTCAATTTGATTTAAAAAACTGGTGAACTGGCTAATTGTCCAATTTGTTAACATATGGTACCTGGAGAA GCTGCGAACCAATGTAAACTAGGACTGAAGCTGGTTTAGAGCCAAACTAGCAATCAGTTGGGTTTAAACAGTTGATGTGG TGCAAATTATGGTAATGTTGCACAATGTGGATAAGCCACATGATCACCAGATTACACAAGTAAAAGCTAGTGCAGGTGGG GTTGGACCAAAGTCCATTCACTTAGGGGATTTGGCTAGTGTCACACCAATGTGTTAATTTGTTTTTATTAATATATGCTT TATGGGTAAAATGTTTATTTTTCTGTCACTCAATGATTATAATAAAACTGCAAAATTTCATTGATGGTATTCAGTATTTA AAGTTTTAAACACTTTCATTTTACAGAAAATAGAAATTTCTTTTTTTTTTTCTAGACATGCATATCCACTAGTTTTGATT TTTCAAAACATGTTTATCAAAACACACTAACCATGGGAACACTGAAGTATAAAGCGTGGAATTTCTATTTAGTCATACTC TGAAGTCTGACCTCTTCATAAGAACCTCTTAAATTTGTATTGCCTTTTGTGTGCAGGGACATCCTCCCAAACAATTTAAA ATCGCGATTCCCAAATTACCAGCTTATTTTACGGTATGAATATTCTATATATAGTTCTGTTGATTTATTTAGTGTTTGTC GTGCAATCCATAAAACATTGTGTTAACTACTTAAGTTTCTTTGGAGTCAAACATGAATGAAATTCAGCTGAAACCAAGTG GCTGTTATTTGTAAGCTATATGGATTATGATAAATTATCACTCATATATTGTCTATCTATTTCCCTAAATAGGTGAGAGC TATGTGTATTGCTACTCATTAGTGTGTACATCCGGAATAAATGCCCTTTTTCTGAGTTTCCATTACAAAAAATTGAAAGA CAAAAATTTCTTGACATCAAATTTCCATCGAAACTAAAAAATACTGCATATTGTTCCCGTTTACATTGTTCTCCTTGGGA AAAAATGATGAGGAATGCAGTTCACTTACATGAGTTGCATCATTTAACCGCTTTGCAAACTAGCTTCCAACAAATTCCAC CTTACATACTTCTGTCAAACACAGTTATGTAGTGCCCAAGTAGACAGGACATACTGCTTTAACTGCTAATTGTCTAATGA ACCTGGTGCTTGTTAGGCAGTATGAAGTATTGGACGTGTTATCCAATTCCAGACAATGAAAAGAAAGAATAAAAAACTCA ATCCAAGAAACTTTCAAACCAGCCAAATTGACTTAAAAATTTATTCTATAAAGTTATCTATTCCTATTCTGCTAAAAACT GCCTTCATGCAGTCGATAACAGTTGCTTTAATTATGTTTAATGTTCTTATGTTTGTAGGGAACGGGAGATCTCATGACTG CACTTCTTCTTGGTTGGAGCAACGTAATGAATGCCATTGCTTAATGGTTATGGCTTTGATTATAGTCTTCCTTGTAATTA CATCATATGAACCTAAAATATGCCTTTACTCATCGCAGAAATACCCGGACAACCTTGAGAAGGCTGCAGAACTTGCTGTA TCAAGCTTGCAGGTACTTTTTTTTAAATACATACTATCAATCTTGTTCTTTTTAGATTAAACAAATTATTCCTAGTCCTG AGATTTTAAAATTTGGATAATTTCGGTGAATAGACCGGGTTACCATATCATTACCAAAAAAAAAATTTCCCAATGATAGA TGATCAATGGTGTAACGATGACAATGTATGCAGGCACTTTTGCAAAGGACACTTAATGACTACAAAAGCGCTGGACATGA TCCACAGTCAACCAGTTTAGAGATCAGATTAATTCAAAGCCAGGATGATATTCGCACTCCACAAGTCAAATTCAAAGCTG AAATATACAGCTAAGTTGATGATATGATATGAAATATACAGATAAATTGTATTTAAACTTTTTTGTGAGAATGGTGTTAG AACTTAGAACTCAAGACATAAACGGTGAGGAGGAAAGTTGCTTCTTTCTTCGTCTATTTCTTTGTTCAAATATAGAAAAT TGAGTTATGATGTTGAGTAATTACACTGCAAGCCCAGCCCTTTAAAACCAAGTCACTTTAAACCGATATGGCAGATAACA AAT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0091400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCACAGGAGCCTCACCTATATACGCGCATTCGATTTCGCAGTTTCATCTCATAACAATAATCTTAACTTCCGTTTTCT TATCTCAGATTCAAACCCGAGAAGAAACTCCAGGAATTCATCCATGGCGCCTCCGATTCTCTCCCTTGCTCTTCCCTCCG AGACCGGTCGCGTTCTCAGCATTCAATCTCACACCGTTCAGGGTTATGTTGGGAATAAATCAGCTGTGTTCCCACTGCAA CTTTTGGGCTATGATGTGGATCCAATCAATTCTGTGCAGTTTTCGAATCACACAGGGTACCCAACTTTTAAGGGTCAGGT TTTGGATGGAAAGCAACTATGGGAACTTGTAGAAGGACTTGAAGCTAATGATCTCTTGTACTACACTCACTTATTAACAG GTTACATTGGTTCAGTTTCTTTTCTCAGCACTGTATTGGAGGTTGTCAGCAAGCTTCGCTCGATAAACCCTGAGCTTATA TATGTATGTGATCCAGTGTTGGGTGATGAAGGGAAGCTTTATGTTCCGGAGGAGCTGGTGTCAGTGTACCGTGAGAGGGT TGTTCCTATGGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTATTATCAGGACACAGGATTCAGTCTGAAGGAG ATGGTCGAGAAGCTTGTAACTCGCTTCATGCAGTTGGACCTTCAAAGGTTGTAATTACAAGTATAAGTATAGATGGGAAT CTTCTCCTCATTGGAAGCCATCAAAAGGAAAAGGGACATCCTCCCAAACAATTTAAAATCGCGATTCCCAAATTACCAGC TTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAACAAATACCCGGACAACCTTGAGAAGG CTGCAGAACTTGCTGTATCAAGCTTGCAGGCACTTTTGCAAAGGACACTTAATGACTACAAAAGCGCTGGACATGATCCA CAGTCAACCAGTTTAGAGATCAGATTAATTCAAAGCCAGGATGATATTCGCACTCCACAAGTCAAATTCAAAGCTGAAAT ATACAGCTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0091400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHRSLTYIRAFDFAVSSHNNNLNFRFLISDSNPRRNSRNSSMAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQ LLGYDVDPINSVQFSNHTGYPTFKGQVLDGKQLWELVEGLEANDLLYYTHLLTGYIGSVSFLSTVLEVVSKLRSINPELI YVCDPVLGDEGKLYVPEELVSVYRERVVPMASMLTPNQFEAELLSGHRIQSEGDGREACNSLHAVGPSKVVITSISIDGN LLLIGSHQKEKGHPPKQFKIAIPKLPAYFTGTGDLMTALLLGWSNKYPDNLEKAAELAVSSLQALLQRTLNDYKSAGHDP QSTSLEIRLIQSQDDIRTPQVKFKAEIYS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10534 View details on PTHR10534 Search for proteins/transripts with this domain View external data on PTHR10534	49	346	298	2.3E-138	IPR004625 Show description in modal box View details on IPR004625 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.1190.20 View details on G3DSA:3.40.1190.20 Search for proteins/transripts with this domain View external data on G3DSA:3.40.1190.20	53	348	296	9.5E-111	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53613 View details on SSF53613 Search for proteins/transripts with this domain View external data on SSF53613	56	346	291	6.39E-67	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd01173 View details on cd01173 Search for proteins/transripts with this domain View external data on cd01173	57	310	254	8.01082E-113	IPR004625 Show description in modal box View details on IPR004625 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00687 View details on TIGR00687 Search for proteins/transripts with this domain View external data on TIGR00687	57	346	290	7.4E-79	IPR004625 Show description in modal box View details on IPR004625 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08543 View details on PF08543 Search for proteins/transripts with this domain View external data on PF08543	134	239	106	3.3E-13	IPR013749 Show description in modal box View details on IPR013749 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008478 View details of GO:0008478 AmiGO InterPro QuickGO	Molecular function	Pyridoxal kinase activity	Catalysis of the reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate.	Subterm of View details of GO:0016301 View details of GO:0016773
GO:0009443 View details of GO:0009443 AmiGO InterPro QuickGO	Biological process	Pyridoxal 5'-phosphate salvage	Any process that generates pyridoxal 5'-phosphate, the active form of vitamin B6, from derivatives of it without de novo synthesis.	Subterm of View details of GO:0042823 View details of GO:0043094

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0091400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi1g1v0091400.2