Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0042823

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Pyridoxal phosphate biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Subterm of

Relationships

The relationship of GO:0042823 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0042823, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
URLhttp://www.mercksource.com/

Associated Lotus transcripts 13

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0021599.1
– PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1|
GO terms
3
Lj0g3v0021599.2
– PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1|
GO terms
3
Lj3g3v2284470.1
– PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1|
GO terms
2
Lj3g3v2286550.1
– PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1|
GO terms
2
Lj6g3v1967070.1
– Pyridoxine biosynthesis protein [Lotus japonicus] gi|72256517|gb|AAZ67141.1|
GO terms
2
LotjaGi3g1v0210000.1
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0210000.2
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0210000.3
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0210000.4
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0364100.1
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT3G16050.1 pyridoxine biosynthesis 1.2; Swiss-Prot: sp|Q9ZNR6|PDX12_ARATH Pyridoxal 5'-phosphate synthase-like subunit PDX1.2; TrEMBL-Plants: tr|V4SSW9|V4SSW9_9ROSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0364100
GO terms
2
LotjaGi6g1v0317700.1
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q39963|PDX1_HEVBR Probable pyridoxal 5'-phosphate synthase subunit PDX1; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
GO terms
2
LotjaGi6g1v0317700.2
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
GO terms
2
LotjaGi6g1v0317700.3
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0042823
Biological process Pyridoxal phosphate biosynthetic process 1 7.69