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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0111500 |
| Transcript ID | LotjaGi1g1v0111500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT2G30260.1 U2 small nuclear ribonucleoprotein B; Swiss-Prot: sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B''; TrEMBL-Plants: tr|A0A1J7HLK6|A0A1J7HLK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0111500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17395315..17398012) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTTTGTTTCAGTGAAGTCCCTTCTGCTAGTAACGCAGTGCGACAAATGCAAAACTTCCCGTTTTATGAAAAACCTAT GGTAATCATGTTATAGTGCTGTTAGTAATTTATTTACGGTTATCTTATAAATATGTTTTCTTTTATTCCTATTTTATGTA ACCTTTTCCGTTTGCCTGCTCAAGTTTTCTTGCTGTATTTGATCACGAGTCTTGTAGTTTGTCCTAATTATCTATTGACA ATCTTGGATTCATGTTTGTGCCTACAAGACCTGGGTCTGATAACTTCTGTTTAAATATTTTGTTTTAATTTATTTGATCC AAACACCTATTGTCCTGTAGGCACTATGTTCATTATCATGATTCACCAATGAGACTGAGAGATGTGGATTATTGATAATT TGATTTTTCTATCTTTTCATCAATGAGATGATTCTAAAAGCTTTTGTGTAATTAATTTGATGATGCAGCGAATTCAGTAT GCTAAAACAAAGTCAGATTGTATTGCTAAAGAAGAAGGAAGCTATGTTCCAAGGGAAAAGAAAAAGAAGCAAGAGGAAAA AGGTGAACAATATTGATCTATTAATACATTTCAAACCATATTCTTACTCATTTATTGAATTTTATTTTAGAGTTCTTGCA TGTTGTTTGTAGTACTATGTACCATTATCATCATCAGTCCCTTTAAAGTGGTCGGTTTTAAATGGCTGAGCCATCATATA TAATAGGATTGTGGCACTTCAATACTGATCATTAGAACCAGGCAGCAGTATCCACATTGCAGTTGTAAAGAATAATAATT GAGTTTATTTAATACTCCCTCTGTCCCTGATTATAAGCCCCTCTTCAGACAATTAGCATATTAAGAAAACATGTAATGAG GCTAATTCATGTATTGGTTTAAAAAACAGTGTACAATCTTCTACATTTACCCTTAACCTTAATTAATGTATTGAGTGCGT GGAAAAGAATTAATTACTAGTGGTAACCAAAACTATGGAATTACAAAAGTATAATAAATACAAGGGGGGATATATTGAAA ATGATAATAGTTTTTTATGAAATTTAGTAGGGCTCCTATATTCAGGGACACCAAATATGTCTCTAAAAGGTCTTATAATT AGGGATGGAGGGAGAATGTCATTACACAGCACTCTTTTTCTGTATGGAAATTTTAAAATATGGTAAAAGGTGATAGAAGA ATGTTCAGGAAAGTTGAAAATGTTCTTTAAAACTAGTGCATTACGGTTTTAATGCAATGGTCCTTTGGTGGTATTATTCT TGAGTGCAGTTGATATAGATTTTTGGGGAAGCAATGCTTCCCTGGCCTGGGAATTTGACCAAACCTATTATCCTCTAATT TCCTTAGCCTAGATATAGTATAATTGAAATTTACTGTTGTAAGGACATTGTTTATTGTGAAGTAAACCTTCTAGTAATGG ATTATGTCATGTTTTTTAATTTCCCCTTGCTCCCCTGCTAACCATCCCATGAACGTGCTAGTTTTTCAGAGTAAATAAGT TACTATTGTTATTGCCCATGTTAAGCATTTGTAAATGAACAATATCAAAATTTCAACATGTGGACATTATTTTTGCTAAG CTGTAGAGACTAGAGAGTTTAAGGATGTTTCCATTATCACTCTGTGATTTCTTGAACAAGAATCAATATTAGTTCCTTTG TTAAATTGGCAATAATTTCTTATTGTTTGAATTTAAATTTGATTAACATGACTTCACCTGTTCAGCTGAAAGAAAGAGAC GTGAAGAAACACAGCAACCTGCTCCGGCTAATGGAACACATGGTGCAAGTAATGGTGGCCCAACTGTAAGTTCCTCTAAT CTTTGTTGCTTATAGCCTGATTTTCTCGTATTAAAATTTTGGCTGTGGATTCTAAGGAATTTATTGATGCTAATATAGCA ATTTCTTCCCTCCTCTCTTAACAAAATTGGACCATCTGTTCAATTTTTGCATCTCAGTCTCTTGGGCATGAAAGAAACAA GCAAAAGGATGATGGCTGTTAGAAGTATAATAATTAAACCATTATTCTGTCTTCACACAATAGCTTAAGCTTTTGAGGTT GTTGGTTTCTAACATTGTGTCAGAGCCTCTAAGATGAAGTGGTCTAGAATTCGATCCTAGCTTACCTGATTCTTCTAATT TAAAGTTGAATATCAGCATAATGTAGGTAGGCTTGTGCAATACCACGCGTCAAAGCCCAAAGGGCTCTTGCCCATAGTGT TGTGTTACAAATATAAAATAAAATTATTCATTTATCTTCACCCAGTAGGTGAAGTCCTAGGGATGTAATTGGTTCATGAA ATGTTTTGTTTAATTTCACTTTAGCAGTTCTGTGGATATGGTTTATCTAGTAGTATGATATTACTTGCATAAGCATATGA CATGTACTATTATTATCTGCAGGCCTCCTTCCGTCCAGGAGTCGGTGCCCAAGAAGCAGCTGCTCCTAACAATATTTTGT TCATTGAGAATTTGCCTTATGAAACTACCGGTAGGATGCTTGAAATGCTATTCGAGCAGTACCCAGGTTTTAAGGAAGTG CGCTTGATTGAAGCAAAGCCGGGTATTGCATTCGTAGATTTTGAAGATGAGGTGCAATCTTCCATGGCCATGCAGGCCCT TCAGGGCTTCAAAATCACCCCTCAGAATCCTATGATTATAACCTTTGCTAAGAAGTAG
CDS sequence (LotjaGi1g1v0111500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAACTTCCCGTTTTATGAAAAACCTATGCGAATTCAGTATGCTAAAACAAAGTCAGATTGTATTGCTAAAGAAGA AGGAAGCTATGTTCCAAGGGAAAAGAAAAAGAAGCAAGAGGAAAAAGCTGAAAGAAAGAGACGTGAAGAAACACAGCAAC CTGCTCCGGCTAATGGAACACATGGTGCAAGTAATGGTGGCCCAACTGCCTCCTTCCGTCCAGGAGTCGGTGCCCAAGAA GCAGCTGCTCCTAACAATATTTTGTTCATTGAGAATTTGCCTTATGAAACTACCGGTAGGATGCTTGAAATGCTATTCGA GCAGTACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCGGGTATTGCATTCGTAGATTTTGAAGATGAGGTGC AATCTTCCATGGCCATGCAGGCCCTTCAGGGCTTCAAAATCACCCCTCAGAATCCTATGATTATAACCTTTGCTAAGAAG TAG
Protein sequence (LotjaGi1g1v0111500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRREETQQPAPANGTHGASNGGPTASFRPGVGAQE AAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 1.7E-60 | – | |
| PANTHER | 1 | 160 | 160 | 1.7E-60 | – | |
| MobiDBLite | 24 | 52 | 29 | - | – | |
| MobiDBLite | 24 | 77 | 54 | - | – | |
| Coils | 33 | 53 | 21 | - | – | |
| MobiDBLite | 53 | 67 | 15 | - | – | |
| Gene3D | 78 | 160 | 83 | 1.8E-22 | ||
| SUPERFAMILY | 81 | 159 | 79 | 1.29E-17 | ||
| CDD | 84 | 156 | 73 | 1.30574E-37 | – | |
| ProSiteProfiles | 86 | 160 | 75 | 13.532 | ||
| SMART | 87 | 156 | 70 | 6.0E-12 | ||
| Pfam | 88 | 147 | 60 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0111500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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