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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0142400 |
| Transcript ID | LotjaGi1g1v0142400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14-3-3 protein; TAIR: AT1G78300.1 general regulatory factor 2; Swiss-Prot: sp|P42653|1433A_VICFA 14-3-3-like protein A; TrEMBL-Plants: tr|I3S5Q3|I3S5Q3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0142400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23619128..23621035) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCCGCTCCCTCCCCTCGCGAAGAGTTCGTCTACCTCGCCAAACTCGCCGAACAAGCCGAGCGCTACGAGGAGAT GGTTGAGTTCATGGAGAAGCTCTCCGCCGCCGTCGACGGCGAGGAACTCACCGTCGAGGAGCGTAACCTCCTCTCTGTTG CCTACAAAAACGTCATCGGCGCTCGCCGTGCTTCCTGGCGTATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGT AACGAGGATCACGTCTCCATCATCCGTGACTACCGATCCAAGATCGAGTCTGAGCTTTCCAACATCTGCGACGGGATCCT CAAGCTTCTTGACTCCCGTCTCATCCCTGCTGCTGCTTCCGGTGACTCTAAGGTGTTTTACCTCAAGATGAAGGGCGATT ACCATAGGTATCTGGCTGAGTTCAAGACCGGTACTGAGAGGAAAGACGCTGCTGAGAGCACTCTTGCTGCTTACAAATCT GCTCAGGTTTGTAGATCTGTTCATTTTGCTTGTTAGATTCGCGATTTTCACATGTTTCGATCTATATTTGTGTTTGTGTG TACATGCACTCTTGATGGAAGCTATAGGATAACTGCGTTTTTTTGATTGATTGAATTTGATACTGGTTTGAAATTGACGA AAACGTCAGGTTTGCGATTATATGTTAGATTAGATTGGAATAATCGAATCTTATAAGGTAATAGTGATTTTTGAATTGAA GAAACTTGAAAATTGCGGATTGCTGGCTTGGAATTGAATGAATTGCTAGGTTTAGGTTAGATTATTTTCTGAATTAGATT CAAATGAATGAATCTTTACAGTAACAGTGAGTTTTTGTATTCAAGGAGCTTGAAAATCTTGGATTACTGGTTTAATATTG AATGAATTAGATTGGAATGATAGAATTTGGAATATATAAGCGATTTTGGAATTGAAGGAAGTTGGAAATTGCAGATTACT GGTTCAAAAATTGAAAAACTCAAGTAAGGGGATCCCTGTATGGGTGTGCATGTTTCGCTTACTTAAGTGTTTGGTGTTTG TGGTTCTGCTATGATGATTTTTCGTGTTTCTGTTTTTGTGCTGAGGGATTGATCTGTGGCTATGTGGAATTGAAAATTTT CTTGTTTCTGTTTGCGGTGGGCTGATTTTCTGATGCTTTGGTTTGATTCTTGCTGCAGGATATTGCAAACTCTGAGCTGC CTCCTACTCACCCGATCAGGCTGGGCCTTGCTCTGAACTTCTCTGTGTTTTACTATGAGATTCTGAACTCTCCTGACCGA GCTTGCAGCCTTGCAAAACAGGTTAGTGTTAAAGAAACTGAAACAGTTAATTGATGTGTTATTTCTTTCAATAATTTACC TTTTTGATTAAATTGATTGGTGGTTGCTGTGAGAAACACATGATTATGGCTGAATGCAGTGAAATATTCCAATTTTGCTG TCTGTGAATTGGAGTAAGGTTCATTTCATTGCAAAAACTCCATACTGTAATTTCATTAATGCTGAAATAACCTTGTTAGG TTCTGAATTCTGATAATGAGGAGTATTACGTTTGTTCCTTGATGACTTCGGTTTGGGTCCCTTCTGTTCTATAATGGTTT GTACTCATGAACACTTTGGTTCCTTTCAATATTCACTAGGCTTTTGATGAGGCCATTGCTGAATTGGATACATTGGGAGA GGAGTCATACAAGGATAGCACTTTGATCATGCAACTTCTCCGTGATAACCTCACCCTTTGGACCTCTGACATGCAGGTAT GGATTTTGTGTTAGTACACCATTACTTCTGTATCTTGTCTTGTTTTCTCATCATTATCTTTATTTATTGATTTCATTTTT TTTTTGGGTTTCAGGATGAAGGTGCAGATGAAATTAAAGAAGCCGCACCTAAACCTGATGAACAGTAG
CDS sequence (LotjaGi1g1v0142400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCGCTCCCTCCCCTCGCGAAGAGTTCGTCTACCTCGCCAAACTCGCCGAACAAGCCGAGCGCTACGAGGAGAT GGTTGAGTTCATGGAGAAGCTCTCCGCCGCCGTCGACGGCGAGGAACTCACCGTCGAGGAGCGTAACCTCCTCTCTGTTG CCTACAAAAACGTCATCGGCGCTCGCCGTGCTTCCTGGCGTATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGT AACGAGGATCACGTCTCCATCATCCGTGACTACCGATCCAAGATCGAGTCTGAGCTTTCCAACATCTGCGACGGGATCCT CAAGCTTCTTGACTCCCGTCTCATCCCTGCTGCTGCTTCCGGTGACTCTAAGGTGTTTTACCTCAAGATGAAGGGCGATT ACCATAGGTATCTGGCTGAGTTCAAGACCGGTACTGAGAGGAAAGACGCTGCTGAGAGCACTCTTGCTGCTTACAAATCT GCTCAGGATATTGCAAACTCTGAGCTGCCTCCTACTCACCCGATCAGGCTGGGCCTTGCTCTGAACTTCTCTGTGTTTTA CTATGAGATTCTGAACTCTCCTGACCGAGCTTGCAGCCTTGCAAAACAGGTTAGTGTTAAAGAAACTGAAACAGTTAATT GA
Protein sequence (LotjaGi1g1v0142400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAPSPREEFVYLAKLAEQAERYEEMVEFMEKLSAAVDGEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG NEDHVSIIRDYRSKIESELSNICDGILKLLDSRLIPAAASGDSKVFYLKMKGDYHRYLAEFKTGTERKDAAESTLAAYKS AQDIANSELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQVSVKETETVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 212 | 211 | 7.6E-107 | ||
| PIRSF | 2 | 212 | 211 | 2.7E-94 | ||
| PANTHER | 5 | 204 | 200 | 1.0E-127 | – | |
| PANTHER | 5 | 204 | 200 | 1.0E-127 | ||
| SUPERFAMILY | 7 | 204 | 198 | 7.72E-88 | ||
| SMART | 8 | 208 | 201 | 2.1E-141 | ||
| Pfam | 14 | 205 | 192 | 2.1E-83 | ||
| Coils | 14 | 34 | 21 | - | – | |
| PRINTS | 42 | 71 | 30 | 9.6E-69 | ||
| ProSitePatterns | 48 | 58 | 11 | - | ||
| PRINTS | 91 | 115 | 25 | 9.6E-69 | ||
| PRINTS | 122 | 144 | 23 | 9.6E-69 | ||
| PRINTS | 157 | 183 | 27 | 9.6E-69 | ||
| PRINTS | 184 | 210 | 27 | 9.6E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0142400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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