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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0143700 |
Transcript ID | LotjaGi1g1v0143700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein yippee-like; TAIR: AT3G11230.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230; TrEMBL-Plants: tr|A0A151T905|A0A151T905_CAJCA Protein yippee-like; Found in the gene: LotjaGi1g1v0143700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23861696..23864953) extracted from Lotus japonicus Gifu genome v1.2.
GCAACCGTTTGATTTCACGTTGTAATTGTATTTTAACAAACAAACAAACCCCAAATTTCATAGACCCACCACCCCTTGCA TTGCAATTGCATGAGTAACACCCACCCTTTTCAACTCTCTCTCTCACTCTCGGTAACCATTTCCTTCCATCAATCTCGTT TTCTCATTCACGTTGATTCGCCTTATTCTTATTCTACATTGCAATTTGCATGCTTCCAATTTCAATTTGGTACTGATCTT TCTATCTGGTTTCTCTTTGTTTTCAATTTCTTGTTGGGTGGTGATTTTCTGATAGGAATTTTTCTGAAGTTGACAGGTTA CTGTGTGAAGGGAAAAACATGGGAAGGCTATTCTTGATCAACCTTGAAGGAAGCTTCTACAGCTGCAAGCACTGCCTCAC TCATTTTGCTCTTGCTGATGATATCATTTCCAAGGTTCTCCACCTGCTCCCTTTTTTATTTCTTGGTGCCTCAATGTACA ACTTTCTTTAACTGTGATTCTGGATTTTCTTCTTTCTGGGTAATTGTTTGATTTATAAGTTTGTTTTTTATGCCCCTGTT GGTCAATGGTCATGAATCATGGTGAGAGTGATGATGTAATTGAAGATAGGATCAAAGGAAAATATTAAGATATATTAATA TATCACCTGTTGGGTTTAAGAGTAGCTGCATTTGTGTGAAATAGATTGGAATCCCCTGCTGTTTCAGAATAAGTGCAGGG TTTGCAGTTCTCAATCTACCTTTAAGAATTGATTAACTTCAATTTTAAAATGTTTATTATTTTATGATATAAACCAAAGG TTAAAATTCATGGAGTTGTGACTTAGGACTGTACATGTTCCTAGTCTGTGTGACACATTTTCAACACTAACACTCACAGT GGCATAGGAGAAAGGGTCAGGTATTGATTTTTCAACTGTGGAAGGATCTGCTGTTTGGACTGATTATGTGTGTCTTGGAC AGCTATAAAGTATCATTAATTTTTTTTTGGTGTGGTGGGTATTAGTTTGTAATTGTAACAATGTCAGGATAGGGTTATTT TTTCTCGGAGCAAATGATCATGTTTCTAAGTGAGAAATGTTCTTGTATAGATGGTTCTCCTAATTCATTGAGGTTGGTCC ATCATGACTTGGTAAAAAAGTGAGCTAACCCAACTTGACTTACTTTTTGATGTCACCAAATAGCCAGCTTTGCTTAAACC ACCCATGGTAGGCATGTTCAACAGGTTGGCTTACTCATATTAACAAATATTAATAATCTTATAAATGCCAAAAAAAAAGA AGAAAGTGTCATTAAAAAGATAAACATGTAGAAGAAATATAGCTAATAAGAAATTTAGTACCTAAAAAAATTGGGATTGA CTCTACAAAACTTAGGTGGAATCTACTTAACCCATGTCTCAAGTGAAGAAACTCACTTGTAACTTGGAAAAATGAGTCAA TTTTTAAAAACTCAACCCACCTTTGAACTAGGTGGAGCTGGGTTGCTCATAAACCTGAACCTAGATTGACACCTCGGTTG ATACCAGTCATGTCAAGATATGTATGAAATGAACAAACTTGAGGATGATCTGCTAGAAATACTTATATCATATTGACTAT ATATCTCAATAGAATTCTTAAGTGTTGTGATCTTTTGGTATAATTTCCTAATTTGACTTTTCTTTCATATTTGAATGGCC AGCTAAATTGTAAAAATCCTTTTCTAATTCAACATGCGTGATATCAGATACTTATCTAAACTATGGCTTCTATGTCGGTC GACGGTCAATGTATTCAAATTTCATGAATCATGAATTTATTGGACAGAATCTTTTGATTTATCTGCATATGAAATGGTAA AGGATGTCCTCTCATGAAACCATTGAGCATTAAAATTAAAGCATTCTCTGCCCTGATTATGGCACCTACTTTCTCAAAGT TTATCCTTATGTAATTTGTTGTTAAATGAGTTGAGAAATTATCAGAAAGATCAGAATTGCTGCTGGTTCACCTTACCTTT GTTGCCTATATGCATCTGAATCATTATTTGTACAATGCCTTTTGCAAACTACATGCATCAGTAAAAATTGGAACCTGCTG ATAATCTAACCCTGCTTTTTCTCTTAGTCTTTCCTTTGCAGGCATGGGAAGGCTTATCTTTTTGATAAAGTGTACGTGTC ATTTCACTTTCTTTGTACCAATTACCTTGACCCTTAATAGTGCCAATGTAGAATCTTTGAAACTGCTATGTATGTAGAAT CTTTGATATTGCTGTGTCAAAATTTAGCTTTAAACATCGGAAGAGAAAAAGAAATTGTGCCAAAATATAACCATCTCAGT ATGTTACTAGTTATGTATGATGAGACCCAGTTGTGTTTCCCGTGCTTTACTGCAATGAAGTTTCTTTTTCTATACAAAGT AAAAGATTAACTTTGTACTGAAGTTTCAACATCTGTGAAAGAAACTAATGCTTTTATGCTTGCTGTATCTTGGATACACT AATAGTGCAATTGATATAGGATGGAATCTCGATATTCATATAAGACTTGGTTTCGTAATAGTGCTTCAAATAACATATCT GTTAATCCTTGTTATGACAGTGTGAATGTCACCGCTGGCGAGAGAGAAGCACGGTTGATGCTCACAGGAATGCACATTGT TGTTGACATATTCTGTGCTGCATGTGGGTCCCTTGTTGGATGGAAATATGTAAGGACCACTATTTAAAAATGATGGTTTG TGATTTTTACCAATCTAGATGCTGCTGGCATTTGGAACATCTTTGTTTCTAATATATTTTATTTTTATTTCATTTTAGGA GGCTGCTCAGGAGATGACTCAGAAGTACAAAGAAGGAAAGTTTATTCTTGAAAGGTGACCATCTATATATGATGAGGAAT GCTTTGTAGGCTTGTAGCTTTTGAGTATTTAACTTGGGTAGCAGTGGGGATAGGAGGAGGAAGCATTCACCAATCCATAT TTTGCTGACATGTGCTTTATTATTGAGTAGGTTTAAGGTGTTGGGACCTGATGGCAGCTTCTACTTGGCAGCTCAGGAAG CTCTTGCGGGTGATGAAACTGATGCTGATGATGCTTGATTTTCTTATTTCAGGACCATATAATTTTGAATTGTACATTCT TTATGCTTCATGTTAAAATCTGCTATCTCAGTTATTAGATTTGGTATATTTGCAATAGCCCTCTATTAACATTCACAAGT TACAACAGTTACATATTTCAATTCAGATTCAAACATTTGTTTTTGCTTGTGTCTTTTC
CDS sequence (LotjaGi1g1v0143700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCAATTTCAATTTGGTTACTGTGTGAAGGGAAAAACATGGGAAGGCTATTCTTGATCAACCTTGAAGGAAGCTT CTACAGCTGCAAGCACTGCCTCACTCATTTTGCTCTTGCTGATGATATCATTTCCAAGTCTTTCCTTTGCAGGCATGGGA AGGCTTATCTTTTTGATAAAGTTGTGAATGTCACCGCTGGCGAGAGAGAAGCACGGTTGATGCTCACAGGAATGCACATT GTTGTTGACATATTCTGTGCTGCATGTGGGTCCCTTGTTGGATGGAAATATGAGGCTGCTCAGGAGATGACTCAGAAGTA CAAAGAAGGAAAGTTTATTCTTGAAAGGTTTAAGGTGTTGGGACCTGATGGCAGCTTCTACTTGGCAGCTCAGGAAGCTC TTGCGGGTGATGAAACTGATGCTGATGATGCTTGA
Protein sequence (LotjaGi1g1v0143700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPISIWLLCEGKNMGRLFLINLEGSFYSCKHCLTHFALADDIISKSFLCRHGKAYLFDKVVNVTAGEREARLMLTGMHI VVDIFCAACGSLVGWKYEAAQEMTQKYKEGKFILERFKVLGPDGSFYLAAQEALAGDETDADDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 15 | 143 | 129 | 3.8E-62 | – | |
PANTHER | 15 | 143 | 129 | 3.8E-62 | ||
ProSiteProfiles | 26 | 123 | 98 | 46.653 | ||
Pfam | 28 | 117 | 90 | 2.0E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0143700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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