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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0184700 |
Transcript ID | LotjaGi1g1v0184700.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Response regulator; TAIR: AT3G48100.1 response regulator 5; Swiss-Prot: sp|Q9SB04|ARR5_ARATH Two-component response regulator ARR5; TrEMBL-Plants: tr|I3SAC7|I3SAC7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0184700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36169679..36172825) extracted from Lotus japonicus Gifu genome v1.2.
CCTATAATGGTTTGACCCGTCTTGAAATTGTGAGAGCAACGTACAACAACCCACAATAGTCACTACTGTTCACAATCTCA ATAAAAATATAAGATTTTGACAGCAGAAGCGACAAGTGCAGGTGGGATAATCCCTTTTGCTGGATTTTGCCGAAAAAACA AACAAGATCTCTCAGATTTCGATTCGAATCCCAAATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTTCTCTCACCTTTC ATTCCATATATATTATTCCCCTTCCTTTTCACCTTCCCATTCAACTCCATCATCTTCACTTTTCCCATTTATACCCATTT TTCTTCTCATCCACAAACTTCATCATCATTTTCATTTTCATCTTAATTTCGAGATACCCTTTTGATGGATACCGCCGGCG ATGTTCTCAGGCAGAGTTTACCCGCAATGGATGCAGGGGAGCTGCATGTGCTTGCTGTTGATGACAGCCATGTCGACCGC AAGGTCATTGAACGGTTGCTCAGAATCTCTTCTTGCAAAGGTAAACATGGGAAATCAAATTCCATGATTTTTGTGTTTTT TTGTTGCATTTAGATTGGTTTCTGATGGTTTTTGGAACTGGGTTTTTGCAGTTACAGTTGTAGATAGTGGAACCAGAGCT TTGCAGTATCTGGGGTTGGATGGGGAGAAGAGCTCAATTGGTCTTGATGTAAGAAAACTTGGCTCTAGAATTGTTTAGAT GCATTTAACTTTACTGTTTAATGGTGTTTGTTACTTGCTTGAATTGGAGCTTATGTTGTTGTTTTGTTTGATTGTGGTTG CAGAGTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCTGGGATGACAGGGTACGAACTGTTGAAAAAAATAAA GGTGAGATTGAGAATGGTGATTTTGTTTTCTTATCTTGATCATGGAAGAGAAGAAGAAATTAATTGAAATATTAATTGTT AGTTGTTTATTTTGTCTTCTAATTTTTTGTATTCCTTCATGTTAATTTCAGCAGGAGTCATCTGTTTTCAGAGAGATTCC AGTGGTGGTTATGTCTTCTGAGAATATCTTGACCCGAATTGATAGGTAAGCTCTTGATTCAAATTAAAAAGCTACTTTGT TCTGGTATAGTTTTTAATTTTCTAGAAAGCATGTTGTTGTTTAGCTGAACTTTTGAATTCAATTTCTTGATTTGTGTGGT TGTATTTACATTTTGGATGAGGTTTGTTGATTTGCATATGCTCCTAATAACTTTGAATGGATTTGGATCATTTGAGGTGT GTTTGTATTTCTGTTAGTGCAGATCCAATTTGAATGTGCTTTTGACCAATTTGGCAATCCATATCTTTTGTTAATTGAAT AAATGTATTTTTGACCAACTTTTACATAGCAATAATTGCTTCTTGTAATGATGTACATACTAAAATCTACCATATCAGAG AGTATCCCTTGTGGGGATTAGAATACTCAATAATAAAGGAAATAATTGTATGGAAGATCACAGGAGATCTTAATAGTAGA TATTTATGCCTAGGCTTGCGTTGTCGTGTGGATTAGTGCTCATAATGCTTTAAGCCTTCACAATTACCAATAATATGAAA TACTCCCTCCATTCCTATATAACTGATACTTTAAGGTTGTGGCACAAATATTAAGAAGTAGCAATTAATATTCTTGTTTT ACTAAAATTACTATCTAACTTCCTATTATACCCTTTATCTCTCTTATCAATTCTAACTTTTCAATTTTCCTACAAACAAT AAATGAAGGGCATAATTGATAAAGTAGCATTAATGCTCTCTTGAAATTGTAAAAGTATCAGTTAAATAGGAACAAAAAAA AGAACCAAATTAGTATCAGTTATTTAGGAACGGAGGGAGTATGTCTTAGTGCTAATTTTAAACTTAAAATATTTTTAAAT TGAAGCTGATGCCTTAGGATTCGGGTCCCAATAACACATGGCCACTATCCTGTTCCTAAAAATGGAGGTCTTACTTCAAC AAAAAGTGCATCACGATGTGTTATTTTCTTTCGATTTTATTTTCTTAATTGGTAGGATTAATCTCTCAATAATCTGATAA TGTTAGACACATGTAGTGTTGTGGAACATATTACTTTGCTTGCATTTGTGGCAACAATGATTGAAGCTTGATGAAATCAG ATTCCTCTTTGTTTACTAGTCAATTAATTGAACAAGGACCTTGTTGGCATGACAGCAGTTATTGTTATTGTCATTGTTAT AATTGCCACATAATTCTCTATTTTATTAACATCATCTAGGAAGCTTGCATTTGTTCCTGAATTATTGGCAAATACTGCCA TGTTGAACATCATCTAGGACCTTGTTGGCATGACAGCAGTTATTGTTATTGTCATTGTTATAATTGCCACATAATTCTCT ATTTTATTAACATCATCTAGGAAGCTTGCATTTGTTCCTGAATTATTGGCAAATACTGCCATGTTGAACCCACTTTCTCA TTGCTTAGTTTTTATGATTGTCAGTTGCTTGGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCTGTAAAGTTGTCAGATG TTAAACGCCTAACAGATTTCATCATGAGAGGTGGAGAGAAGAAGGTTGAACAAAGATGTCAAAAAAGAAGCAGATCAGAT GATTGCAGCTCATCTTTATCAACTGCATTCTCATTGGTTTCTCATCCATGCGATCTATCATCATCACCTGTTCTATCAAC ACTTTCACCATCTGCAATGTCATCAAAGAAATCTAGACTATGATGAGTAGTGATCTTTATGTCTCCATTTTTGCAAATTG TTGATATCCCAAAGCCTCTGATGTAATTTCCGATTCTGAAATATAGATTGCTGACAATGAGTACTAGGATTAGGAACGAG GAAGGGGATGTCAGAATCACTTTTTTGTTTTGGCTTAATTCTAACATTGTACAAAAGATATTTATTGAAAATTAATGAAA ACCCTCTATTTTGAAGGGTTTTACTTCAAAATTATGTTTACTTTTGGTCTATATAGAGTGTAGTTCCTCTTGGTATTATT TTTAATAAGCATTTTATTGGTATATGTACCTCCATGGTGCGATTAAACTTGGTTCTCAAGCTTTATGTACCCCCATATTG CTGTCTGAGCTTACCCTACCACATGCA
CDS sequence (LotjaGi1g1v0184700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACCGCCGGCGATGTTCTCAGGCAGAGTTTACCCGCAATGGATGCAGGGGAGCTGCATGTGCTTGCTGTTGATGA CAGCCATGTCGACCGCAAGGTCATTGAACGGTTGCTCAGAATCTCTTCTTGCAAAGTTACAGTTGTAGATAGTGGAACCA GAGCTTTGCAGTATCTGGGGTTGGATGGGGAGAAGAGCTCAATTGGTCTTGATAGTGTGAAGGTTAATCTGATAATGACA GATTATTCCATGCCTGGGATGACAGGGTACGAACTGTTGAAAAAAATAAAGGAGTCATCTGTTTTCAGAGAGATTCCAGT GGTGGTTATGTCTTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCAGAGGATTTTCTATTGAAGC CTGTAAAGTTGTCAGATGTTAAACGCCTAACAGATTTCATCATGAGAGGTGGAGAGAAGAAGGTTGAACAAAGATGTCAA AAAAGAAGCAGATCAGATGATTGCAGCTCATCTTTATCAACTGCATTCTCATTGGTTTCTCATCCATGCGATCTATCATC ATCACCTGTTCTATCAACACTTTCACCATCTGCAATGTCATCAAAGAAATCTAGACTATGA
Protein sequence (LotjaGi1g1v0184700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTAGDVLRQSLPAMDAGELHVLAVDDSHVDRKVIERLLRISSCKVTVVDSGTRALQYLGLDGEKSSIGLDSVKVNLIMT DYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEDFLLKPVKLSDVKRLTDFIMRGGEKKVEQRCQ KRSRSDDCSSSLSTAFSLVSHPCDLSSSPVLSTLSPSAMSSKKSRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 15 | 206 | 192 | 7.0E-94 | – | |
PANTHER | 15 | 206 | 192 | 7.0E-94 | – | |
SUPERFAMILY | 19 | 151 | 133 | 1.17E-27 | ||
SMART | 20 | 144 | 125 | 2.1E-20 | ||
Gene3D | 21 | 173 | 153 | 7.0E-31 | – | |
ProSiteProfiles | 21 | 148 | 128 | 32.543 | ||
Pfam | 22 | 141 | 120 | 3.3E-21 | ||
CDD | 23 | 141 | 119 | 1.20228E-22 | ||
MobiDBLite | 185 | 206 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. |
Expression pattern of LotjaGi1g1v0184700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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