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LotjaGi1g1v0215100.4

Overview

Field Value
Gene ID LotjaGi1g1v0215100
Transcript ID LotjaGi1g1v0215100.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Hypersensitive-induced response protein 1; TAIR: AT5G62740.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1; TrEMBL-Plants: tr|I3SUN5|I3SUN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0215100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:47452425..47454370) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGAATCTTTTCTGCTGTGTGCAAGTGGACCAATCCACAGTGGCTATCAAAGAAAGATTTGGACGATTTGAAGAAGT TCTTCAGCCAGGGTGCCACTGCTTGCCATGGATCCTTGGAAGTCAACTTGCCGGTCATCTCTCTATTCGTGTGCAGCAAC TAGATGTTAAATGCGAGACCAAGACAAAGGTAATCTGCAATTTCATTCAGGGTTTTAAATTGCTGTTGCGTGTTTGTCGC TGAATTGCGAATAAATACGGGTTGATGCGGCTACAATTGTGGTTGCGATGCTGTTTAATGCCATGTGTTTGTATGTAATG TGTTTTTCCCAAGTAGTTAGCCTTACAAGCATGGTTTTAAACTATCAGGATTTTGGAAGTCTCCGCCCGCTACCACAATT GTGGCTGCGTCCGTGTTAGTCCTTAATTTTCTGCAATATCTAGGATTGCGACATGACAAAGCAACTGCAGCTGTTACACC AATTTAAAAACTTTCTTAGGTATTACATTTTTCCATTGAATCACAGCTGATTATAGTTTTGATGTTTATTTTGTTTCAGG ATAATGTCTTTGTCAATGTTGTTGCTTCAGTGCAATATCGTGCCCTGTCTGAGAAGGCCAGTGATGCTTTCTACAAACTT AGCAATACAAAGACCCAAATCCAAGCCTATGTTTTTGATGGTATATACCAGAACACTGCTTAATTAAAAATTTAAATTCT CAGTTAAGGTAAACTGTTGTTCTAATGGCATGCAGTAATTAGAGCAAGTGTTCCAAAACTCCTCTTGGATGATGCTTTTG AACAGAAAAATGATATCGCCAAAGCTGTGGAAGAGGAGCTTGAGAAGGTTCATTTTATGATATTAATATATAAAAATGCG AACCGTACTGGATTAACTTTAATTTGAGCCTGATGCTTAAAAGTCTTAACAGGCCATGTCAGCTTATGGATATGAAATTG TTCAAACACTGATTGTTGATATTGAGCCAGATGAGAACGTGAAGCGGGCTATGAATGAAATCAATGCTGGTAAGTTAAAT GAGTACAACTTTAAGCATTCTAGTATAATCAGTGTTGAGGGTGTGCATGGAGCTTGTTTAGGATTTTTTTATACGCTAAG TTGATGTTTGGTTAAACTGATAAAAATAGTTCATGACTTATTTACGAGCTCTTGTGAGCTTATTTTGACAATCTTCAACT TCTGAATAAGCGTTTGTATATGAATGATAACTGAGTAGTGTTGTCATATGCTCTTAATTAAGTTGTTTAACTAAACACAC CATATGCTCTATGGAGTAGTAACTTCTTGTTGATTCAACTGACCTCAATTTCGGCTTATTTCTGTGTTTTTATTGTTATT TTTTCTTCATGAAAAGTTGTCGTAACTAGGTGCAAGAAATCTCCAATGCTCACGGATTTCATTATTGTATTCTCATGTTT TCTTTCTGTGATCAGCTGCAAGATTGAGGCTGGCAGCTACTGATAAGGCAGAGGCAGAGAAGATCTTGCAAATCAAGCGA GCTGAGGGTGAGGCTGAGTCTAAGTACCTCCATGGTGTCGGTATTGCTCGCCAGCGTCAAGCAATTGTGGATGGTTTGAG AGACAGCGTGCTCGGATTCTCCGGTAATGTACCAGGGACGACTGCAAAAGATGTCTTGGACATGGTCCTTGTCACTCAGT ATTTCGACACTATGAAAGAAATTGGTGCTACCTCCAAGTCTTCTGCTGTTTTCATTCCCCATGGACCCGGTGCTGTTCGT GATGTAGCAAGCCAAATTCGTGATGGACTTCTTCAGGCTTCTCATCACTAGTTTCTACTCCACCAAGCTCTTGTGTCAGG TTTGTCTGTGGACATACATGATAATGCTCTATGTATGTGTGTGGTTGTCTTTCTTTGAAGTATGTTCAGTGGTTTTGTTA TATTTGATAATCAGACTGTCATGTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0215100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAATCTTTTCTGCTGTGTGCAAGTGGACCAATCCACAGTGGCTATCAAAGAAAGATTTGGACGATTTGAAGAAGT TCTTCAGCCAGGGTGCCACTGCTTGCCATGGATCCTTGGAAGTCAACTTGCCGGTCATCTCTCTATTCGTGTGCAGCAAC TAGATGTTAAATGCGAGACCAAGACAAAGGATAATGTCTTTGTCAATGTTGTTGCTTCAGTGCAATATCGTGCCCTGTCT GAGAAGGCCAGTGATGCTTTCTACAAACTTAGCAATACAAAGACCCAAATCCAAGCCTATGTTTTTGATGTAATTAGAGC AAGTGTTCCAAAACTCCTCTTGGATGATGCTTTTGAACAGAAAAATGATATCGCCAAAGCTGTGGAAGAGGAGCTTGAGA AGGCCATGTCAGCTTATGGATATGAAATTGTTCAAACACTGATTGTTGATATTGAGCCAGATGAGAACGTGAAGCGGGCT ATGAATGAAATCAATGCTGCTGCAAGATTGAGGCTGGCAGCTACTGATAAGGCAGAGGCAGAGAAGATCTTGCAAATCAA GCGAGCTGAGGGTGAGGCTGAGTCTAAGTACCTCCATGGTGTCGGTATTGCTCGCCAGCGTCAAGCAATTGTGGATGGTT TGAGAGACAGCGTGCTCGGATTCTCCGGTAATGTACCAGGGACGACTGCAAAAGATGTCTTGGACATGGTCCTTGTCACT CAGTATTTCGACACTATGAAAGAAATTGGTGCTACCTCCAAGTCTTCTGCTGTTTTCATTCCCCATGGACCCGGTGCTGT TCGTGATGTAGCAAGCCAAATTCGTGATGGACTTCTTCAGGCTTCTCATCACTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0215100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGNLFCCVQVDQSTVAIKERFGRFEEVLQPGCHCLPWILGSQLAGHLSIRVQQLDVKCETKTKDNVFVNVVASVQYRALS EKASDAFYKLSNTKTQIQAYVFDVIRASVPKLLLDDAFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDENVKRA MNEINAAARLRLAATDKAEAEKILQIKRAEGEAESKYLHGVGIARQRQAIVDGLRDSVLGFSGNVPGTTAKDVLDMVLVT QYFDTMKEIGATSKSSAVFIPHGPGAVRDVASQIRDGLLQASHH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43327
1 283 283 2.7E-181 –
PANTHER
PTHR43327:SF20
1 283 283 2.7E-181 –
SMART
SM00244
5 165 161 1.2E-35
IPR001107
Pfam
PF01145
9 182 174 1.9E-27
IPR001107
CDD
cd03407
10 278 269 1.20608E-157 –
Gene3D
G3DSA:3.30.479.30
43 167 125 3.7E-15 –
SUPERFAMILY
SSF117892
46 171 126 1.57E-24
IPR036013
Coils
Coil
118 138 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0215100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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