Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0231800 |
Transcript ID | LotjaGi1g1v0231800.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7LI36|K7LI36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0231800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54442209..54447871) extracted from Lotus japonicus Gifu genome v1.2.
TTGTGTTCTGATTATACTTGTAATTGTTCAGAACCCATTGACAAAAAAAAAAAAAAAAAACCCCAAATTCAGAATAGAAA TCCTAATTTCACCCAATCTCCTTCCCATAGCTGCTGCCCCATCCACCTCCGACCACCCTCGCGGCCACCGGCGACCACTC CGGTCTCCGGCCACCGCGTCTCTGCTCCATCCAAGCTCTTAGGTCATTTTTCTCTGCAATTTTTTCGTTTTTCCACTCTG TTTCTGCGTCCTCTCACCTCTAACCAAATTCTTCTCCTCATTTGTTACAACTTACAAGTTACAACCTTCTGTTCCTTCTC CTTTCTCCTCTGTCACTGTTTTCTTAAATCTCTGTTTTCTTTCCCCTTTTTAGTGCAAGTGGCATTGGCACTCAACTTGA CTACACTACATTGGGATTGGATGATTAGTTATTTAGATTAAATTTTACTCTTTAGTTAGACTTTATTTTTCATGTCAATT AAAACATCAAGTCTTGAATTTGTCATCATGTTTTGGTAATTGGTATGTAATACTCTCAATGAGAGTATGAGACTTAATAT CTATCTAGTATCTAATAATATCCATTGAACCTTTGTTATAATATTTGCTATTGTTTCTATGATGTTGAGCCTATATTTGA TGATATAAGTTGTTATTAGTTAGCAGAATTTTTTATTTGTTGTATTGTACAATTGCATTATGCAGGTTTTTAATGTGTGT ATGTATAATTGTGTATATATATATAAATATATATATATAATAGATATATATATTTATAATTTTTTTATTAAGGCTGCCGT GGCACCGCCGTGGCATCCGCCATAATTATATGGCGGTATTTTGGCTTTCCTCCATGGACAGCCATCCGTCATTGATAACA CTGATCTTTACAAGAGCCGGTTTGATGGAAAGAACACCCTAACAATTTTTGCACGATCTGTGTGATTTTATTATATGTTT TTACTCCTTATGGCTCTCCATTTTTGTTTTTGGTCATAAGAAGAGAGGATATTCTTTCTTTCTCTCTCTCATTTATGAAT CATGTAACTCCCTCGCAATCTGGTTTTAGCTCGCATTTCACTATAACTAATTATAATATTGAATCCAAAGAACTCTAAAC CCATGTGCAAATATTCACTACCACTGCACCCCCTTCTCTTTTGTCATTGGCTCATTGCCAATCTTCACTAGCCGTGTGGT GTTCTAATCACAGTACTTGGCACATCAGTTTTCGAATTGCACTCGATCTTCCACAATCCTCACTATTATCATTCAAGTTG TGAGTTAAGAATAATCTACTACTTTACAATAGAGTGTTCTTTAATCCACTATTTTTTACCATACATACTTTTGCAAGATA TATATACATTGTTCATTGTGCTATTAATCTAAAGGATGTTTCATTCCATTTGGAATTTGAAATTACGCCTACCATCTCTT TCAGCACTTTCTGTATAGTGGATGTGTGAGTATTATTTAAGGCCTATTATAGTATACTAATTTTGTTGCTACACTTTGTA ATGATCTTCATTTTTTTCAGTGTTGTTTCGAGGTGCAGGAAAATTAACTTTATAGCTTTTGCTTCTGAAATGTGTGCTAG AATTCCAATGTTAGTATGCTTTTTTATCTATTGGTGGATTATATTAAATTGGTTTTTATCAATTTGTGAATATGATTTTT ATCAATTTGTGAATATGATTTTTATCCTATCCTATTGATTTTATTATAAATTGATATCCTATGAGCATGTATCTTCTTTT ATGCACCACATGTGTTCCCCTCAACCTTTTTCCTTCACTTTTCTAATGTCTTATGTTGCAGAGTATAGGATATGCCGATT TAGCAAGACTTGATCCTCAAATCGGTGGTAAAAGAAAATGCAGTGAATACAGTTATCTTAAGATTACGATTCAGATCATT CTTCTTGATCAGGTGAGAACAGTCCATGGAACACTGGTGACCTGGCAGAAAACACAACTTGTCTGTATGCTTTCTATATG CATTCGACTTAGACACTTTACATATTAAGATAGACCACATAGAGCTATTTAAAATACTTTCATATGTTGGATAGAGCTAT TTAAAATACTTTCATATGTTGTCATGGTGCTACCCCTGTATCTACATATAATCACTGATGTCATAAATATACTTTCTTTT TAAACTTCTAGATTGATATTTTAGAGTTTCACATGCTATTAATAAAATTTACATTTTGATTTCACTGATGTGATTAAAGG AAACATAATTTCAAAATTCAGATTTGAAATTTTCTGATTATGCTATCATTGGGTGTTAATATAATAGTTGAATTTTACTC ATACTTCTGACATTTTTTAAATATATAGAAATAAAAAAAGATTTCAGTTGTAAATTAAAATTTGTCAAAAATAAAACAAT GGAAGTAGATGTAAAAAGACTCAATTTGTACTTACTAATTGATGGTAAAGGTTAGGGCAGTATGTATTTTGTCATGACTC TGGTTTTTTAATAGAACATAACTAACTTAACACTTTCAACTTAATAAGTAAAGAATCACTTAGCAACCGCGCATCGAGCG GGTCTTAGTCTAGTGCTCATAGAATTGCGGAGCCAGAACACTGAGTTAAGGTTATGGTGATAGTGACATAGTGTGATCTA TCTGGTTATTGGATGCCAATTGATTTGGAACTAGCTGTGATATCTTTATAATTTGACTAACTTTGTAAACTTGCACTTTG ATTCTCACAGTTTAGGGTTGGCTCAATTGGCAGAATTAAACAAGGTTGAGGAAAACTGTCTTGTGTTTCCTGCAGCAATA AACCATTGTTGTGGCTTGTGGTATGCCCTGTGATTTTGAAATTGGCCAACCTCTTGTCCTCTGGTCATCCTAATCTTTCT GATAAAAAATAAAGTCTGTTTTACGGGTAGAGCCTACCCTCATTGACAATGCTTTCTTTTTTTACTCCTACTTTTATCTA CATATTATGAGAGAGCAATTATTTTTAATCTGCATACTTCTCTCTTTTAATTATTCTGACACGTCTAAATAGGAAGTGAA ATGAGATGTAACATTAAAACTTAGCACTTTGGAGCTTACTTCCATAGTATCTGCAGCATACGGTGTTTGTGTGTGAGATA TTGTGTACTGGATATTATTTATGAAGCTGTATATGGTATATGTTCTGGTTGCCTGATAGGATACTTCAGTTGGTGTGGAT GTGAGGCCGGCCAAGTTTGTTTGGAATTTGTAGCATCTTCCTTAACCATTTCTTTTGTTACTGGTATAGAAAATGCTGTA AAAAATTGTGGATTATGACAGTGCTGGTGACAGATCAGATTGAGCTAGGGTCAGGGTAGATTATTCTATACAAGTATCAT TCACTGTTGTATTTATATATCTAGCCCCCCCTCCCCTCCCCCCGCCAGTGTTCCTCTAGATTATCATAAAAGAAATTAGG GAAAGATCATTTTGCTTCTTAGATACTAATCCATTTCTATTACAGGTAATGAAATGGGGGATGATGATTCTGTTAGTTTG GACAACTTCAGGGCTAATTGGACTCCTTCGCAGGACCAATATTTTCTTGAGCTTATGCTATCCCATGTTCACCGTGGGAA CAAAACCGGGAAAGTATTTTCTAGAAGAGCCTGGGCGGACATGATTGAACAATTTAACACCACATTTGGGTTGAAGTATG ATATAGATGTGTTGAAGAATAGGTTCAAACGATTCAGGAAGCAGTACATTGAGATAAAAACGATTATTAGTCAAAAGGGA TTCCAGTGGGATAATGCTCTAAACATGATCGTAGCTGGTGAAAAAACATGGGATGAGTATATTAAGGTAGACACTGTCAT CAAATATTTCAAAAGCGCTAATGAATCTTTACATTGCTATTTAGCTTGTTTTTCTGCATGCAGGACCACCCCAGTGCCCG AGCTTTCAGAACACGAGTTGTTCCATATTATAATGATATGTGCATAATTTATGGCCATGCAGTTGCTGATGGGAGATACA GCCTTTCATGTTTTGATGTAGATTTTGAATATGAAGGTATAAAGAAACATACACTTTGATCGTTGAATATTATTATATGG TCTGAACAAAATTCCTTTTTCGTTTTCTTCATCAAATTTATTAATTAAGTAGGTAGGAATTTTTCGTTGTGTTTAAACTA TTTTTTTTTTTACTCAGACATTGCTTCAAAAGAGTTGGATGACCAGACTACCCCCAGTAAAGGAGTGGATGATCAGACTC CCCCTACTGTTATTAATCAAAGTAAAATTGACTGGTCTCCAATGATGGATCATTTTTTTGTCGAACTAATGGTGGATCAA GTACGTAAAGGGAACAAGATTGGTCGCTCATTCGATAAGAAGGCTTGGGTAGACATGACAGAGTCTTTTAATGATAGATT TGAATCTCATTATTGTAAGGTTGTCTTGAAAAACCGTTTAAATGTCCTGAGAAGGCATTACTGCTCTATAAATGCCCTCC TCGGAAAAGAAGGTTTTAGTTGGGATAAAAGACAACAGAAGGTTGTGGCTGATGACCAAGTTTGGCAGAAATGCATCAGG GTATGAAGTGTTCATGATCATTTCTATTTTGTTTTTGATAGTTTTTATTTTCAACCACCATATCACCTACTCGTAATTGC AGGTAAATCACAACTTCCGGCTATATAGAATCAAAAGCATGCCTTTTTATTCTGGCATGTGTATTATATGTCGCGATGAA GCTACTGCGGGCTGCAGGTCAAATCTTGAGAAGGAATCTCCTATTGGCGAGAAATCTGTCCCAGACACTGAGCCTCTCCC TTACGCAGATAAAGGAGCATTGCATATAGGTGCTGAAAATAATTGTACCAGAGACACTCACCATCTTGCTAATGCAGATA AAGGAGCATTACATATAGGTGCTGAAAATAATTTTACCAGAGACAATCAGCATCTTGCTAATGCATATAAAGAGGCACTG CATATAGGTGCTGAAACTAATTGTACCAGAGACACTGAGCCTCTTGCTAATGCAGATAGAGAAGCACTGCATATAGGTAG TGAAAAGAACTCTCCCAGAGAAACTCAGCCTCGTGCTAATGCAAATAATGAAGCATTGCATATAGGTGGTGAAAAGAACT CTTCCAGAGAAACTCAGCCTCTTGCTAATGCAGATAATGATCCATTGCTTTCACATGGTGGAAAAAATGCTTCTGGTCAC AAGAAAAGGCATGAACCTAAAATGCCTCCAATATTAAATGAGGCTAAGAAAGCAAGGAAATATGATGAGAGCATGGATGC TGCTCTGAAACGTATGGCAGCGGCAGTTAAATCACAAAGCAAGAAAACTAAGAAAGAGGATAACTTTTCTGTTGATAATG TTATCAGCGTGCTACAGGCTATGCCAGACTTGGATGAGGATCTAATACTAGACGCGTGTGATTTTTTGGAAGATGAGAGA AGAGCAAGGATGTTTCTGGCGTTGGATGCTAATTTGAGAAAGAAATGGTTGCTGAGAAAGCTTCGTTCATAATGATTGGT GAACCTTGGGGTTATTTCATTTGTAGTCAGGTTTTTAAAATTCTGTTAAACTTCAAGCCAAGCAAACCATGATCTTATAT ATATTCAAGCTCTTGACATATTTGGATGTAAATTAGTTATTCTTATTATGTTTGGCAATTGAT
CDS sequence (LotjaGi1g1v0231800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGATGATGATTCTGTTAGTTTGGACAACTTCAGGGCTAATTGGACTCCTTCGCAGGACCAATATTTTCTTGAGCT TATGCTATCCCATGTTCACCGTGGGAACAAAACCGGGAAAGTATTTTCTAGAAGAGCCTGGGCGGACATGATTGAACAAT TTAACACCACATTTGGGTTGAAGTATGATATAGATGTGTTGAAGAATAGGTTCAAACGATTCAGGAAGCAGTACATTGAG ATAAAAACGATTATTAGTCAAAAGGGATTCCAGTGGGATAATGCTCTAAACATGATCGTAGCTGGTGAAAAAACATGGGA TGAGTATATTAAGGACCACCCCAGTGCCCGAGCTTTCAGAACACGAGTTGTTCCATATTATAATGATATGTGCATAATTT ATGGCCATGCAGTTGCTGATGGGAGATACAGCCTTTCATGTTTTGATGTAGATTTTGAATATGAAGACATTGCTTCAAAA GAGTTGGATGACCAGACTACCCCCAGTAAAGGAGTGGATGATCAGACTCCCCCTACTGTTATTAATCAAAGTAAAATTGA CTGGTCTCCAATGATGGATCATTTTTTTGTCGAACTAATGGTGGATCAAGTACGTAAAGGGAACAAGATTGGTCGCTCAT TCGATAAGAAGGCTTGGGTAGACATGACAGAGTCTTTTAATGATAGATTTGAATCTCATTATTGTAAGGTTGTCTTGAAA AACCGTTTAAATGTCCTGAGAAGGCATTACTGCTCTATAAATGCCCTCCTCGGAAAAGAAGGTTTTAGTTGGGATAAAAG ACAACAGAAGGTTGTGGCTGATGACCAAGTTTGGCAGAAATGCATCAGGGTAAATCACAACTTCCGGCTATATAGAATCA AAAGCATGCCTTTTTATTCTGGCATGTGTATTATATGTCGCGATGAAGCTACTGCGGGCTGCAGGTCAAATCTTGAGAAG GAATCTCCTATTGGCGAGAAATCTGTCCCAGACACTGAGCCTCTCCCTTACGCAGATAAAGGAGCATTGCATATAGGTGC TGAAAATAATTGTACCAGAGACACTCACCATCTTGCTAATGCAGATAAAGGAGCATTACATATAGGTGCTGAAAATAATT TTACCAGAGACAATCAGCATCTTGCTAATGCATATAAAGAGGCACTGCATATAGGTGCTGAAACTAATTGTACCAGAGAC ACTGAGCCTCTTGCTAATGCAGATAGAGAAGCACTGCATATAGGTAGTGAAAAGAACTCTCCCAGAGAAACTCAGCCTCG TGCTAATGCAAATAATGAAGCATTGCATATAGGTGGTGAAAAGAACTCTTCCAGAGAAACTCAGCCTCTTGCTAATGCAG ATAATGATCCATTGCTTTCACATGGTGGAAAAAATGCTTCTGGTCACAAGAAAAGGCATGAACCTAAAATGCCTCCAATA TTAAATGAGGCTAAGAAAGCAAGGAAATATGATGAGAGCATGGATGCTGCTCTGAAACGTATGGCAGCGGCAGTTAAATC ACAAAGCAAGAAAACTAAGAAAGAGGATAACTTTTCTGTTGATAATGTTATCAGCGTGCTACAGGCTATGCCAGACTTGG ATGAGGATCTAATACTAGACGCGTGTGATTTTTTGGAAGATGAGAGAAGAGCAAGGATGTTTCTGGCGTTGGATGCTAAT TTGAGAAAGAAATGGTTGCTGAGAAAGCTTCGTTCATAA
Protein sequence (LotjaGi1g1v0231800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDDDSVSLDNFRANWTPSQDQYFLELMLSHVHRGNKTGKVFSRRAWADMIEQFNTTFGLKYDIDVLKNRFKRFRKQYIE IKTIISQKGFQWDNALNMIVAGEKTWDEYIKDHPSARAFRTRVVPYYNDMCIIYGHAVADGRYSLSCFDVDFEYEDIASK ELDDQTTPSKGVDDQTPPTVINQSKIDWSPMMDHFFVELMVDQVRKGNKIGRSFDKKAWVDMTESFNDRFESHYCKVVLK NRLNVLRRHYCSINALLGKEGFSWDKRQQKVVADDQVWQKCIRVNHNFRLYRIKSMPFYSGMCIICRDEATAGCRSNLEK ESPIGEKSVPDTEPLPYADKGALHIGAENNCTRDTHHLANADKGALHIGAENNFTRDNQHLANAYKEALHIGAETNCTRD TEPLANADREALHIGSEKNSPRETQPRANANNEALHIGGEKNSSRETQPLANADNDPLLSHGGKNASGHKKRHEPKMPPI LNEAKKARKYDESMDAALKRMAAAVKSQSKKTKKEDNFSVDNVISVLQAMPDLDEDLILDACDFLEDERRARMFLALDAN LRKKWLLRKLRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 401 | 401 | 1.8E-262 | – | |
PANTHER | 1 | 401 | 401 | 1.8E-262 | – | |
Pfam | 15 | 109 | 95 | 1.7E-26 | ||
Pfam | 188 | 280 | 93 | 1.6E-26 | ||
PANTHER | 394 | 572 | 179 | 1.8E-262 | – | |
PANTHER | 394 | 572 | 179 | 1.8E-262 | – | |
MobiDBLite | 439 | 454 | 16 | - | – | |
MobiDBLite | 439 | 476 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0231800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…