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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF12776
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 107 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.040s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0005969.1
n.a. Uncharacterized protein TCM_040985 [Theobroma cacao] gi|508785722|gb|EOY32978.1| chr0 2247237 2251918 +
2 domain predictions
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Lj0g3v0011749.1
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr0 4506930 4509272 -
2 domain predictions
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Lj0g3v0011759.1
n.a. PIF-like orf1 [Theobroma cacao] gi|508719232|gb|EOY11129.1| chr0 4509267 4510238 -
2 domain predictions
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Lj0g3v0024739.1
n.a. expressed protein [Oryza sativa Japonica Group] gi|108711061|gb|ABF98856.1| chr0 9855208 9856351 -
2 domain predictions
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Lj0g3v0069199.1
n.a. F-box family protein [Medicago truncatula] gi|357518767|ref|XP_003629672.1| chr0 24916337 24917106 +
2 domain predictions
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Lj0g3v0245419.1
n.a. n.a. chr0 127213539 127215966 +
2 domain predictions
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Lj0g3v0251979.1
n.a. NDX1 homeobox protein [Medicago truncatula] gi|357472489|ref|XP_003606529.1| chr0 130647562 130647834 +
2 domain predictions
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Lj0g3v0257369.1
n.a. Uncharacterized protein TCM_041182 [Theobroma cacao] gi|508785973|gb|EOY33229.1| chr0 133586466 133587654 -
2 domain predictions
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Lj0g3v0305669.1
n.a. Uncharacterized protein TCM_040985 [Theobroma cacao] gi|508785722|gb|EOY32978.1| chr0 159362875 159364946 -
2 domain predictions
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Lj0g3v0347269.1
n.a. expressed protein [Oryza sativa Japonica Group] gi|108711061|gb|ABF98856.1| chr0 182205956 182208110 +
2 domain predictions
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Lj0g3v0351759.1
n.a. Uncharacterized protein TCM_044690 [Theobroma cacao] gi|508727658|gb|EOY19555.1| chr0 184956364 184960465 +
2 domain predictions
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Lj1g3v0411500.1
n.a. Uncharacterized protein TCM_041182 [Theobroma cacao] gi|508785973|gb|EOY33229.1| chr1 4820433 4825689 +
2 domain predictions
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Lj1g3v1183350.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357471565|ref|XP_003606067.1| chr1 14516095 14518954 +
2 domain predictions
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Lj1g3v1222320.1
n.a. PREDICTED: DNA ligase 1-like [Fragaria vesca subsp]. vesca] gi|470105114|ref|XP_004288933.1| chr1 14903187 14904266 +
2 domain predictions
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Lj1g3v1811180.1
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr1 21935532 21940059 +
2 domain predictions
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Lj1g3v2162770.1
n.a. Uncharacterized protein TCM_034213 [Theobroma cacao] gi|508723113|gb|EOY15010.1| chr1 26142099 26143780 +
2 domain predictions
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Lj1g3v3580370.1
n.a. PREDICTED: DNA ligase 1-like [Fragaria vesca subsp]. vesca] gi|470105114|ref|XP_004288933.1| chr1 41020392 41021311 -
2 domain predictions
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Lj1g3v3834070.1
n.a. PIF-like transposase [Daucus carota] gi|82570160|gb|ABB83644.1| chr1 43547648 43549605 +
2 domain predictions
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Lj1g3v4317530.1
n.a. F-box family protein [Medicago truncatula] gi|357518767|ref|XP_003629672.1| chr1 50767728 50768698 +
2 domain predictions
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Lj1g3v4528330.1
n.a. PIF-like protein [Medicago truncatula] gi|357441359|ref|XP_003590957.1| chr1 53280458 53281418 +
2 domain predictions
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Lj1g3v4692840.1
n.a. PIF-like protein [Medicago truncatula] gi|357453063|ref|XP_003596808.1| chr1 55698004 55699768 +
2 domain predictions
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Lj1g3v4863150.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508703286|gb|EOX95182.1| chr1 58953069 58956186 -
2 domain predictions
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Lj2g3v0062030.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357471565|ref|XP_003606067.1| chr2 1308910 1316685 +
2 domain predictions
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Lj2g3v0062620.1
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr2 1348731 1349747 +
2 domain predictions
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Lj2g3v0062620.2
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr2 1348731 1349747 +
2 domain predictions
 –
Lj2g3v0062630.1
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr2 1348731 1349901 +
2 domain predictions
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Lj2g3v0949400.1
n.a. F-box family protein [Medicago truncatula] gi|357518767|ref|XP_003629672.1| chr2 15079981 15080951 +
2 domain predictions
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Lj2g3v1058260.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357471589|ref|XP_003606079.1| chr2 16889259 16895329 -
2 domain predictions
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Lj2g3v1671020.1
n.a. PREDICTED: cell cycle checkpoint protein RAD17-like [Vitis vinifera] gi|359476809|ref|XP_002264968.2| chr2 26059684 26062450 +
2 domain predictions
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Lj3g3v1739260.1
n.a. PREDICTED: DNA ligase 1-like [Fragaria vesca subsp]. vesca] gi|470105114|ref|XP_004288933.1| chr3 21967916 21970537 -
2 domain predictions
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Lj3g3v3085690.1
n.a. F-box family protein [Medicago truncatula] gi|357518767|ref|XP_003629672.1| chr3 38667236 38668206 -
2 domain predictions
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Lj3g3v3475720.1
n.a. Uncharacterized protein TCM_006656 [Theobroma cacao] gi|508705823|gb|EOX97719.1| chr3 42378451 42380584 -
2 domain predictions
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Lj3g3v3701230.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357476015|ref|XP_003608293.1| chr3 44936657 44938307 -
2 domain predictions
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Lj3g3v3701230.2
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357476015|ref|XP_003608293.1| chr3 44936657 44939235 -
2 domain predictions
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Lj4g3v0448910.1
n.a. Uncharacterized protein TCM_040985 [Theobroma cacao] gi|508785722|gb|EOY32978.1| chr4 6033503 6035101 +
2 domain predictions
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Lj4g3v0485440.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357471565|ref|XP_003606067.1| chr4 8027678 8028589 +
2 domain predictions
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Lj5g3v0068810.1
n.a. Uncharacterized protein TCM_041182 [Theobroma cacao] gi|508785973|gb|EOY33229.1| chr5 333369 337718 -
2 domain predictions
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Lj5g3v0175600.2
n.a. Uncharacterized protein TCM_034213 [Theobroma cacao] gi|508723113|gb|EOY15010.1| chr5 1586882 1589893 +
2 domain predictions
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Lj5g3v0658240.1
n.a. PIF-like protein [Medicago truncatula] gi|357453063|ref|XP_003596808.1| chr5 9083094 9085358 +
2 domain predictions
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Lj5g3v0843440.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508716634|gb|EOY08531.1| chr5 12231717 12236788 -
2 domain predictions
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Lj5g3v0843450.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508716634|gb|EOY08531.1| chr5 12232800 12235323 -
2 domain predictions
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Lj5g3v1473460.1
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr5 21587756 21591528 +
2 domain predictions
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Lj5g3v1473460.2
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr5 21587756 21593736 +
2 domain predictions
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Lj5g3v1473460.3
n.a. Uncharacterized protein TCM_036890 [Theobroma cacao] gi|508782053|gb|EOY29309.1| chr5 21587756 21593736 +
2 domain predictions
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Lj5g3v1913900.1
n.a. Uncharacterized protein TCM_040985 [Theobroma cacao] gi|508785722|gb|EOY32978.1| chr5 27115190 27124424 -
2 domain predictions
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Lj6g3v0098610.1
n.a. PREDICTED: DNA ligase 1-like [Fragaria vesca subsp]. vesca] gi|470105114|ref|XP_004288933.1| chr6 1253455 1253975 +
2 domain predictions
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Lj6g3v0121810.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357471589|ref|XP_003606079.1| chr6 1454603 1456136 -
2 domain predictions
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Lj6g3v0933530.1
n.a. expressed protein [Oryza sativa Japonica Group] gi|108711061|gb|ABF98856.1| chr6 10358825 10360015 -
2 domain predictions
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LotjaGi1g1v0070100.1
n.a. Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880; TrEMBL-Plants: tr|I3SPT3|I3SPT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0070100 LjG1.1_chr1 9941383 9945355 -
2 domain predictions
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LotjaGi1g1v0113000.1
n.a. Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|A0A0B2PYN4|A0A0B2PYN4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0113000 LjG1.1_chr1 17655785 17657293 -
2 domain predictions
 –