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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0295600 |
| Transcript ID | LotjaGi1g1v0295600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT1G32790.1 CTC-interacting domain 11; Swiss-Prot: sp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 11; TrEMBL-Plants: tr|V7AS09|V7AS09_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0295600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71636853..71644367) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCATGATATGCTTAGGCTTGTGGTGACATGTGTGACTAAATGAGTAAATGGGTAGATATGGAAATTTAATGAAAAAA AATTGTTCTTTTCTCCTTTGATACTTTCATCATCATCATGATCATCATCACAATTCACAACACAACCCAAGACATCAATT TGGGACGTTCTTCTCAGGAAGGTCCAAAAAGTCAGTGCAGCAAAAACAAACGATCCGAAGAATAATACCCTTTTATCATC TTTCTCTCTCTACAATCATCATCAACAACAGTGAGGTAAACCATCTCTTCCTCTTCCTCTTCCATTTCACCAAAGTTCTT TCCTTTGAGTAATTTCTTTTGTGGGTTTTAAACTAAAGTTGTGAAACTCACAATTTTTCAGGATCATTTTGGTCTTACTT TGATGGAGATTTGTTAGATAAAACCAAAGGTATAAACTTTCTTTTTCTTACATGGTTTTCTGGTACTGGGTCGTGTCTTG TTTTGTTTCATGTTTCTTTGTTTGTTCAATCTCTTGTTACAGATTCGCTGAAATTGTGTAAGAGATAAAAAAAGGTGAGA ACTTTTTACCTCTAGACAAGTGATCATGGCGGTTGCTGAGAATGCTGGAGCCAAAATCGGTTCTTCCGGTCAGAATTTGG ACAACAACAACACTGTTGTGTCAGCTGAGGACTCAAGTGAGGTGGAGAAATCGAAGACTAGGACCGATCAGAATCTGAGC AACGGTGGTTTCAACCATGAACATCATCCTGGGAACATAGCAGTTCCTAATGGCAACTACAGCTATAATGCTCAAGTGGG TCAGATGCAAGCAAATGGTGTCCAGAACCAGCAGCTTGTGATGAACAATGATGGGTATGGGGAGAATGGGGATGAGAGTT TCAAGCGTGACATGAGGGATTTGGCTGAGCTGTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCTTCACTG ACTAATAGCCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTATCCTAACAATTTTATTCTGCAAAATGATTTTGG ACAGACTAATAGAAGGGTATATTTTGATTTCTTTTGGTTCATACTATTGTTATCCCAATACTATGATAGTTTTCACATTT TTTAACATGGTTTTAACTTGTTACAGAGGAAGAATGTCTATAATTCTGGGAAGAGAAGAATTTTTCATAAGATAGAAATG GAGAAAAGGGATGAGATGATTCGGAGGACTGTTTACGTGTCTGACATTGATCAACTGGTACAACTTTTAGCTGACTTGTG GTTTCTTTCATTTCGGCTGGTTTTGATGTTTTAAATGTGTATTCATTCCAGTGTTATCAAATAGCGGCTATAGCGGCGTA GCGGATTTTTGGCTAATCGCGACGATGCTATTGCCCACTATAGCGCGCTATTCCCGCTATTTGCCGCTAAATAGCGGCCG AAATAGCGGAGTTTTTAGCTCACCGCGATGGTCCGCGATTTGACAACATTGATTCATTCGAATGATTGTTGTTTTCATGT ATATTCGCTCAAATTGTTGTCGTTTTCTTTTGGCATCTAGGTCACTGAAGAGCAGCTGGCGGCTCTATTTCTTAACTGTG GCCAGGTAGAAACTGTTACAAAATGGTTAAGATGTTTGTTTTCTTGTTATTGTCGGTGAATCATGTTACTGAACTAACTT CTTTTTTCCTGTCCATAGGTGGTTGATTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTCGCCTTTGTTGAGTT TACAGATGAAGGTAGCATTTCCATCAAATATATGTGATTTATATGCTGTTTTTATTATTGGCATTTCACCGTATTAACAT TGTTGTGCTTGCAGAAGGTGCAAGGACTGCTTTGAACCTGTCTGGAACTATGCTTGGATACTACCCACTGAGAGTGCTAC CTTCGAAAACTGCCATTGCACCTGTTAATCCAACTTATTTGCCCAGGGTAATGTTTTGTTTCTTAGAAATTCGTATTACA TGTATCAGAAGATGATTGAACAGAGTGAACTGATAATGCATTTGTTTTCTGTCTTTCTGATGGTGCTACATTTCTTAGTC TGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGGTAGTTAGGTTTTGATACTTCC TTAGAATCTGCTTGGATGAACTATGTGGTCTTTTTCCATTTTGTATTGCAGCTATGCAGCAATCAAAGCTCGATATTCTC AATAATGTATTTTCCTGTTACTGATGCAGCTTACTCAATCTGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTT TGTAGCTTTTCATGAAACAAGGCCTATCTTGTCTATTGTTGGTTGAATTTTTCAGCTTTTTAGATATGTTCCTTTATTTG CCATGCATATTTATCAATAGCACGCGATAGCGGCGCTATAGTGCCGTTGCGTAGAGTAGTGGACCCCTTCCGCGACGGGA TCGCGGCCGCGAAATCCCGCTATTCGCGGTCAATAGCGGCCAATAGCGGCCTTCCCTTGTATGGGATTTCATTTTTGGGG GTCATCCGCGACAGGCCGTGATCCGCGATTGACTACTATGTTGCCATGATCATCTAGGTTTTGTATTCTAATGGTTGTTG TCAGTTGAATGTAAGTATCTTATTTTTTCGATCATGTTCATTTGTTCATCTAGGTTCAACGGTTGAGGCTTCTTGGGGAT CACAATCATTCAACTCGAATTGCTTTTGTTGAGTTCAAAGTGGTAATTACTCACTAACTTTCACTTGTCTTATTTTTATC TACTTGTACCTGGTTTACTTAGCTATAACCCTCAAATTGAGTGGTACTTCTGGCTTTGCATTAGTCATTTGCGGCCATGT GGTTATTTCCCCCCCTCCCCCCAGTTCCCGTCCTCCCCAAAAAGAAGAAAAACAATTCCAGTCTGTTTGTACTTTCTACT TCTTCTGGGTGCACCCCTTTCAATTATGGCATTTCATGCTTCCATAGTAATAGTAACTGCACATTTCCCCTTAAAACAGT TCCAAACAGTCCTTCATTTGATAAAAGGAATCAAGAGAAAAACTGAGTAAATCTTGATGTGTTATTAGGATGACAGGAGC TGTGTGTAAACTGTAAAGAGAGCTGCTAAGATCCTTCTACTCTTTTTTTCGTTTTGAGTATGATAGCAAGCTACATAAGA AAACACCCGTGCACTTTTTTTTTTAATATTAAATTTATGATTGTTAAAACAATATCTACTGTTTATAAGTGAAAAAAAAA ACTTGCACCTCCTTTTCTCATTTCTTCTTATTTCTTTCAAAATTTTATATACTGACAATTTTTTGTAAAACAAAACAAAG GAGAACAGTAAACATTTCATGGTGAGACTATTATTAAATGTTCCAAATGAATGACTTCGTCTCGCTTTTCATTCATTAAG ATTTGGCCAGTTTCTGTAAATCTGTATCTTCGTCAAAGGGTTCGATTAAGATTTGGCCAGATTAAGTTCTCTCGCAATTT CTACTCACCACAAGTGATTAGCATCCTTTTTTGTTTCTTTTTTTTTTATCAACAAGCTGATGCTTTTTTCAAACTAGAGG AGTGATGTTTTGGTTGGTTCTGTATTCAAAGTCAAGCTTTAACTGTTGATATTCATGCTTAGGAAATAGGGAAGACGAAA GACAATCTGATGAAATTGATTTTTTTATAACAAACATTAAATTACAAAAAATCCATTAATGAAAATTATATTAGACACAA AGGCATTGAGTTTTATTGTTAAGAGAAAAGCGGTAGGTCGTAAAATATTCACAAGTTACTCTATTTTGCACAATATTGTT TGCGACGCCAGAGCCAATCTGAGTGTATTGTGAAAATAAGCTGTGTTAGAATATAAGTAAATTGTATGTGTAAGTACATT GCATTGATTAGGTTGAATTGTATTGTTATGGTAATGGTAATTAGGATAACTGTAATAAGTGTAGTAATTACTTTTCTATC TATGTACTATGCTGTGTAATTGTGACATGGAATTCATGATATGTCGCTCTTTTCCCGCTGTCGACATGTTATCTAGAGCC TAAAAGAGTGCCAACCATGAGCCCACTGCCTAACCATGTTCATTTTCTTCTACAACAATCATCTTTCCCATCGAAGTCTC TGCCATCTGTCACCAATCTCTATCACTAGATTTTTATTTCCACTGACTGTTCTGGTAAAAAATGATCACCAGTTCACCAC TCGACTTGTCACCAACTGTCCAATCCATAGCTAAAGTTTCCAGCCCAATCACCTAGCCGTGTGCCAACATGCGCCATATC TCTCTAGATGCCATTCTGATTTCTCCACTTGTGTGCACGACTAGATGCACATGAAGGTGCGTGGGGCCACCTCTTACATC ACCGTTTCTCATGTGTGGATGCCAGCCTCAACCGTATGTAGTGGTAAATTTGTTCATAATCATATAAAGTAAAAGTTGTT AATTGAATCTCAGATTGGGTGTTCCCCTTATTTTCACAACTATTTATTGAATAATAATAATGTCAAAGTACTCTAGGTGG CTCCTTCTTTGGAAATAATCATCTCCAAATTCTGTGAGAGAATGATGGCTACAATTTTTACTTTTTTCACCTTTGTTTGT CTATGGAGTGTGTACAGGAATTACTATAATACAGGCCTGACAAAGTCCGTTGGTTTCCTGTTCCTCTAATTGCTTACTAT AAGCTGCAGCATGGAGGTGTTGTACAGCCAGTTTTCTATGTTCTAATTAGAACAATGAGAGGGAAGAAAATAGGCAATTG AATGAATTGATGTGTCTGGGGAAGGTTCTAACTTGTAAGTGGCCGTTGATGGTCTTTGATCTGGTACTTGAGTATGCTTT TGACCTTTAGAACTAAGAATGGGAGAATACAGTTTTTGATGCTTGATTATGTTGCATACGTCAGCAAGGCTCAAACCAGT TGGTAATATAAATAACAGGAACTGATGTAGTTAGCTAATGAATTAGTTGAGAGGGGGATCTAGAGGATATAGTTAGTAGG ATGGAGCGAATAGTTAGGACTTGGTTTTGGAGAGAAATTTTGGGAGGGAGAGAACCAGGGTGTCTCAAATACCTAGAGTG TAATAGAACTTCAGTTTTGTTCTATATTCTGACCCAGTTGTAGTATACTACACATTACAGTTTCCATGTACTATGTTCCT GTAGCTCTGGTAATCTAGTCAGGTGCTTATCCCTTTCTGTATATTATATGGTGAGTCTCACTTTGGGTAATGAAAGGGCA TTAGTACTTAAGCATGACCTCAATAAGGTACAATTTGGTTTTCGGGTATCACTTAGTGTTGGTTTGTGTCAAATAACCAA TTATCCCAAAAGCTTAAGCTTTAGGTAAAGGCCACATAAATGGGTTTATATTATATTCTAACACCCCCTCATGCAAGAGC CCACTTGGGCTTGAAGCGTGGACAAAGTACTGACCCACCAACCATGAGCTGAACTTTTTATTAAGAATTGGGGGTGGCAA GGATCAAACTCTAGACCACTTAATCATAGAGGGCTCTGATACTATGTCAAGAACCAATTATCTCAAAACCTTAAGCTATT GGGTAAAAGATTATTATAACAGTTTGTTTCCATTTGTAGTCACCCATGCTTGGTCTTCCTTAGTTTGAATTGGAAGAGCT ATTAAGCTTGTTGGACCTTGTCTGGAACTTAATGATTTCAACCTAACTACTTTTTTAACGATGAATTTCAGTTTATATAG ATAATTTTCTATCATACAAGAATCGTATTATGAACTCACTTTGCCCCAACACCATGCATCCAAATATTATTTATTTAACC TTAGTTTCATGTTAATGGAGTCATACTCAACCTTCTGCTGTTCCTCCAGGTTTGTGACCTTGTCTAGGCTAGCTATTATT TTTCTTGGTTGCTTGCCCAATGCGGTTGAGACTTGAGAGGAGGATCTAGAGGGTATAATTAATAGGAAGGAGCGAATAAT TAGGATTCGTTTTGGAGAGAAATTTGGGGAGGGAGAGAACCAGGGTATCTCAGATACCTAGAGTGTAATAGAGAATCTAT ATCAATGAACACTGTTTCTTTCTATACTTTGACCCAGTTCTAGTATATTACACATTACACTTTGCTACTTGCTGTATATT TTATGGCGGGGTCTCACTTTGGGTGATGAAAGGGAGTCATACTTGCACATGACCTCATTAAGGTACAATTTGGTTTTCAG GAATCACTCGATAGTGATTCATGGATCAACCATGTTGGTTTGTGACCTCATTAAGCTATATTGTTGAATGTTATAAAGCT CCCACACTAAGATAATGAGTATTTTTTATGTTTGTAGGTCGTGCATTTATATATCATCTTAGCTTCGTTAGTTCGAATTT CTCTCCCTTTGGAAGATACATCTTTACAGTTTTTCTTCACTGGCTGTGGTCCTGATTTTTACTCCCCTAGTAAAATGTCA TATTAGGACATTAATGATTAAAGTTCTTTATATCTTTGATAGGCATCAAATCTTTTGCTTTTATGAATTATGTGTCGTGC TTATATGTAAGAATGAACAGCTGTCTCAAATATTCTTGGGCTACTATTTGTTGCACCTAGTCTCTTTTCTTATTTGGTTC TCTGAAGGTTTTCTTTGCCTCATACTTTCAGGCTGAGAGTGCAATTGCTGCTCTGAGTTGCAGTGGTGTGATATTGGGTT CACTGCCTATAAGGTTGGATCAATGATTTTTCCTTTGATTTATAACTTTCCAAAAAACTGCAGCAACTCTCTTAATTTTG TGACAACCAATCTCATGTTTGGTATGCAGGGTAAGTCCATCAAAAACACCAGTACGGTCTCGCTCTCCTCGCTCTCCAAT GTCTCGCTATCCTCGTTCTCCAATGCACTGAATCATCCTTCCATGTATGTTTCTGGGGTTGATTGCTGCTGAGATATATT TACATATATACATACATAGAAACAGATACTGTTGCCCTTGAGTCTTGCAGTATGGTATCTTTGTTTCTCGTTGGGATTAT GAGTTATGTGTAGAGTTGGATGGCATTTTGAGGATCTTGAAGGCTTAATTTATGATGGGTTGGTCTTGCATAACCAGAGG ATTTTATGGTTGGATGTTTATAACCTGTGGAGTTTATAGTTTATTTAAAGAACCATATTACAAAATTAGTTTATGTTTTT AAGTTGAAAACCATATTTGATGCGAATTCTTGTGGCCCCAACGGGAAATGAGCTCAGCCCCTTCGTCGGCATTCAGTTGG GGACACTTGAAAAACAAACGTGATATTTTACTGCCTGCAATTCTGTAATTGATACTTATTTTAATCTTTCTGGTAAGCCA TATGAAGTAGTGGCTGATTCTGTTATAATGGTCAACTTGGTGAAATTGTCTTTTGCCATCTACTGCTTGTCACCATTGAT CAACTGACCACTTCAGCGTTCGCAGGGTAATATCAGAAGCTACACTTTGTAGCTTTTTCTTAGAAGTGATTATGA
CDS sequence (LotjaGi1g1v0295600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGCTGAGAATGCTGGAGCCAAAATCGGTTCTTCCGGTCAGAATTTGGACAACAACAACACTGTTGTGTCAGC TGAGGACTCAAGTGAGGTGGAGAAATCGAAGACTAGGACCGATCAGAATCTGAGCAACGGTGGTTTCAACCATGAACATC ATCCTGGGAACATAGCAGTTCCTAATGGCAACTACAGCTATAATGCTCAAGTGGGTCAGATGCAAGCAAATGGTGTCCAG AACCAGCAGCTTGTGATGAACAATGATGGGTATGGGGAGAATGGGGATGAGAGTTTCAAGCGTGACATGAGGGATTTGGC TGAGCTGTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCTTCACTGACTAATAGCCATGGCTATTTAGCTG GACCTAATGCTGGGTTTGGTTATCCTAACAATTTTATTCTGCAAAATGATTTTGGACAGACTAATAGAAGGAGGAAGAAT GTCTATAATTCTGGGAAGAGAAGAATTTTTCATAAGATAGAAATGGAGAAAAGGGATGAGATGATTCGGAGGACTGTTTA CGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCGGCTCTATTTCTTAACTGTGGCCAGGTGGTTGATTGCC GTGTATGTGGGGATCCTAATTCTATTCTTCGGTTCGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTG AACCTGTCTGGAACTATGCTTGGATACTACCCACTGAGAGTGCTACCTTCGAAAACTGCCATTGCACCTGTTAATCCAAC TTATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGCTTACTC AATCTGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATCACAATCATTCA ACTCGAATTGCTTTTGTTGAGTTCAAAGTGGCTGAGAGTGCAATTGCTGCTCTGAGTTGCAGTGGTGTGATATTGGGTTC ACTGCCTATAAGGGTAAGTCCATCAAAAACACCAGTACGGTCTCGCTCTCCTCGCTCTCCAATGTCTCGCTATCCTCGTT CTCCAATGCACTGA
Protein sequence (LotjaGi1g1v0295600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNIAVPNGNYSYNAQVGQMQANGVQ NQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDFGQTNRRRKN VYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTAL NLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHS TRIAFVEFKVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSPRSPMSRYPRSPMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 56 | 56 | - | – | |
| PANTHER | 6 | 368 | 363 | 5.3E-191 | – | |
| PANTHER | 6 | 368 | 363 | 5.3E-191 | – | |
| MobiDBLite | 10 | 29 | 20 | - | – | |
| Pfam | 111 | 124 | 14 | 3.1E-5 | ||
| Gene3D | 172 | 261 | 90 | 1.0E-16 | ||
| SUPERFAMILY | 179 | 261 | 83 | 3.22E-18 | ||
| CDD | 182 | 261 | 80 | 2.29013E-56 | ||
| ProSiteProfiles | 184 | 259 | 76 | 13.686 | ||
| SMART | 185 | 255 | 71 | 9.8E-15 | ||
| Pfam | 186 | 250 | 65 | 2.1E-12 | ||
| Gene3D | 266 | 364 | 99 | 6.9E-15 | ||
| SUPERFAMILY | 271 | 369 | 99 | 2.04E-17 | ||
| CDD | 277 | 358 | 82 | 3.50048E-57 | ||
| ProSiteProfiles | 281 | 357 | 77 | 12.594 | ||
| SMART | 282 | 353 | 72 | 3.0E-13 | ||
| Pfam | 283 | 350 | 68 | 3.0E-10 | ||
| MobiDBLite | 353 | 377 | 25 | - | – | |
| MobiDBLite | 354 | 368 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0295600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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