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IPR009818 is a PAM2 motif.
<p>The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for [interpro:IPR002004]. It has been found in a wide range of eukaryotic proteins [[cite:PUB00019987], [cite:PUB00026383], [cite:PUB00103331]]. Strikingly, this motif appears to occur solely outside of globular domains [[cite:PUB00019987]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Splicing factor, arginine/serine-rich [Medicago truncatula] gi|357464151|ref|XP_003602357.1| | 5 | ||
| – | Splicing factor, arginine/serine-rich [Medicago truncatula] gi|357464151|ref|XP_003602357.1| | 12 | ||
| – | Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| | 9 | ||
| – | Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| | 9 | ||
| – | Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| | 9 | ||
| – | PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear-like [Glycine max] gi|356556922|ref|XP_003546769.1| | 13 | ||
| – | La-related protein [Medicago truncatula] gi|357475507|ref|XP_003608039.1| | 5 | ||
| – | Polyadenylate-binding protein-interacting protein 11; TAIR: AT4G10610.1 CTC-interacting domain 12; Swiss-Prot: sp|Q9S7N9|CID12_ARATH Polyadenylate-binding protein-interacting protein 12; TrEMBL-Plants: tr|G7J8B0|G7J8B0_MEDTR CTC-interacting domain protein; Found in the gene: LotjaGi1g1v0295500_LC | 6 | ||
| – | Polyadenylate-binding protein-interacting protein 11; TAIR: AT4G10610.1 CTC-interacting domain 12; Swiss-Prot: sp|Q9S7N9|CID12_ARATH Polyadenylate-binding protein-interacting protein 12; TrEMBL-Plants: tr|G7J8B0|G7J8B0_MEDTR CTC-interacting domain protein; Found in the gene: LotjaGi1g1v0295500_LC | 6 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G32790.1 CTC-interacting domain 11; Swiss-Prot: sp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 11; TrEMBL-Plants: tr|V7AS09|V7AS09_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0295600 | 17 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G32790.1 CTC-interacting domain 11; Swiss-Prot: sp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 11; TrEMBL-Plants: tr|V7AS09|V7AS09_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0295600 | 17 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G32790.1 CTC-interacting domain 11; Swiss-Prot: sp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 11; TrEMBL-Plants: tr|V7AS09|V7AS09_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0295600 | 17 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G32790.1 CTC-interacting domain 11; Swiss-Prot: sp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 11; TrEMBL-Plants: tr|V7AS09|V7AS09_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0295600 | 17 | ||
| – | CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 | 11 | ||
| – | CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 | 11 | ||
| – | CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 | 11 | ||
| – | CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 | 11 | ||
| – | CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 | 11 | ||
| – | CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 | 11 | ||
| – | Polyadenylate-binding protein; TAIR: AT3G14450.1 CTC-interacting domain 9; Swiss-Prot: sp|Q9LRR6|CID9_ARATH Polyadenylate-binding protein-interacting protein 9; TrEMBL-Plants: tr|I3SRJ2|I3SRJ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0037900 | 15 | ||
| – | Polyadenylate-binding protein; TAIR: AT3G14450.1 CTC-interacting domain 9; Swiss-Prot: sp|Q9LRR6|CID9_ARATH Polyadenylate-binding protein-interacting protein 9; TrEMBL-Plants: tr|C6TDF4|C6TDF4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0146200 | 17 | ||
| – | Polyadenylate-binding protein; TAIR: AT3G14450.1 CTC-interacting domain 9; Swiss-Prot: sp|Q9LRR6|CID9_ARATH Polyadenylate-binding protein-interacting protein 9; TrEMBL-Plants: tr|C6TDF4|C6TDF4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0146200 | 17 | ||
| – | La; TAIR: AT3G19090.1 RNA-binding protein; Swiss-Prot: sp|Q9LHL3|LRP6C_ARATH La-related protein 6C; TrEMBL-Plants: tr|G7JMI2|G7JMI2_MEDTR LA-related protein 6 LA RNA-binding domain protein; Found in the gene: LotjaGi4g1v0071000 | 25 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 4.35 |