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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314600 |
| Transcript ID | LotjaGi1g1v0314600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT1G76010.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein; TrEMBL-Plants: tr|A0A067KSQ6|A0A067KSQ6_JATCU Uncharacterized protein; Found in the gene: LotjaGi1g1v0314600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75957044..75961452) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGCCCATTGGGTGAGGATCCAGGAGAAATTGGCGGTCTGATCGGCGATAAGACCGCGACCTCATAGCCCTACTCAT CAGCCACTCTTCTCTCTCACACACACTTCTCTCTCTTCCTGCGTGCTTCTACTTCTATTCTCTTCTCTTCTTCACTTCAA CCACGCCACCATCCCTTTCTCCCTTCGCTTCGTTCGTAGCAGCATATTCCCCCAATCTACAAACCCCAACCCACTCTCGC TTCCATCAAACTCACCGCAACGGTTTCTCTCTCTCTCTCCAAACCCTATCTATCTCGATAACGCACACGCTAATTCATGT TTTGTTTTCTGATTATCTCGATTTTGTTTTTCAGATGGATAGGTATCAGAGGGTGGAGAAGCCCAAGGCAGATAGTCCTA TCAACGAGAACGAGATACGCATTACCAGTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGGTA ATCTATCCTTATCAGATTGTTAACTGCTTCAATTTGTTTCGTGAAATTGTTAGAGATTTGAATTATTTACACGAGTTTTG AATAAAATCTCACACACAAGTCACTGATTGGAGTGAGTAGTGACTAATTGAAGCATGACATCGTATGAAAACATAAACAA TGAGAAGAGTTAGTTGAAAAACGGTTATTAGGTAAAGAATCTGATTACAGAAAGGGTGTATTGAACTTTTCGGCAGCAAA ATTGGTGAAGAAAATGGTTAAAATCGCAACGAGTTTACGAGATTGATGAAAATTTTAGAGAGACAATAGATTGAGAGAGT GAAAAGTATGTGAGTGATAGTATTTTTGTTGGTAGGGGACAGTGATTTGTATCTGACATGTGGAGTCATAAGTTAAGGGA ATTGTTTCTTCCTAAAGTTTTGCTACTTTGCAGAAGAACTGCTAACCAGACTTTCTATTATATTTTTCTAAAACTTTATG TTTTTCTCAAAACTTCTTCCTAATCGTATATTAACCCCTGCACTGGACACTAGTGGAAATTTAAAGGATAAAGTATCTTT AGGAAAATTACATTCATGCAGGTTCGTGAACAAAAAAAAAAATTACATTCTGTGAACTATCTTTAGGATATTCATTTTCC ATCTTAGTCTGAGGCAGAACCTCTTTAGGATAACATTTTCCCTCTTGGGCAGTCCAGTTTTCTCTGTATATTTTCATTTT TACTTTGTTTACTTAATCATTTTACATTGATTTTCTGTTGGTGTGAGGATTTTACCTAATATTTTGTTAAATCTGATCCA AACATGCAAGTTTCAGTTTATCTAGAATCAACTAATATTTTGCCTTTTCCTTTTTTATGTTTCTTATTGCTCTGTATGTA TTTTATGCAGGAGAAGGGATCTGATGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTACTG AGCTGATCAAGGTGGGAGTGTAGATATCTTAACGGAGTATGTGGGTTGGCATTTGCTTATCATACTTTAGTGACTTTTTT GTATTCTTGTTTCAGAGAAGGATTGTTGGTCTGCACCAGAACACTCTGATTGGATCAACTGATATAACTGACACATGGGA ACCACTAGAAGAAGGCCTTCTTCCGTATGTATTGTTGTTTCTTCTATGCTACCCCATCAACACTTAATTTCTGTGTGCAT GGGAGTGATTATTTTGTTTTATTTGTTTTACTTGCTCAGTTTGGAGACTACTCGCCATGTTTCTATGATCACAATTAACT TGTCAAAGAAAGAACTGGATACATCCTCCACAGGGTAAGAACTTTATGTTTTAATGGCAACATAGATGTTTTAAGGCAAG CTGCTAGTTTACTAGTAAGATTGGCTTAATTAGTGTTTTCATAAAAACCGTCTTTGTGAGTTTGCTAAGCTGTACTCGTC AATAATTTTTTTTACTCTATTCTTCTGGTAAACCACTTTGATGATGTTTATTCATTTTTTATAACCAATATGGTCATAGA TTGGTAAGCCATACCTCCTTGCTTTTGCAGTTCCACAAGTTTCAAGGTCCAGATAAAGTTCTAAAAACTGTATTTTATCA TATTGTGCCTGTCTGAGATAATTTAAATATGTTATTGTCAGTTAGTCACACTAGCATTATATAGCTTGTCGAATTGGGAA TGAGATAGGACGAAGAGGTCAGGTTTGACAGCTCGTATTTCAAACATAATTTCCTAGTTTCTAAAAAATTTAACACCATC TTAAATTTATCACAAAAGTAACCCTTTATCTCGTAAAATCTGAACAAGCGTTGTGCATTATACTAATTAGGTCAGTATAA GTTCATTTAAATTGACTTGTCATGTTTCCTTGTTTGACATTTGACTTTAACTTTGTATTTCAATTGCTGAGTTGAGGACA ATGGAACATATTTAGATCCTTGATTTCAAGGAGGAGTGAAGTAAATGCTATGTCTATCGTGCTGTTCTACTTATGTTATC TGGTTTTCATGCAGACTGATGGGACAGTTCGGATTTGTTAACTCTGCAGTCTAATAGTTTGCGGTGTTTATTTATTTGCA CTCTAATTTTTGGCTCGTGCTAATTGATTCTATCAAACCTTAATATAAATATTAAGGTCCAGTTATTATTTTAAAGTCTT GTTGTGTTCTGCATTGTGTTATAACTTAGTAAGTTACTGGAATATTGATATATGTTCTACAAGCAGATTTTTACATGTGC TCAGTTGTATTGACCAAAAGGCTTTTCCCCTGCCTCTGGTGTAAAACTGATTGAGTTTTTGTGAAGTTATACCCTCTGTT GGAAAGAATTAATTTTCATCCTCATGCAGATACCAACCTCCTCTTCCTGCTGATCAAGTAAAACCTTTAAATGAATATGA AGAGGATGGAGGTGAGTTAGTTATTTTCTTTTAATATTTCAAGAGAGTGAAAAACTCGTGTGATTATTTTGGCATGCTTA TTTGCTTACCATAATTTGATGTGATGCAGAAGGCTCCCCAAGGATGCGAGGAAGAGGGCGTGGTCGTGGAAGGGGTCGGG GTAGAGGTATTGTTATGCACTTTGTTTCACTTATTTCACTGTAGTTGGCTAAAGATTAAAGATTGATTCTGAATTGTTTT TTTCAACTCCTTTATTCTGTTGTGGTTTCTTTTAAATTGCATAAGTTGCTTATAAGGATACAATATTTTCTACTTAGGAT TTTACAATAATGGGGGTATGGAATATGGTGGTGGTGATGGTTGGGACGGTGGACGTGGCTATGGTGGCAGAGGCCGTGGC TTTGGTCGTGGCAGAGGTCGTGGTTTCCGGGGACGAGGACGGGGAGGCTATGGTGCCCAGCCAGTTGGGTACTATGACTA TGGTGAATATGATGCACCACCTGCCCCACGTGGTAAGCATGCAACTTCAATTCTTATATTTTGCTGTGCTATTTGTGTTT GCATGGTGCCTCTTTTAAATCAAGCTACCGATAAATGTCTCTTCTATTGAATTCACCAACTTTTTCCATGTCCTTTTAAT TTCCTCTGCACCCTGTATTCAAGCTACTGGAGTGGCATGGTAGTAATTTTTGTTTGATGGTTTTGCAGGACGAGGACGTG GAAGGGGAGGAAGAGGCCGTGGTCGTGGTCGTAATGCAAGCTGGGGAGTTGCTGCTTGATCGCATGGGTGTTGGTTATGA TGTATATTTTCAGTTAGAAGATGGTTTTGCCTCTTTGCTTAGTTCTTTGTGGAATCTGCTTATACTATTTTGGTATTATT TGAAGCGTTCGGGTGTTGCAGTCATGTTCCTGCAGTTTTGTTTTTCTAGTTCTTTCCTTTGTAACAACCTCTATAATTTC AAGTTCCGAGGTTGAGTTAGATATTCATATATTTCCTTTGTTTAGGGAGTTTCAAGAAAATTAAATTTGTATAATTTTTT TAAATAGAAGTTACTGGAGTTGAATTTATCTCAAGGTCGCTTTAGAAGGTATGCACTGAAATTTTGGATAGGAATCGCAG TGTCATATAGTGTCTCACCTTACTGAACGCCAGTTCGAAGAGTTTAACTTCCTACTCTGGATTTTTAGAAACTTGATAAT TCTCTAAAAATGAAAATTTGAATTCTAGCAGCACTAACTTTTGTCCATCCCCATCGTCAGTGATGTATAGTTAATGCTAA TTTGCTACAACTTTTGTTTGCTATATTTTGAAAAAATTGAGTGAATAAGAAAACTCGTTGATGCCTAAAATGTTTTTTTT TCTTTTGCATTCAGCCATAGTGTAAATGGAAGTCAGTAAGAGATACTAAACACGTCAACGAAATAACCTCAAGAGGCGCT GTTGCAAAGTTTTTGCATTTTTTCATGTTCTTTACTTGTTTTCCTGGACATGGTCATGGATGGCTGCTGACATTAAATCG CAACCGAAC
CDS sequence (LotjaGi1g1v0314600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGGTATCAGAGGGTGGAGAAGCCCAAGGCAGATAGTCCTATCAACGAGAACGAGATACGCATTACCAGTCAAGG AAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGGAGAAGGGATCTGATGAAATTGTTCTCAAAGCAATGG GACGTGCAATAAATAAGACTGTAATGATTACTGAGCTGATCAAGAGAAGGATTGTTGGTCTGCACCAGAACACTCTGATT GGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCTAT GATCACAATTAACTTGTCAAAGAAAGAACTGGATACATCCTCCACAGGATACCAACCTCCTCTTCCTGCTGATCAAGTAA AACCTTTAAATGAATATGAAGAGGATGGAGAAGGCTCCCCAAGGATGCGAGGAAGAGGGCGTGGTCGTGGAAGGGGTCGG GGTAGAGGATTTTACAATAATGGGGGTATGGAATATGGTGGTGGTGATGGTTGGGACGGTGGACGTGGCTATGGTGGCAG AGGCCGTGGCTTTGGTCGTGGCAGAGGTCGTGGTTTCCGGGGACGAGGACGGGGAGGCTATGGTGCCCAGCCAGTTGGGT ACTATGACTATGGTGAATATGATGCACCACCTGCCCCACGTGGACGAGGACGTGGAAGGGGAGGAAGAGGCCGTGGTCGT GGTCGTAATGCAAGCTGGGGAGTTGCTGCTTGA
Protein sequence (LotjaGi1g1v0314600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRYQRVEKPKADSPINENEIRITSQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKTVMITELIKRRIVGLHQNTLI GSTDITDTWEPLEEGLLPLETTRHVSMITINLSKKELDTSSTGYQPPLPADQVKPLNEYEEDGEGSPRMRGRGRGRGRGR GRGFYNNGGMEYGGGDGWDGGRGYGGRGRGFGRGRGRGFRGRGRGGYGAQPVGYYDYGEYDAPPAPRGRGRGRGGRGRGR GRNASWGVAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 244 | 244 | 7.0E-139 | – | |
| PANTHER | 1 | 244 | 244 | 7.0E-139 | – | |
| Gene3D | 14 | 118 | 105 | 1.3E-35 | ||
| SUPERFAMILY | 16 | 129 | 114 | 9.81E-28 | ||
| Pfam | 19 | 83 | 65 | 2.8E-18 | ||
| MobiDBLite | 117 | 166 | 50 | - | – | |
| MobiDBLite | 135 | 151 | 17 | - | – | |
| MobiDBLite | 189 | 250 | 62 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0314600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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