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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0331600 |
| Transcript ID | LotjaGi1g1v0331600.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier; TAIR: AT5G51050.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q8BMD8|SCMC1_MOUSE Calcium-binding mitochondrial carrier protein SCaMC-1; TrEMBL-Plants: tr|K7KLA3|K7KLA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78818901..78821164) extracted from Lotus japonicus Gifu genome v1.2.
AACAACAACAACAAGAACCACACGATGGATCATGTTCTTCTGGCATTGGGGGAAACGAGAGAAGAGAGAGATGTTCGAAT CCGCAGCTTGTTCAATTTCTTCGATGGGAAGAACAAGGAGTATTTGGATTATGGCCAGATAGAATCAGGGTTGTCAGCAC TGAAAATCCCACCAGAGTACAAGTATGCGAGGGAGCTTTTCAAGGTGTGTGATTCCAATAGTGATGGCAGGGTGACTTAT CATGAGTTCCGCAGGTACATGGATGATAAGGAATTGGAGCTTTACCGCATCTTTCAAGCCATTGATGTTGAGCATAGTGG CAGCATTCTCCCTGAAGAGCTCTGGGATGCACTTGTTAAAGCTGGTGGTGTATTCTACTCTTTCTCCAATTTACATATCT CTGTTCCTTGCTATAGGCTACTTGTTCATAGTTTTGTTATTTTCTCCTGCTACATCAACTTTTTAGTTATCCTCATAGCA GTGATTGCCTTCATGTTTGTGCAGGATCATTTTATTTCCAAGTAACTGGTCACCTTAATTGTTTACTTGTAAATAGGAGA TTGGTTGAAGTTTTAGAAATAGTAATCATTTAATGAAAAATAGTGGTTCTCAGTTAGCCATCCCTGCTTTCTCATCAAAA AGTTGTTTTATGCGAGTGGCTGTCTATCCTATCCCAAGGTTAAACAATCCTAACTTAGGTGGATTATTAATTCTATCTAT ATAGAAATTGAAGGAAAAGTTTAAATTTTAAGTTATTTTGATTAGACTGGTCTACACTTATTTTGATCAGACTGGTCCAT AAGTTTTAAGAAGCAATCATTTAAGAATTATTCTTTAAGTAATTAAAAATATTTAATGTAAATCTTAATCATTGTGTTTT CTTAGCAAGACATTTTTTTTTGTTTAAACTTTTTAGCTTTTCAAAATATTTAATAGGATCACTATAAACAGGTTTGTGGA ATCTACAGTTTGGAGAAGGTTTTTTCACTTTTAATAGGACTTTGTAGCCAGCTCTGAAAGTTTTTTCACCTTCAGATATC TTATATTCCTGCACAATTTTAGTGAACTCTTCTTGATATGTGTCTATTTTGCTGATGTATTGTTGCATTTTTTGTATAAT TTTTTGTTTGGGGTTATTTCTTTGAAACTACATGATGCTTGGGATTTGAGAAGCCCGGTTGAACCTTTGATGGTGGATGC TGTATTGTTTTTGTTATTCTTTTGCTTGCTTAGTTTCTTGTGTGCAATAATCTATCTGGCCTCTGCCCATTTAGTGAATA TTGAAGATGGTATTCTTTTATCTTTTTTTGTGGAGGCTTTTTCCATTAAATTGTTTTGCTTTTCCATATCATAAGCTATT GCAGCTTCAATGCTGCAGGGATTGAAATGGATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAACAAT GGGATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTATATCCTCATGAAGCAACAATCGAAAATATATATCACCA TTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGGACCGGAGCA AATATTTTCTTGCCGGAGGGATAGCAGGTGCTACTTCTCGCACTGTAACCGCTCCTCTTGATCGTCTGAAGGTAGTCTTA CAAGTTCAGACCGCACGCGCTTCTATTGTGCCGGGAGTGATGAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTACCG CGGTAATGGATTGAATATTGTGAAGGTAGCACCAGAAAGTGCCATCAAATTTTACGCCTTTGAAATGCTGAAAAATGTGA TCGGGGATGCTCAAGGAAGCAAGTCAGATATTGGTACTTCTGGGAGGCTTCTTGCGGGTGGAATGGCTGGTGGAATTGCA CAGGCTGCTATCTATCCACTGGATCTTATCAAAACTAGGTTACAAACTTGCGCCTCTGAAGGGGGAAGGGCTCCTAACCT GGGAACCCTTACAAAGAATATATGGGTTCACGAAGGACCTCGTGCTTTTTACAGAGGGCTTCTTCCATCTCTGATTGGTA TGATTCCTTATGCAGGCATTGATCTCACTGCTTATGATACCTTGAAAGATTTATCCAGGACATATATTCTTAAAGATACT GGTAAGTTACTCATGCAGCCGCTAAACTTGCTGAATTTATGTGTTCTGAGTAACTGATTTGTTTAGTTGATTGACTCTCT TGAAAATTTTCCCTTGAAGAGTGA
CDS sequence (LotjaGi1g1v0331600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATGTTCTTCTGGCATTGGGGGAAACGAGAGAAGAGAGAGATGTTCGAATCCGCAGCTTGTTCAATTTCTTCGA TGGGAAGAACAAGGAGTATTTGGATTATGGCCAGATAGAATCAGGGTTGTCAGCACTGAAAATCCCACCAGAGTACAAGT ATGCGAGGGAGCTTTTCAAGGTGTGTGATTCCAATAGTGATGGCAGGGTGACTTATCATGAGTTCCGCAGGTACATGGAT GATAAGGAATTGGAGCTTTACCGCATCTTTCAAGCCATTGATGTTGAGCATAGTGGCAGCATTCTCCCTGAAGAGCTCTG GGATGCACTTGTTAAAGCTGGGATTGAAATGGATGATGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAACA ATGGGATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTATATCCTCATGAAGCAACAATCGAAAATATATATCAC CATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAGCAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGGACCGGAG CAAATATTTTCTTGCCGGAGGGATAGCAGGTGCTACTTCTCGCACTGTAACCGCTCCTCTTGATCGTCTGAAGGTAGTCT TACAAGTTCAGACCGCACGCGCTTCTATTGTGCCGGGAGTGATGAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTAC CGCGGTAATGGATTGAATATTGTGAAGGTAGCACCAGAAAGTGCCATCAAATTTTACGCCTTTGAAATGCTGAAAAATGT GATCGGGGATGCTCAAGGAAGCAAGTCAGATATTGGTACTTCTGGGAGGCTTCTTGCGGGTGGAATGGCTGGTGGAATTG CACAGGCTGCTATCTATCCACTGGATCTTATCAAAACTAGGTTACAAACTTGCGCCTCTGAAGGGGGAAGGGCTCCTAAC CTGGGAACCCTTACAAAGAATATATGGGTTCACGAAGGACCTCGTGCTTTTTACAGAGGGCTTCTTCCATCTCTGATTGG TATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGATACCTTGAAAGATTTATCCAGGACATATATTCTTAAAGATA CTGAGTGA
Protein sequence (LotjaGi1g1v0331600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHVLLALGETREERDVRIRSLFNFFDGKNKEYLDYGQIESGLSALKIPPEYKYARELFKVCDSNSDGRVTYHEFRRYMD DKELELYRIFQAIDVEHSGSILPEELWDALVKAGIEMDDEELAHFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYH HWERVCLVDIGEQAVIPEGISKHVDRSKYFLAGGIAGATSRTVTAPLDRLKVVLQVQTARASIVPGVMKIWKQDGLLGFY RGNGLNIVKVAPESAIKFYAFEMLKNVIGDAQGSKSDIGTSGRLLAGGMAGGIAQAAIYPLDLIKTRLQTCASEGGRAPN LGTLTKNIWVHEGPRAFYRGLLPSLIGMIPYAGIDLTAYDTLKDLSRTYILKDTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 9 | 182 | 174 | 3.25E-35 | ||
| PANTHER | 11 | 375 | 365 | 2.2E-179 | – | |
| PANTHER | 11 | 375 | 365 | 2.2E-179 | – | |
| ProSiteProfiles | 14 | 49 | 36 | 6.758 | ||
| Gene3D | 17 | 94 | 78 | 1.4E-12 | – | |
| ProSiteProfiles | 50 | 85 | 36 | 11.975 | ||
| Pfam | 53 | 81 | 29 | 0.038 | – | |
| SMART | 54 | 82 | 29 | 0.013 | ||
| ProSitePatterns | 63 | 75 | 13 | - | ||
| SMART | 85 | 113 | 29 | 7.1 | ||
| Pfam | 85 | 143 | 59 | 5.2E-9 | ||
| ProSiteProfiles | 86 | 116 | 31 | 8.432 | ||
| Gene3D | 97 | 172 | 76 | 1.4E-16 | – | |
| ProSiteProfiles | 117 | 152 | 36 | 12.979 | ||
| SMART | 121 | 149 | 29 | 1.2 | ||
| ProSitePatterns | 130 | 142 | 13 | - | ||
| Gene3D | 181 | 374 | 194 | 2.3E-60 | ||
| SUPERFAMILY | 182 | 366 | 185 | 5.36E-49 | ||
| ProSiteProfiles | 184 | 267 | 84 | 19.788 | ||
| Pfam | 188 | 269 | 82 | 3.6E-22 | ||
| PRINTS | 189 | 202 | 14 | 5.4E-24 | ||
| PRINTS | 202 | 216 | 15 | 5.4E-24 | ||
| PRINTS | 242 | 262 | 21 | 5.4E-24 | ||
| ProSiteProfiles | 278 | 365 | 88 | 20.454 | ||
| Pfam | 278 | 366 | 89 | 7.0E-22 | ||
| PRINTS | 293 | 311 | 19 | 5.4E-24 | ||
| PRINTS | 338 | 356 | 19 | 5.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0331600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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