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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002048
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 472 results. Now displaying 1 of 10 with 50 rows per page. This search has taken 5.187s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v1739280.1
LjCCaMK RecName: Full=Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase; Short=LjCCaMKgi|116634228|emb|CAJ76699.1| calcium calmodulin-dependent protein kinase [Lotus japonicus] gi|122250440|sp|A0AAR7.1|CCAMK_LOTJA chr3 21980800 21987089 +
6 domain predictions
1 GO term
Lj0g3v0002839.1
n.a. PREDICTED: probable calcium-binding protein CML16-like [Cicer arietinum] gi|502154088|ref|XP_004509579.1| chr0 990586 991694 -
5 domain predictions
1 GO term
Lj0g3v0006589.1
n.a. Calmodulin-like protein [Medicago truncatula] gi|357484663|ref|XP_003612619.1| chr0 2546226 2546936 -
6 domain predictions
1 GO term
Lj0g3v0014889.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like [Cicer arietinum] gi|502116734|ref|XP_004495571.1| chr0 5741148 5742648 -
3 domain predictions
1 GO term
Lj0g3v0031919.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like [Glycine max] gi|356573145|ref|XP_003554724.1| chr0 10032683 10034643 -
3 domain predictions
1 GO term
Lj0g3v0041949.1
n.a. PREDICTED: calcium-binding protein PBP1-like [Glycine max] gi|356517229|ref|XP_003527291.1| chr0 13800072 13800351 -
3 domain predictions
1 GO term
Lj0g3v0041959.1
n.a. n.a. chr0 13800074 13800351 -
3 domain predictions
1 GO term
Lj0g3v0048629.1
n.a. PREDICTED: calmodulin-like protein 11-like [Cicer arietinum] gi|502123095|ref|XP_004497995.1| chr0 16421776 16424378 -
5 domain predictions
1 GO term
Lj0g3v0055269.1
n.a. calcium-binding EF-hand-containing protein [Arabidopsis thaliana] gi|18406507|ref|NP_566015.1| chr0 17804613 17805449 +
5 domain predictions
1 GO term
Lj0g3v0072889.1
n.a. Sodium/calcium exchanger family protein / calcium-binding EF hand family protein isoform 1 [Theobroma cacao] gi|508721276|gb|EOY13173.1| chr0 27172348 27174765 -
5 domain predictions
1 GO term
Lj0g3v0072889.2
n.a. Sodium/calcium exchanger family protein / calcium-binding EF hand family protein isoform 1 [Theobroma cacao] gi|508721276|gb|EOY13173.1| chr0 27172348 27177382 -
5 domain predictions
1 GO term
Lj0g3v0081669.1
n.a. PREDICTED: calcium-binding protein PBP1-like [Cicer arietinum] gi|502083083|ref|XP_004487354.1| chr0 31958254 31959344 +
3 domain predictions
1 GO term
Lj0g3v0093149.1
n.a. PREDICTED: calmodulin-like protein 8-like [Glycine max] gi|356535165|ref|XP_003536119.1| chr0 38921333 38921662 -
5 domain predictions
1 GO term
Lj0g3v0128979.1
n.a. PREDICTED: probable calcium-binding protein CML16-like [Cicer arietinum] gi|502154088|ref|XP_004509579.1| chr0 58316927 58318031 -
6 domain predictions
1 GO term
Lj0g3v0133059.1
n.a. Sodium/calcium exchanger family protein / calcium-binding EF hand family protein isoform 2 [Theobroma cacao] gi|508721277|gb|EOY13174.1| chr0 60810928 60816509 -
6 domain predictions
1 GO term
Lj0g3v0166139.1
n.a. PREDICTED: calcium-binding protein PBP1-like [Cicer arietinum] gi|502084187|ref|XP_004487642.1| chr0 79008450 79008734 +
2 domain predictions
1 GO term
Lj0g3v0172049.1
n.a. PREDICTED: calcium-binding allergen Ole e 8-like [Glycine max] gi|356524678|ref|XP_003530955.1| chr0 82542249 82544050 +
5 domain predictions
1 GO term
Lj0g3v0192369.1
n.a. PREDICTED: probable calcium-binding protein CML41-like [Cicer arietinum] gi|502153148|ref|XP_004509234.1| chr0 94012419 94013455 -
6 domain predictions
1 GO term
Lj0g3v0202749.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like [Glycine max] gi|356573145|ref|XP_003554724.1| chr0 100387011 100389265 -
2 domain predictions
1 GO term
Lj0g3v0214639.2
n.a. PREDICTED: probable calcium-binding protein CML44-like [Glycine max] gi|356547218|ref|XP_003542013.1| chr0 108787026 108788253 +
6 domain predictions
1 GO term
Lj0g3v0220129.1
n.a. PREDICTED: CDPK-related protein kinase-like [Glycine max] gi|356514017|ref|XP_003525704.1| chr0 112625518 112630987 +
2 domain predictions
1 GO term
Lj0g3v0225709.1
n.a. Calmodulin-like protein [Medicago truncatula] gi|357504115|ref|XP_003622346.1| chr0 116496178 116496936 -
5 domain predictions
1 GO term
Lj0g3v0225709.2
n.a. PREDICTED: calmodulin-like protein 11-like [Glycine max] gi|356573109|ref|XP_003554707.1| chr0 116496178 116496936 -
5 domain predictions
1 GO term
Lj0g3v0233429.3
n.a. calmodulin [Glycine max] gi|351721559|ref|NP_001238237.1| chr0 120866029 120868112 -
5 domain predictions
1 GO term
Lj0g3v0242759.1
n.a. respiratory burst oxidase 1 [Medicago truncatula] gi|58532639|gb|AAW78863.1| chr0 125915872 125918332 -
3 domain predictions
1 GO term
Lj0g3v0246259.1
n.a. Epidermal growth factor receptor substrate 15-like protein [Medicago truncatula] gi|357495659|ref|XP_003618118.1| chr0 127561334 127562496 -
2 domain predictions
1 GO term
Lj0g3v0250669.1
n.a. PREDICTED: calcium-binding protein CML38-like [Cicer arietinum] gi|502130435|ref|XP_004500649.1| chr0 129949841 129951059 +
5 domain predictions
1 GO term
Lj0g3v0289489.1
n.a. PREDICTED: probable calcium-binding protein CML15-like [Glycine max] gi|356566062|ref|XP_003551254.1| chr0 150336501 150337257 +
5 domain predictions
1 GO term
Lj0g3v0300509.1
n.a. PREDICTED: polcalcin Ole e 3-like [Cucumis sativus] gi|449445084|ref|XP_004140303.1| chr0 156150338 156150592 +
5 domain predictions
1 GO term
Lj0g3v0309139.1
n.a. PREDICTED: calcium-binding protein PBP1-like [Glycine max] gi|356517229|ref|XP_003527291.1| chr0 161470451 161470730 +
3 domain predictions
1 GO term
Lj0g3v0311049.1
n.a. PREDICTED: probable calcium-binding protein CML45-like [Glycine max] gi|356531760|ref|XP_003534444.1| chr0 162440972 162441836 -
5 domain predictions
1 GO term
Lj0g3v0333919.1
n.a. PREDICTED: 1-acylglycerophosphocholine O-acyltransferase 1-like [Cicer arietinum] gi|502157486|ref|XP_004510893.1| chr0 174760688 174769675 -
5 domain predictions
1 GO term
Lj0g3v0335859.1
n.a. PREDICTED: calcium-dependent protein kinase 20-like [Glycine max] gi|356537258|ref|XP_003537146.1| chr0 175976422 175977937 -
5 domain predictions
1 GO term
Lj0g3v0338119.1
n.a. PREDICTED: calcium-dependent protein kinase 13-like [Cicer arietinum] gi|502167676|ref|XP_004514214.1| chr0 177111184 177112878 -
5 domain predictions
1 GO term
Lj0g3v0359269.1
n.a. PREDICTED: calcium-binding protein PBP1-like [Glycine max] gi|356517229|ref|XP_003527291.1| chr0 189143586 189144889 -
3 domain predictions
1 GO term
Lj1g3v0268560.1
n.a. PREDICTED: probable calcium-binding protein CML44-like [Glycine max] gi|356547218|ref|XP_003542013.1| chr1 2991584 2992636 -
6 domain predictions
1 GO term
Lj1g3v0317990.1
n.a. PREDICTED: reticulocalbin-3-like [Glycine max] gi|356551375|ref|XP_003544051.1| chr1 3592490 3595638 +
2 domain predictions
1 GO term
Lj1g3v0365160.1
n.a. PREDICTED: calmodulin-like protein 5-like [Glycine max] gi|356562975|ref|XP_003549743.1| chr1 4155375 4157303 +
6 domain predictions
1 GO term
Lj1g3v0450070.1
n.a. PREDICTED: calcium-dependent protein kinase 10-like [Glycine max] gi|356507178|ref|XP_003522347.1| chr1 6037435 6042082 +
5 domain predictions
1 GO term
Lj1g3v0984330.1
n.a. PREDICTED: calcineurin B-like protein 4-like isoform X1 [Cicer arietinum] gi|502136323|ref|XP_004502645.1| chr1 12476976 12481898 -
6 domain predictions
1 GO term
Lj1g3v0984330.2
n.a. Calcineurin B-like protein 4 [Medicago truncatula] gi|357463925|ref|XP_003602244.1| chr1 12476976 12481898 -
6 domain predictions
1 GO term
Lj1g3v1091290.1
n.a. calcium-binding endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] gi|145334817|ref|NP_001078754.1| chr1 13732256 13736999 -
2 domain predictions
1 GO term
Lj1g3v1091290.2
n.a. calcium-binding endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] gi|145334817|ref|NP_001078754.1| chr1 13732256 13736999 -
3 domain predictions
1 GO term
Lj1g3v1318140.1
n.a. Biglycan precursor [Giardia intestinalis ATCC 50581] gi|253744368|gb|EET00588.1| chr1 15934898 15935311 -
2 domain predictions
1 GO term
Lj1g3v1386390.1
n.a. PREDICTED: calcium-dependent protein kinase SK5-like [Cicer arietinum] gi|502137246|ref|XP_004503020.1| chr1 16894656 16899064 +
5 domain predictions
1 GO term
Lj1g3v1386650.1
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357464889|ref|XP_003602726.1| chr1 17014882 17023703 +
2 domain predictions
1 GO term
Lj1g3v1386650.2
n.a. NADPH oxidase [Phaseolus vulgaris] gi|371767605|gb|AEX56133.1| chr1 17015249 17016792 +
2 domain predictions
1 GO term
Lj1g3v1387070.1
n.a. PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-like [Glycine max] gi|356527405|ref|XP_003532301.1| chr1 17122055 17126004 -
6 domain predictions
1 GO term
Lj1g3v2035110.1
n.a. PREDICTED: probable calcium-binding protein CML43-like [Cicer arietinum] gi|502132042|ref|XP_004501206.1| chr1 23809209 23810722 -
5 domain predictions
1 GO term
Lj1g3v2264830.1
n.a. PREDICTED: probable calcium-binding protein CML18-like [Cicer arietinum] gi|502150824|ref|XP_004508142.1| chr1 26542530 26543750 +
6 domain predictions
1 GO term