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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0364100 |
Transcript ID | LotjaGi1g1v0364100.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ERD (Early-responsive to dehydration stress) family protein; TAIR: AT1G58520.1 GDSL-like lipase/acylhydrolase superfamily protein; Swiss-Prot: sp|F4IBD7|CSCLA_ARATH CSC1-like protein RXW8; TrEMBL-Plants: tr|A0A0L9UHF1|A0A0L9UHF1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0364100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83991908..83995735) extracted from Lotus japonicus Gifu genome v1.2.
TTTCCTTGTTGAGTTAACTACTATTTTAACTTTTCTTTCTTTTAATCCTATTCCTCTAGGATGATGCAGAATATGCATGT AAGATGTTCAGCGGAAGTTTGGAACAGACTTGTAAGCCAAGCTTGGCGCAATGTTACTTTTGTGGAGGGACCACAAATTT TAAGCTAATTTCTCAAGACATAGATAGTATACATGCAAGAACAGGCTACACTGACATTCATATAGATGCAAGAAAAAAGG TCAATTTTATGGCTGGCTTTATTTATTTAGTTATGATCTGATATCCATATATGAACCTCTTCCACTTCTTCATTTTTGTT ATTCACTTAATTGTTTTTTCTTCTGCGACATTGTTCTTTGACCCAATATAATCCTGGAACACAACTATAAACTATTTCTC AGAAGTTTGTCAAGGCCTACAACAAAATGTAGGATTGCATTTTAATGTGAATGCAGAAAAACAAGTTGGTTATGCAACTT GCAGGAACTAAACAATGAAAGCAATATCAATGGAGCTCCATTCTTTTAAGTCTTCCGTATAAAGATCTTTCTTGGACTAG CTTCTAACAGATTTAGCTTCTGTAATGTATAGGTTCTTGTCACAATATTTAAACCTGTTTGACTTGGTATTTTTTAGTTT GATGTTGCTGGTCCTATTTTTCATAATTAAAATAATTTTCTATATTACATAAATTGAGTCTGTGACTTAAGGGCCCTAAC TTGTACAAGTGTGAGAGAAATTAAAATAAAATATAATAAAAAATTCTTGCATCTATAGTTGTCCTCTTATTGGTTGAATT ATTAGGATAGTTGGTCTTGGACATGGATATCCTATGTTGGATTGTTTTGGGGTTGGGGGTGAATTGCTGACAAAAAAAAA TTTTGGGATCATTCTTAGAAGATCAATGTGTATAAGTAATTAAGATGAAAGATTATTCAATATTTTTCAAGCTTATTATT CTATCTCGGAGTTTGGAGTTTGCTCCACTGGGTGACCAGGTCTAGTAGTCCGGGACATGCAAATAGTTGAAAAGTTTTCT AGTTGTGTATTAGCAATGAACATTGAACAAGACATTCATTACTGGAAATATATTGGGTATTAGTCTGACATCTATTCTTG AAGGCTTAATAGCTCTTTTGGTCCCTCTAGAAACAAATTAGCAAAATTAGTCCCTCACATTTGCACACTTAAGCTGTTTT AGTCCCAAATAGGGATCATTGTTGCAAAAAAATAAGCAATGTAGAGGACCAAAAGTGCTAATTTTTTTATTGGGGACCAA AAGTGCAAAATCGTGATAAGTAAGGAACCAAAAGAGCTATTAAGCCATTCTTGAAAGAAAACAAATTATGTCGCCAAAAC ATATTTATAGCATGTTTGGATCAGCTTTTTTTTCCAGAATTAATTTTGGCATCCAGAAGCTACTCACAGAAACTTCTCCC CATAATTGATTTTAACTTTAGAATCAATTGTAGTTAGTTTTTTAAACATGTTATTAGTGTTCTTTTCTTTTTGTTTATCA TTATTATTATGTTTTATGCTCAAGTTTGGGTATCAATTGCAGGAATGCGCAGCTGCTTTTGTGTTCTTTAAAAGTCGGTA TGCTGCTCTTATGGCTGCACAAAATCTTCAAACATCAAATCCTATGTTATGGGTCACAGACCAAGCTCCTGAACCACATG ATGTTTACTGGTCTAAACTGTGCATACCATATAGGCAACTTTGGATCCGTAAGATAGCCACACTTGTGGCTTCTATGACC TTCGTGCTTGTATTTCTCATCCCTGTCACATTTGCACAATGCTTGACTCAACTAGACAAGCTTGAGAAAATGTTCCCTTT TCTGACTGGGATACTTAAAAAGTAAGATTTTGCTCATATACTAGCGGAAAATATCATAGACCTAACCATATTGTTGGCCT TTTTTTGCAATAAATATGGATTAGAATTTTGAAAGAAATAATTATGCATGATAATGACTTCGGTTTCATACATGATAAAT CAACCATGGAATCACATTTTAATAAACCCTTTATAAGCAGAGTAACACATGTGCATGCACTATATTGAAAGTTTATTCAG AATTTTCTATTAGTTTGTTTACTTGCTCATACAATACTTGGCCTACCATAAATCCTGTGTAAATTTCAAGATTTCGTAAT ATATTATGATAAAACTAGAAAACAACAAATTACTTTGCTAAGCCTGTAATTGCAATTTGCCACCTACCATATATGATATT CAAGAATTTCTTTATACTTAGTATATCTTCAGCAATACTTTATAGAGGAAAACAAAAATGTATTTCTTGGTAATCATATT CCCAATTAGGAACAATAAACTCAACTGATTAACTATGTTGGAAGAATGGTAATTGAATAACCTGATTGGGCTAAGAATTC ATTCTTTGTAATTTTCTATAAAAAAATTCTGTCATTCTATTAAGCTTATAAGTTAGCCATCTGCTATTTGTTTCGAGGAA TAATGTCAGCATGTTAGAATTCTAGCTAAGCTACTCATTGTTTGTCCTTCTATTTCATCTAATTTCAGTTATTAATTCCA CACATATTTTTTTTTGTAAAATCATAAATTCATTAAGATGAAGGACAAAAGAATCCCAATGAGATGTAATGATAGGGAAT CCTCCTTAGCATCAGAACAAAACACAAAACAGCAAATGAAATTGGAAAATGGAAAAGAATATAACAAAGCTGCCCAATAC CTCAAAATATTTGCTAAGGAAATCTAATTAAAAATGTCAAGTGCTTCACCTCACATAGAACCCAAGTGTCTAATATTATC CCAAATCTAGTGCTTTGCTAAAGATATCTTATTTAAACACTGTCAGTTGCCCACAAGCAATGTTAAATGTTCATTTTTCT GCAACATTTTCTTGTTAAAATAGGGGGGTTGTTTAAAATTATTATCCATGCATGGGATGTGGAAGGTTATCAAGATAGTT TCAAATTTTAAAAATGCTATACAGTCCATTGTAAAGTGAAACAATATTTTTTTCCAGGAAATTTATGATTCAGCTGGTGA CTGGTTACTTGCCAAGTGTGATTTTGGTTTTGTTTTTATTAGCTGTTCCACCATTGATGATGCTATTTTCAGCGGTGGAG GGGCCTATTTCCCGTAGTGGAAGGAAAAGAAGTGCTTGCTGTAAAGTTTTGTTCTTCACAATTTGGAATGTGTTTTTCGT TAATGTTTTTGCCGGGTCTGTAATCAGCCAACTCTCAGTCTTTACTAATATAACAGAACTAACTGCCCAACTTGCCCAGG CAGTCCCGGTGCAGGTGAGATATCCAGATTCCTAGATGACAAATGTTGATTGTCAATTATGTACCCCTTGTGAGGATATA TACTTGTATCAAATATTTGAGCATTGTTGAACTAAACTTTTGTCCTCTTCAGTTTATAAATGTCAGATAAATTGGTTAAT CTTTGTGATTAGTTATTCACTGTACTGTGGTTTTTTTTTCTCATGGCATACAGGCTGCCTTCTTCACAACATATGTTCTA TCATCTGGTTGGGCAAGTTTGGCTTTTGAAATTATACAACCGTTTCCTCTTTTATGCAATTTGTTCCAGAGATTGGTCTT CTGTTCCCAGGAGGATTCATATAATGGCAACCTAACTTTTCCATACCATACAGAAGTTCCAAGGATCTTGCTGTTTGGAT TCCTTGGCTTCACCTGTTCTATTCTGGCACCCCTCATACTGCCCTTCTTATTGTTTTACTTTTCCCTTGCATACCTCGTT TACCGAAACCAGGTTAGTACTTCTATCATGTTTTTGTCTCCTTTTTCTCATGATGGAGTTAATTGCAC
CDS sequence (LotjaGi1g1v0364100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGCGGAAGTTTGGAACAGACTTGTAAGCCAAGCTTGGCGCAATGTTACTTTTGTGGAGGGACCACAAATTTTAA GCTAATTTCTCAAGACATAGATAGTATACATGCAAGAACAGGCTACACTGACATTCATATAGATGCAAGAAAAAAGGAAT GCGCAGCTGCTTTTGTGTTCTTTAAAAGTCGGTATGCTGCTCTTATGGCTGCACAAAATCTTCAAACATCAAATCCTATG TTATGGGTCACAGACCAAGCTCCTGAACCACATGATGTTTACTGGTCTAAACTGTGCATACCATATAGGCAACTTTGGAT CCGTAAGATAGCCACACTTGTGGCTTCTATGACCTTCGTGCTTGTATTTCTCATCCCTGTCACATTTGCACAATGCTTGA CTCAACTAGACAAGCTTGAGAAAATGTTCCCTTTTCTGACTGGGATACTTAAAAACGGTGGAGGGGCCTATTTCCCGTAG
Protein sequence (LotjaGi1g1v0364100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSGSLEQTCKPSLAQCYFCGGTTNFKLISQDIDSIHARTGYTDIHIDARKKECAAAFVFFKSRYAALMAAQNLQTSNPM LWVTDQAPEPHDVYWSKLCIPYRQLWIRKIATLVASMTFVLVFLIPVTFAQCLTQLDKLEKMFPFLTGILKNGGGAYFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 109 | 109 | - | – | |
PANTHER | 4 | 152 | 149 | 1.0E-72 | – | |
PANTHER | 4 | 152 | 149 | 1.0E-72 | – | |
Pfam | 8 | 96 | 89 | 7.7E-12 | ||
Phobius | 110 | 129 | 20 | - | – | |
TMHMM | 112 | 134 | 23 | - | – | |
Phobius | 130 | 159 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0364100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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