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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0385700 |
Transcript ID | LotjaGi1g1v0385700.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|A0A0L9UHF7|A0A0L9UHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0385700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86920950..86930342) extracted from Lotus japonicus Gifu genome v1.2.
GTGACACTTTAAAAATTCCTTTTACCCTTTATCCAAATATAGTTTTTGATGATATCACACTGTCATGGGTTGAAGGAACC CAAAAAGAACAACCCCTTACCCTACCTGGCGCACTGGTTAGACTCTGGCTAACTAGTTACTTCCATCTGTGAGATTTTCG AGGCCTTCATTGGCAGTATATAAACCACCCCAACCTCTTCACCACAATCGCAACACACTAAACTAGTTCTACTTAACTGT GTATACCATCAATTTTCAGCCCCCAAACTCAAGAGGTGAATATACATCATTCTTTCCCTTAATCTATTGATTCATTCTTT CTCATTGACTTCCCATGCACACATTTTTTTATCTCATATATCAAATAATAACATGTGTTTTGAAATTCTTTTACAACCAA TTCTAAAGTTAGAATGAATTCCGGAGACAAATCTTATGGGATTAGCTTATGCTTACATTGTGGAAAAAAAATGCTGATCC AAATGTGTTATAGATGCATATCTGATTATGTAAACAAGTTTCTCTGAGTAGCTTCTGCTGTTAGTTACGAGGAAAACAAG CTTCTACCTAGTTTATGCGATTATAGGCTATACATGAGTTGAGTTTAATGTAAATTTTCAAACATGCAGTAAATTTTCCA TGTACTAATATATATCATCATTATTGCATAGAAAATAAAATGTAGTACTACTAATCAATCCTACTATACATTTTGGAACC TGTGAAGGGAAAATGAGCCGACCAGGAGATTGGAACTGCAGGACATGCAGCCACCTCAACTTCCAAAGAAGAGAATCGTG CCAACGATGTGGGGAGCCAAGAGCTGGAGCAGGAGGTGACTACGGTGGCGCCTTTGGCAGTGGAGGAGGTGACTACAGTG GCGGCTTTGGCGGTGGCAGAGGCGGCTCCTCCTCTTTTGGCTTCACCACTGGCCCTGATGTCCGCCCTGGTGACTGGTAC TGCAATGTGGGAAACTGTGGAGCTCACAACTTTGCTAGCCGCTCTGGCTGCTTCAAGTGCGGTGCACCCAAGGAGGACTC CTCTTCTGGTGGATATGACATGATGAGATCCTACGGTGGTGGTGGTGGCAGCTTTGGCGGCACCTCCGCTCGCCCCGGCT GGAAATCCGGTGATTGGATATGCTCCAGGTAAGTTCTTCACCATTTATGACTTTGAGATATTTAAAATTATGACAAGTTA ATTGGTTCGCTCCACTCTCAATTTCCATCTTGCAGAGAAACTCTTTTAACTTATGAATCAGATTTTTCTTGGTTCACAGC AGAGAAAGTCTTGTTTTAAGTGATTGTTGGTAAATAAAACAGTAATGGGGAAGGGGGTGTCTGACTAAAATGTGCAGGTC TGGGTGCAACGAGCATAACTTTGCTAATAGAATGGAGTGCTACCGATGCAGTGCACCAAGAGACTCTAATGGCGGCAGGT CTCCATATTGACGTAGTATGTTTGCATTAGTTTCTCTTTCACCAAAGTCAATTTTAAATTTCAGAATAAGTTGTAGAAAA ATTTCCAAACATATACGTCTTTTTTCATTCTCAGGTTTGCGCGCGGTCTAAGCAGAGAATTGAGAGGCTATCACTATACT CTTCCTAGAGACAGTTACCCGTTTTTGGTCTACCGATATGCTACTTTCTTCATCATCTCATGCGGAGGATATTTAATTTT GCTTATTTAATTTCCTTGTTTTTTCCAGTTAGGAAGCTTTAGGTGAATTATGATTTTGAGTTTGTTGGCACTGAGTGAGT GTTTCTGGCTCTTGATAGCTCAGCAGCTAGCTACGTACCCCATGTAGTAACTTTTTTCAAGTATCAACATTAATTTAATG ATCAGTAGTACTGTTAAGTATGTGTTTTGAGCCTCATCACTATATATGATTTCGTGCAAAGGTGTTCTTTATCTAGTACT CCCCGCGAGATATGTTCAGAAAAAGATTCTGCATTCACTGTCTTTCTCTCTTTCACTCTCAAAGCTACACATATACATAT AACTTTATAGAATTACAGTGGAGACGTGGTCCAAGGAATATATAAGAGCGTCTCCAATGGTAGGAACTTATTTTGGGACT TTACTCATTTTTTGTGGGCCCAGATTGCCACATAGAATTTAAGACACTCATAAGGTCTCTATGCACATTTCACTCTAGTG GTTGAGATCTTATTTTACTTTTGGCCGGGCCCACAATACCCAATATATTTATATTATTTATTTCCCTCCTTATTTTTCAC TTTGATTATTGTATTGGAGGAGAGAGAAAAAAATATTATTTTATTTAAGATTCCACATTTGAGAGTACCTGAGCTAAAGC ACGGATCTTAGCTTTTGCTAAGATCTCATGCCATGTATGATAGCTCCAATGGTGGGATCTAATAAGATCCGGATCTTATT TTAAGATCTCAAAATAAGGACTTCATTGGAGATGCTCTAATGATTCATGACACAGTGGTAACTGGCAAATAGTCAGTATA GCCCCTATTATCCGCAAAGCATTTCTTTAATATAAGGACCACTTAATTCGGGGTAAATTATCATAACAAAGTTCACAAAT TAAAGCAGTTTAGAGACCTTATTAACAAATGAAACAGACACACTGAGAGAGAATCAGTATGTATATGATCAGCAAAGGGT ATTATGAACTGTATATATATGTACAAATATATATATTGTTCTATACTATCTGCTTCTACAACCATAAGTGTTACAGAATT GCCAACTATACCTAACTAGCCAAGTTCTGTATGTATGTCATGTCACCTAAGAACCCCCACCCCTGCATGCTGAGAAAATT GGATGTTAGACATTCCCAGCTTGGAGTAAATTGCTTGAAAAGTGGCAGGAGAAAGTATTTTCTTCGTGTGTGTATATATA TATATTAGATAATTAGAAGACTAGTGTTTAGATTTTCACCAATAATATGACAATCTATCTCAATATGCTTTGTCTGCTCA TGAAAGAGTATATTGGCTGCAATGTGAAGAGCCAAGTAGTGTCAAGTTTATCACAGCCTGAAATGGAATCAAAGATTATT CAAAATCCTCCATATGGAATGACATTTGAACTTACGGCTGGTCTAGGGACATCTCTGATGGTGTATTCAAACCCTGTGAT GTCACCGGTTTCACCTAGAAATCAAGTTTTGCCTCAGGGTCAGGAGAAATTCGAAATGATCAGAAACATACTCAATTTAG CACATTGGTTACAATCCTGTCTTTAATCCAAGTATTTCGGGAGAGTACTCAGTCCCTTCGATTCTCTTACTAATATTGCC TTACAATTGATGAAGCAGCAAAAGGATGAGAGTAACCATGGCATATATTGAACATGCATGTTAACACAACAAATGTTAAT TGTTTTTAATCATCTTATTCAAAATACAAATACAAGTTATTGATCTAATTGCCTAACAGATCCATCAGAAATAACTTCAA AGTTTCTTTTGCCCTGTGAAAAAGGATTCAATTTTAAGACACTTAGAGAAAGGCATATAGGAACTTTGATTGGAGGAACC AGAAATGCTTATCTGTATTGTTAACTATAAACAATATCAAATGGAGAAGGTTCAATCACTTTGCTTAATCAAAGTCAGGC TTATCAATAATTTTTTAAGTATTAATTGACATAGGATTCCAAAACTTTACGAGCTTATGATACATTTCATGGGTTTCCTC AATCCTCATTGACCTCCTGGTTACGTTTAACAGCAACATTCATTGGCAAAAAAGTAGCCTCAGTTTAATTAGTGTCTGCT ACTACACTCCATTATATAGCTTTTAACAAGATTCTTTAAATTCACTTTAGTCTAAGCTTTATGTTACTTCATATGCTTTG TTCAATCATGTGCTTTAGTGAAGTACCTCCTCCTTGCTCAATCATGTGCTTTGGAGTTCTAACTAGCAATTGATGAGGTT TGAGCCATTTTCAGTACATTGTATATTCCCCATCATTATTTGGTGTGGGACTGCATGCACTCATAACTTCTACACCTTAA AATGGATTAGTCTCTGGCTATCTGTTGATGAATACTATTGGTTCTCACAAAAAATTCATTCAATGTAGTTTATAAAGGAG AAGATTTAATTGAGCATTTTTATAATTTATTTTTATTTCAAAGCCTGCAATATTTAAGGGTTTTATTTCTTATTATTTAA GTGGTGTGCATGCAAATGCTCTTTATAGTTAGTTGCTTTTTGTGTGTGATGAGTGTGTGTGTGAGCTTGTTGGTAATTCA TGTCAATAAATCTAAAAATGAAAAAGATACATGTACAACCAAATAGTAGTTGTATACCATTTTGACATCCACTTTTGTGG CGGTTTTTTTCAGTAACAAAGAGGAAAAGTTACATTCATTTTTATTTATTACTTTGTGACAGTAAAAAAACGATTAACGT GAGAGTGATATGTCATTATTTAATTGTATATGTATTGGGGCTGATCTAAAAAATCCAAGGCCTACAAAGACCCTTGCTCA TGAGAGCATAACAAAAACATCTTTAATCATGAGGATTTGTAATGTCAGTTGGGTCCCAGAGATACCATCAAAACTAAACC AGCTAGGGTTGAAACCATTAATACACTGTGGTAGTCAAGGTTAGCAAAGAGCCAAAGACAAGAGGACTTTCTATCCAATT CAATGCACGAAAAAATTGAGATATATGTTTCTCTTTTCAAAAGCTTTATGTTTCTCTTTTCCTTTCTTTTTAACCCAAGC AACATGTTTAAAGGTTTCCTTTTCCCTCCTTCGAAATAAATGGTTTTAGCTTTAGTTTACAGGTAAAACACACTATCTCG CCCAAAGTTGCACACAATCTTTTTATCGGCAAAGAGAAAGAAAATTTACTTGCCCATATCTTGAAATGTATGTAGGAGAT GAAGTGGGAAAGTAGGGTTTAAAGTAGATGTTGATAAGATAACGATAGTGAGAGTTGAGAGCTCTTCACTATTTTATGGA AAGGCTTTTTCAGACATTAGTCTTAATTTCAATTAATTTTATAATTATAACTTTATGTAACTCATAATGTTTTCACATAA AATATAATAATAAAAGTGGTTAGTAAATATAATTAAACATAGTGGGCACTTTAGATGACAAGGTCAAATGATTTTAATAA AGTTAAAAAATAAATATTAAAGTTTAAAAGCATATACCAAAAAAAAAATCAGCTGAGATGATCAGGTTGATTCAGATTAA AAAATGAAAAACTTGTGTGCAATTTGTTTAATTCAAGTTAAAAATGAAATGAATCAATTGGTTAAATCAACTTGAACCAA TTCTATTGATTTGATTTGGATTATTGAGTTTTTCTAATCAATTTGATTAGAAAAACATCTCTATTTCGAGCTAGACAATA AGTCAGCATAAAATATTCTCTCTTTTTCTTTTTTTTTGATACAAACATGAATTTTATTTTTGTCATCATCAACATATAAT TTTCTGTGAAATCTTATTTTGGTCGAAGGTTTAAAGGCCCAATGATCACTACAAAAGGGCTACTATACAGCCCAAAAAGA AGTGGTAACACGCTAAGCCTGCCTAAATATACACTTGACAAAAAAAGCCTAAAGATCCTTAACGTGACTTGAGGGAGTAC GTTATGCTCAAAAAAAGAAAAAAAAGGAGTACTTAACGTGTTTAATGATTGTTGTTATCATATAACAACATGAATTGCTT CTCATACTAGACTTTGAGATGGAAATGATGGAAGAATCTTGCGAACCTGATATTTGCTATGACTTATGAACTATCTTTAA AATTTGCTTATATTATGCTCTGAATCATGTGTAGACTATCTTTGTAACGGTTATTATGACTACTATTTCAGTCTCAGATC ATGTGTTTCTTCTAATTTTATCAAAATGTAACATGTTTAACCATATGCTATGATTAGGATTTTGGGTAGTCATGTCTTTA TTAAATGCTTACATATATCTCTTCAAATACATTTTGATTTTTTCCTGAATAATTCCAAGTTGTAGATCATGTTAGTGGCT AACTGAAAAAAGATGTTTTTACTCTCTAAACAAGGAGAGTAAATACAAACATGTCCTTACTATATGATCTTATCTGTTTA TGAAGCTATCTTTAATCTTATCATCTTGTTTAGTTGGGTCCTCTATTAGACTAACCTCGGGTCAAGAGCTTAAGAAAACT TCTATATCTTTCAACAGATAGTACTCTATTTCTCTATCTCTCTTTTTTCTTTTACATGTGTGCCCATCTACATAACACAA TAAAACTATTTATAATTTATAATTAAGACTAAAAAAACACTTCATCAGTTTCTTATTCTAATATAACAGGATTGAATGAT CTTTTTATCTTTTCATTAGTGGCATGAAATGATAATATCTGTTATTTTTTAAAAAAGTTTGCTAAGCAGTCATTTCTTTC AACAGATTAACAAGCTCAAACATCAACAAACACATTTGAAAAATTAAATGGTAATAACTCTGGAAAAAACTGAACTATAT GTTCAAAATGAAATTGGGAGAAACGCTTACAATCTGAACTAGTCAACATGTGAATCACTCATTTGAGCTTAGACTTGGAT GAGCTCTTAAGAGGTTTAGCAGTGGACCGGATTGGGGCTGGTCTCACAGCCTTCTTCACATCGTATTTTACAGATGAGAA GGCACATATTAAGGCGAGCACCATTGTCGGGTAGACATAGACAGCTTTTGAAGGATCAGTATTTGCAGGCTTTCCTAGAA TGCCTTCTTTGACCAGTCCCCAAATTATCAGAAGTGACCCGAACATGCTCATTCTCCCGGGTTTTAGAATACCAACAAGT GCTCCTGCCACTGCGAAGTAGCTTCCCGCAAGAACCTGGTTAAAAATTGTTGTGTATTTAGATGAGAAGTATCAACAGAA ACTGTATCATGTGCTACAATGACATTAATTGAGCAGAATAGGCAAGAATAATTATGTAGCACAAAATATATGTGACTTAA AGGAATTAATGTCTCTTTTAATTTGTCAGAAGAGTATTCTCATTAGTCCGTGGCTTTTTTTCCTTCCTCATGAGAAATCT CCAGTATTCAATTGTCTAGTTGTTAAACTTGGCATAGACACCGACCATTTCAAGTAAATATTCCACACAAAATCCTTGAC ACGACTAAGGCTCGAATTAGAAAAGATCTGTGCAATGGAACTGAAAGGCTTAACTCAGATAAGAGCAGATAACTCCAAAA AATGAGAAAAAAACCTCTTAGCACAGGAAAAGAAGCGGATCTCAAGTCTCAACTTTAAGCCAATATAAAAGTGTGTTTGC ATAACCACATACTCGCGTGTCAATCTTGAAGATACACAACATAGCTTTTCCTAGTGTTTGGTTTAGCTTTTACAAACCAA ATTAGGTTCCAAAATCAAATCTATCGTAGCTCTGGGATAGAAGTGTGAATTTGGCTCATCTAAAGTGAGAGACTCACATT ATAGGGTAAAATAAGTCATCACAACCATTGATTGGGAAGTGCATTCTCTTTTGTGCCACCACTCAAACAAACACACACTC AATAAACCGTCTTAAAGTTTTCCTTATCAGAGAATCCAAACACACTATAGTGAACCATTGGTTTATCAATTTGCACAAAA TCCATAATGCATTTACTCATAGAGTGATGCTATTTGTTACGGGACAAAATTCAACGAATGATAAGAATGAGAGTTTGTTT TCAAAACATATTTCTATTTGACAGAAAACACATTCAATTGCCTATAATTAAGGAACTACTAACCAATCATTTTACTTTGA AAACTATTCGCAACTTACGTTTTCGTACCAAGAGGCATTATTGTTACTCATAAGCTAACAGGTCATTCGGAATCACGTAA AAACGGTCATTTACTATGCATAATCTAACAATTACTATAGCTTAAGATGAAATGTGCATCGGAGTGTGTGAAACTGATTA CTGCATGTTTAGATGAGCTTCTTTTAAGTAGCTTTTCCCCGAAACTGATTTTGGCTTCAAAATCAATTGTAGAAAAATTT CCAATCATGCACACTGGTAGCTTTTATATAGAATTAATTCTAAACCATTTCACTGTGAAACTGAAACCAAACATGCTAAT ATAAGAGACATCAATGGTGAAAAAACAGAAGGTGCATGATTCAGATCAAATTATCAAACCTCCAATCGTTGAAGATCAGT GACTGCAGAAGCATTCTTGACAGCGGTCAAGTTATACGACTCCAACAAATTTCCCCAACTTGGAACACTCATATTGTGGA TGAGGCCATGCACAACAGCACCAGGGTACAGAAGGCCCTTGACAACAGGAACAGGGAAGATCTCACTCGCAATCAACTGT GACGATGTTACATGTAAAGGATTTGTACACACACCAGATCTGCAAGTCACCCTGTACAAGCAAACCAAACCAAACCACAA TTTCAAACCTAAATTCCACATCTAACACCAATCTGAAGTAGAAGAAAACGAAAATTGATAGAACGAGTTTACAATCGATG AGAGTACCTGAAAAGAGGGATCTGGAAGAGGATGAGGAGGAAGTAGATGCGAGCTGCAATTGATGAAACATTCTTCGTCC AACTCTTCGATGATGAAGAAGAAGGTGATACCGTGGTCTTGGAAACCGTGGTCTTGGAGGTCGTCGCCATGGAGAGGGAG GGAAGATCCGATGCTTCTCGACGATCCTGCTGTTGCTACCTCTTCCCAGTAACCATTTCACAACTGTATATTTTTGTTTG TATTCTTTTTCAATCTATTTTTTATTACTTTAATGCAGAAATAAAAATACCATACTTAACTAAAGGGTTAATCATCATTT TAGTCCGTATAAATGTAAGCGGCTCAATATTCGTCCTTAATTGAAACTTGTTTTTGCCTTCTGTAGGAAAATGCTAGGAC TATTCTTCACGGAAGACTTGTCTCATGTGGCATTGTTTAGGGGCAAGTTAGAGAGCTGACATGATACGCTTATGTGTTGA ATGAATCTTATGTTATTTTTTGTTTTAGTGTTTTAACATTTCTACGTTAGTAATGAACTGATTCACTAACATGATCCTTG AATCAACTAACATACTTCACTTGTATCACTTGGTATACAGCCTGTAAAGCGAGAGTATTGGCCAAATCTGAGGTTGAGGG TGCTGCTTGATGTAGATCTATGCTCTTTCTCAGTGAATCTTCAACTAAAAGCAGGATCCAACAACTTGAATCTTCAAGAA CAAGGTGAAATTTGTGGAAGACAAGCAGATGAAGGTGTAGGAAGGCGTCACAAACACTCATGGGAAAGAGTTTTGATAAG TCAAAAGTGAAGAGCCGCCACTAAGATGGGTGCATCTTTGATAATTCTCAAGAGAATTTTCTAAGAGAATTTGTAGGAGA TTCTAAGCTCAACAACTCACAACTTGAATTATG
CDS sequence (LotjaGi1g1v0385700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCGACCAGGAGATTGGAACTGCAGGACATGCAGCCACCTCAACTTCCAAAGAAGAGAATCGTGCCAACGATGTGG GGAGCCAAGAGCTGGAGCAGGAGGTGACTACGGTGGCGCCTTTGGCAGTGGAGGAGGTGACTACAGTGGCGGCTTTGGCG GTGGCAGAGGCGGCTCCTCCTCTTTTGGCTTCACCACTGGCCCTGATGTCCGCCCTGGTGACTGGTACTGCAATGTGGGA AACTGTGGAGCTCACAACTTTGCTAGCCGCTCTGGCTGCTTCAAGTGCGGTGCACCCAAGGAGGACTCCTCTTCTGGTGG ATATGACATGATGAGATCCTACGGTGGTGGTGGTGGCAGCTTTGGCGGCACCTCCGCTCGCCCCGGCTGGAAATCCGGTG ATTGGATATGCTCCAGGTCTGGGTGCAACGAGCATAACTTTGCTAATAGAATGGAGTGCTACCGATGCAGTGCACCAAGA GACTCTAATGGCGGCAGGTCTCCATATTGA
Protein sequence (LotjaGi1g1v0385700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPGDWNCRTCSHLNFQRRESCQRCGEPRAGAGGDYGGAFGSGGGDYSGGFGGGRGGSSSFGFTTGPDVRPGDWYCNVG NCGAHNFASRSGCFKCGAPKEDSSSGGYDMMRSYGGGGGSFGGTSARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPR DSNGGRSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 33 | 33 | 3.2E-11 | – | |
PANTHER | 2 | 163 | 162 | 4.7E-68 | – | |
SUPERFAMILY | 2 | 32 | 31 | 5.97E-9 | ||
PANTHER | 2 | 163 | 162 | 4.7E-68 | – | |
ProSiteProfiles | 3 | 32 | 30 | 9.936 | ||
Pfam | 3 | 29 | 27 | 2.6E-4 | ||
SMART | 5 | 29 | 25 | 2.8E-6 | ||
ProSitePatterns | 7 | 26 | 20 | - | ||
Gene3D | 64 | 104 | 41 | 1.8E-13 | – | |
SUPERFAMILY | 67 | 103 | 37 | 2.35E-11 | ||
Pfam | 71 | 102 | 32 | 3.3E-7 | ||
ProSiteProfiles | 71 | 102 | 32 | 10.342 | ||
SMART | 73 | 99 | 27 | 3.8E-7 | ||
ProSitePatterns | 75 | 96 | 22 | - | ||
Gene3D | 120 | 164 | 45 | 6.7E-12 | – | |
SUPERFAMILY | 126 | 163 | 38 | 1.57E-11 | ||
ProSiteProfiles | 131 | 162 | 32 | 10.365 | ||
Pfam | 131 | 160 | 30 | 7.4E-9 | ||
SMART | 133 | 159 | 27 | 2.9E-4 | ||
ProSitePatterns | 135 | 156 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0385700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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