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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036443
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We have found 39 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.380s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0385700.1
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|A0A0L9UHF7|A0A0L9UHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0385700 LjG1.1_chr1 86920950 86930342 -
2 domain predictions
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LotjaGi1g1v0385700.2
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|A0A0L9UHF7|A0A0L9UHF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0385700 LjG1.1_chr1 86928887 86929610 -
2 domain predictions
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LotjaGi1g1v0649800.1
n.a. Zinc finger protein VAR3, chloroplastic; TAIR: AT5G17790.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|A0A0B2SAH8|A0A0B2SAH8_GLYSO Zinc finger protein VAR3, chloroplastic; Found in the gene: LotjaGi1g1v0649800 LjG1.1_chr1 120840634 120846522 +
2 domain predictions
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LotjaGi1g1v0772600.1
n.a. Zinc finger protein VAR3, chloroplastic; TAIR: AT1G55040.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|I1NBZ0|I1NBZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772600 LjG1.1_chr1 134532986 134537613 -
2 domain predictions
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LotjaGi2g1v0070000.1
n.a. Zinc finger protein VAR3, chloroplastic; TAIR: AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|A0A072VGP2|A0A072VGP2_MEDTR Zinc finger (Ran-binding) family protein; Found in the gene: LotjaGi2g1v0070000 LjG1.1_chr2 17027986 17033117 -
2 domain predictions
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LotjaGi2g1v0197500.1
n.a. Zinc finger protein; TAIR: AT1G48570.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|V7C5Y9|V7C5Y9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0197500 LjG1.1_chr2 63251648 63256570 +
2 domain predictions
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LotjaGi2g1v0218700.1
n.a. TATA-binding protein-associated factor 2N; TAIR: AT4G28990.1 RNA-binding protein-like protein; Swiss-Prot: sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|V7C3Z4|V7C3Z4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0218700 LjG1.1_chr2 67361453 67365984 -
2 domain predictions
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LotjaGi3g1v0066200.1
n.a. RanBP2-type zinc finger protein family; TAIR: AT1G67325.2 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325; TrEMBL-Plants: tr|A0A151SR86|A0A151SR86_CAJCA RanBP2-type zinc finger protein family; Found in the gene: LotjaGi3g1v0066200 LjG1.1_chr3 7025428 7030686 -
2 domain predictions
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LotjaGi3g1v0293800.1
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9UNK9|A0A0L9UNK9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0293800 LjG1.1_chr3 60054804 60064527 +
2 domain predictions
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LotjaGi3g1v0293800.3
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9UNK9|A0A0L9UNK9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0293800 LjG1.1_chr3 60055142 60063812 +
2 domain predictions
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LotjaGi3g1v0293800.4
n.a. RING/U-box superfamily protein; TAIR: AT1G65430.1 IBR domain-containing protein; Swiss-Prot: sp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8; TrEMBL-Plants: tr|A0A0B2RE25|A0A0B2RE25_GLYSO Putative E3 ubiquitin-protein ligase ARI7; Found in the gene: LotjaGi3g1v0293800 LjG1.1_chr3 60056516 60063812 +
2 domain predictions
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LotjaGi3g1v0358900.1
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0358900 LjG1.1_chr3 74108564 74114655 -
2 domain predictions
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LotjaGi3g1v0497500.1
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 LjG1.1_chr3 91624537 91633292 +
2 domain predictions
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LotjaGi3g1v0497500.2
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 LjG1.1_chr3 91624817 91632430 +
2 domain predictions
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LotjaGi3g1v0497500.3
n.a. RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 LjG1.1_chr3 91624993 91631891 +
2 domain predictions
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LotjaGi3g1v0525600.1
n.a. RNA binding protein, putative; TAIR: AT1G50300.1 TBP-associated factor 15; Swiss-Prot: sp|Q9AST1|TAF15_ARATH Transcription initiation factor TFIID subunit 15; TrEMBL-Plants: tr|A0A072UXF8|A0A072UXF8_MEDTR RNA recognition motif (RRM) superfamily protein; Found in the gene: LotjaGi3g1v0525600 LjG1.1_chr3 94235067 94240070 +
2 domain predictions
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LotjaGi3g1v0525600.2
n.a. RNA binding protein, putative; TAIR: AT1G50300.1 TBP-associated factor 15; Swiss-Prot: sp|Q9AST1|TAF15_ARATH Transcription initiation factor TFIID subunit 15; TrEMBL-Plants: tr|A0A072UXF8|A0A072UXF8_MEDTR RNA recognition motif (RRM) superfamily protein; Found in the gene: LotjaGi3g1v0525600 LjG1.1_chr3 94235671 94239361 +
2 domain predictions
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LotjaGi4g1v0013400.1
n.a. Tyrosyl-DNA phosphodiesterase 2; TAIR: AT1G11800.1 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|A5D8M0|TYDP2_XENLA Tyrosyl-DNA phosphodiesterase 2; TrEMBL-Plants: tr|I3S456|I3S456_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0013400 LjG1.1_chr4 1701434 1704188 -
2 domain predictions
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LotjaGi4g1v0127400.1
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT2G17975.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325; TrEMBL-Plants: tr|I3SE82|I3SE82_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0127400 LjG1.1_chr4 18580157 18584679 +
2 domain predictions
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LotjaGi4g1v0147400.1
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23934405 23943673 -
2 domain predictions
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LotjaGi4g1v0147400.2
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U3A2|A0A072U3A2_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23934835 23943671 -
2 domain predictions
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LotjaGi4g1v0147400.3
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23935085 23942746 -
2 domain predictions
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LotjaGi4g1v0147400.4
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23935321 23942652 -
2 domain predictions
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LotjaGi4g1v0147400.5
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072TS81|A0A072TS81_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23935321 23942733 -
2 domain predictions
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LotjaGi4g1v0268400.1
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|I3T8Y2|I3T8Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0268400 LjG1.1_chr4 63407370 63410577 +
2 domain predictions
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LotjaGi4g1v0268400.2
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|I3T8Y2|I3T8Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0268400 LjG1.1_chr4 63408337 63409775 +
2 domain predictions
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LotjaGi4g1v0268400.3
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|I3T8Y2|I3T8Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0268400 LjG1.1_chr4 63408337 63409775 +
2 domain predictions
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LotjaGi4g1v0382500.1
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.3 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL0|K7KQL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127403 +
2 domain predictions
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LotjaGi4g1v0382500.2
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127496 +
2 domain predictions
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LotjaGi4g1v0382500.4
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.3 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL0|K7KQL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120009 76127496 +
2 domain predictions
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LotjaGi4g1v0382500.5
n.a. Elongation factor 1-alpha, putative; TAIR: AT5G10630.1 Translation elongation factor EF1A/initiation factor IF2gamma family protein; Swiss-Prot: sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein; TrEMBL-Plants: tr|K7KQL1|K7KQL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382500 LjG1.1_chr4 76120049 76127246 +
2 domain predictions
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LotjaGi6g1v0054500.1
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054500 LjG1.1_chr6 9780780 9787555 -
2 domain predictions
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LotjaGi6g1v0054500.2
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054500 LjG1.1_chr6 9781381 9787550 -
2 domain predictions
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LotjaGi6g1v0054500.3
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054500 LjG1.1_chr6 9781529 9787771 -
2 domain predictions
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LotjaGi6g1v0054500.4
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054500 LjG1.1_chr6 9781570 9787436 -
2 domain predictions
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LotjaGi6g1v0054500.5
n.a. Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0054500 LjG1.1_chr6 9781572 9787477 -
2 domain predictions
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LotjaGi6g1v0098100.1
n.a. RanBP2-type zinc finger protein; TAIR: AT1G67325.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325; TrEMBL-Plants: tr|A0A0B2SHD2|A0A0B2SHD2_GLYSO RanBP2-type zinc finger protein; Found in the gene: LotjaGi6g1v0098100 LjG1.1_chr6 21240705 21252208 -
2 domain predictions
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LotjaGi6g1v0144400.1
n.a. Zinc ion-binding protein; TAIR: AT1G55915.1 zinc ion binding protein; Swiss-Prot: sp|P38838|WSS1_YEAST DNA-dependent metalloprotease WSS1; TrEMBL-Plants: tr|A0A072V797|A0A072V797_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0144400 LjG1.1_chr6 41546265 41549006 +
2 domain predictions
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LotjaGi6g1v0144500_LC.1
n.a. Zinc finger protein; TAIR: AT1G55915.1 zinc ion binding protein; Swiss-Prot: sp|P38838|WSS1_YEAST DNA-dependent metalloprotease WSS1; TrEMBL-Plants: tr|A0A072UX78|A0A072UX78_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0144500_LC LjG1.1_chr6 41558853 41561789 +
2 domain predictions
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