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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0393600 |
| Transcript ID | LotjaGi1g1v0393600.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma membrane ATPase; TAIR: AT2G18960.1 H -ATPase 1; Swiss-Prot: sp|Q03194|PMA4_NICPL Plasma membrane ATPase 4; TrEMBL-Plants: tr|A0A067FMD8|A0A067FMD8_CITSI Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0393600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87817614..87818014) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACCCAATACAACATCGCAAGTACAGAGATGGGATTGACAATCTGCTGGTTCTATTGATTGGAGGAATTCCGATTGC CATGCCTACTGTTTTGTCTGTTACCATGGCTATTGGCTCTCACAGGCTTTCCCAGCAAGGTGCAATAACAAAAAGAATGA CAGCTATTGAGGAAATGGCAGGGATGGATGTCCTCTGCAGTGACAAAACTGGGACTCTGACCCTGAATAAGCTGAGTGTT GATAGAAACTTGATTGAGGTTTTTACCAAGGGTATTGAGAAGGAGCATGTTATCCTTCTTGCAGCAAGAGCTTCTAGGAC TGAGAATCAGGATGCCATAGATGCTGCAATTGTGGGGATGCTTGCTGATCCAAAGGAGGTAAATTAAATATGCCAAAATG A
CDS sequence (LotjaGi1g1v0393600.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCCAATACAACATCGCAAGTACAGAGATGGGATTGACAATCTGCTGGTTCTATTGATTGGAGGAATTCCGATTGC CATGCCTACTGTTTTGTCTGTTACCATGGCTATTGGCTCTCACAGGCTTTCCCAGCAAGGTGCAATAACAAAAAGAATGA CAGCTATTGAGGAAATGGCAGGGATGGATGTCCTCTGCAGTGACAAAACTGGGACTCTGACCCTGAATAAGCTGAGTGTT GATAGAAACTTGATTGAGGTTTTTACCAAGGGTATTGAGAAGGAGCATGTTATCCTTCTTGCAGCAAGAGCTTCTAGGAC TGAGAATCAGGATGCCATAGATGCTGCAATTGTGGGGATGCTTGCTGATCCAAAGGAGGTAAATTAA
Protein sequence (LotjaGi1g1v0393600.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV DRNLIEVFTKGIEKEHVILLAARASRTENQDAIDAAIVGMLADPKEVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 93 | 93 | 1.2E-36 | – | |
| PANTHER | 1 | 127 | 127 | 7.8E-86 | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 127 | 127 | 7.8E-86 | – | |
| SUPERFAMILY | 4 | 61 | 58 | 1.44E-13 | ||
| TMHMM | 16 | 38 | 23 | - | – | |
| Phobius | 16 | 38 | 23 | - | – | |
| Phobius | 39 | 128 | 90 | - | – | |
| SUPERFAMILY | 54 | 78 | 25 | 3.57E-5 | ||
| ProSitePatterns | 68 | 74 | 7 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0393600.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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