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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0396600 |
| Transcript ID | LotjaGi1g1v0396600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thioredoxin; TAIR: AT4G31240.1 protein kinase C-like zinc finger protein; Swiss-Prot: sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3; TrEMBL-Plants: tr|A0A0B2Q9C3|A0A0B2Q9C3_GLYSO Putative nucleoredoxin 3; Found in the gene: LotjaGi1g1v0396600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88264546..88268224) extracted from Lotus japonicus Gifu genome v1.2.
AATTCCAATAATGAAAATTAAGACTAGAAAGAAATAAGGGGATTTTAAGTCTTATTATAACCACAATCTCGTATATTTTG ACAAAAATGGTATTTTGGGTATTTTGTCAAAATTTAGCATTAAAAAATTATAAATCAGATTAGATTAGATAACATGATAT GATATCTTTTGGCCACGTCGAAAGACCTTTCATTGCCCCACCGTCCTACATCATCTCCTTCCTTCCTTCCGTCTTGGAGA CTCAACCTCTTTCTTCTCCATCATTCTCTGTGCTGCTGCTAATCTTCTTCTTCTCCAACTGCAACTTCAAGGTAATTTCA CTTCAAAAATTCATACTCTATAAGAAAAACACTCACCTGCTTATTTGCATGCAGCACAACATACACTCACCACTTGTTGG ATTGTTTTTGCTGCTGTTTGAAAAAATTTCCCCTTAAATTATCATGCTTTGGTCCTTGATGTTTATGCTGTTATTGAATT CTTGACTCTTTACTGGGTTTGATGAAGTTCTATGCAAAAAAATCAAGTTTTTCTATTAGGACCTGTAGATATGGCACATG GGTACTTTTGATGATCATCTTCTTCTTCCCTCTCCTTTTTTGGCAAAAATGGAATTTTTTTTTCTGAAGCATGTCTTGTA GGTCCATTGAAATTCCACTTGAATGGAAATATTGCCAACTTATTTTTTTTTTATAATGATGATAGATAAGTAAGAACTAA GAAGAGATGTGTGTCCTGATAACATGTTTTGATTAACTTATTTTTTCTCAGAATCAATTCGGGGACGGGGAGTTTCTCAT ACAAAAGCTACTAGTGGCACACACTTCCACACACATCACTTCTTATCCATCATCATCTATCTAATTGCTGTTGGTCCCAC ATAATTAAACTTTCATGCTCCTATGTACTCTAATTCTGGCGCCTTACTAAGTCAGATGTTGAGATTTTTGACTTTTTCCC ATTTATCAAGCCTTATCCTATTGAATTATAGTTTTTAAATCATTTTTTCATTAAAACCTTTGCATGATGTGAGAAATGCA TCCAACTTGAGTTATGTGGTTTAGAGAATGAGATGCTGTTCCATCAGGAAGGCGTCTACGCTACCCTTTTGGCTGGTTTT GAATTCTGAAGCATCCTCTAGTGGAATATCCCCCATATTCGTTATCATAAGTGTTCATAATCACAAGTTGTTGTATTCTT CATTGAAGCTTACACACTTCCTTCCAAGTTTCCATTCTATCAATTTATGACCTCCAAGTTTGATTCATAAATTCATATAG CTAGAAGATTTTTCCACTCTGCAACCTTCCAAACTTAATTTGCAGGACTCCTTTGTACAACTGGTGAATTTTAAGATAAA GCTTAAGATTCTTTTGCACAGAATCTGAATTGCTTTTGTCTCCAGGTCTATCTGCCTTTGCAGAAATATAAACAAGTGTA GAAGTTATAAGTATTATTGATAAGGTAATATTATAGTCTATTTTTTATGTTACTTTTCGAGGCTCATTTTTCTCGTGATC AATTAGGTTTCAAGAAAGCTTGTGAAAAAAGAGAGGATAACATCTTGATCAATTAGGTTTCTGCAGCTACAATGGCAGGG ATAAACTTTGAAGCCAAACATATTGACAGCCATGATGTTCTGAAAATACTTGCAGCTGAAGGTGTTGAGTACCTTTTATC TTGTGAAGGGAAGGTAGCTTATTTTCTGCTGAACCCTCTTTCTCTATTATGTGTGTTGTACTTGCTAGACAATAGGTTGA TTAATTGATTCAGGTTCAGATCAACGGGGGCAGTTTAAGTAGTTTAACTTCTAAACCATCCTCAGAAAGTTCTCTTTTTT CTCTGAATAAGTAAAAAGGTTAAAATTCAACTTAATTTAAAAAAAATCCCAGCATTTGCGTAGTTTGTGATCTTTGTTAT TGTAGCTAATGTTTGCTATCTTTGATTCATGAGGTTAGGTACCCTTGTCAGAATGCGATGGGAAAGTCATCTGCCTATTT TTCTCTGCCAACTGGTGCAGGCCTTGCAGAGCTTTCGTTCCCCGTCTGGTTGAACTTTATGAAACACTGAGAAAGAGGGG AATAAATCTAGAGATCATCTTCGTCTCCTTTGACCGCGAGGAAGATGGATTCAATGAACACCTCAAGAGTATGCCATGGT TAGCTGTTCCATTTGATGTAAATTTGCATAGAAGACTGATTGACAGATACCAAGTTGATCAAATCCCATCATTCATTCCA CTATATTCAGAGGACTTAATTGTTGAAAAAAACTTGATTGAGTGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCAC AAGGAAGAGGCATGAGGAATTGAAAGCCATAGATAAAAGGAAGCGCGAAGAAGCAAATTTGGAAGAGCTATTGGCACACG AGGGACGGGACTTTCTGATCTCCGGAGATGATAGAAAGGTAGCCTAATGCCCTGGTTGGAGTTTTTGTTCAGAATCTAGT TACGCGTTACGTGCATATGACATGTCTCATTTTTGCAGGTACCTGTATCTGAGCTAGCTGGTAAAACCATAGGTCTATAT TTCTGTGCCTACTGGTCTCCTCCAAGCCGTGCCTTTACCGCGCAACTTACAGATGTATACAACAATCTCAAGGCTACAAA AGGCAATTGCTTTGAGATTGTTCTAATCTCAACAGATAGGGACCATAAGGAATTCAATGTCAACAGAAGTAGTACGCCAT GGCTTGCTATCCCATATGAGGACAGAACAAGGCATGACCTTTGTAGAATCTATGATATAAAGGGAATTCCAGCTTTGGTT CTTATTGGACCTGATGGCAAAGTCATTAGTTTAAATGGGAAGTTTATGGTAACCTCATATGGTGCAGATGCTTTCCCATT TACTGAATCGCGGATAAGAGACCTAGAAGCAGCTTTAAGAAAGGAAGGAGAGGCTTTGCCTCAACAGGTTGAGGATGTCA AGCATGAACATGTTCTGAAATTGGATATGGCCAAAGCATATGTGTGTGATTCCTGTAAAGAACAAGGGAAGTTCTGGGCA TTCTCGTGTGATGTCTGTGATTATGATCTTCATCCAAGTTGTCTCGAAAAGGTCAACAAAGACCAAGATTGGTAGAGAAT AGAACCACAGAAGTATGCAACAAGTGGTATTGAAGAGCTACTTTGTGGTGATGGAATTCAACTTGTCAAACGTAAGAAAC TCATCAACTGCATACCTTTCTTTCCTATCAGTCTAAGTTGAGAGTATAATTAGTGCATGTTTGGAAACTACTCTATAATT GATTCTGAAGCTTGTATCAATTCTGTGAGTACCTTCTAGGTTTCAGAATCGATTCTGATAAAAGAGAAGTTGATCCAATT ATGTAATTACTCTATGCCAGAAAGGTTAGGCAATGCACTTTATTTAAAAGAATGTATGGCTTATATTTAGAGCATGCCTG TATAATATTTTTGATATGACTTGATATATACCCACCATAAAATTTAATGGTGCAAAGAAAAAAATAGTGCTAATTTCACC TCATGGTAACGCTCTATTTCTAAGACTCCTCCTTATTGGTTGAAATCCATCTGAGTCCAAATGAATTGGAAGTCAGGCTC ACTTCCTGAATATCGAGTAAACGATGGTGTTGTCTCTTTGCAATGGGCACACATGATCTAATGCATATCCTGAATTGTG
CDS sequence (LotjaGi1g1v0396600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGGATAAACTTTGAAGCCAAACATATTGACAGCCATGATGTTCTGAAAATACTTGCAGCTGAAGGTGTTGAGTA CCTTTTATCTTGTGAAGGGAAGGTACCCTTGTCAGAATGCGATGGGAAAGTCATCTGCCTATTTTTCTCTGCCAACTGGT GCAGGCCTTGCAGAGCTTTCGTTCCCCGTCTGGTTGAACTTTATGAAACACTGAGAAAGAGGGGAATAAATCTAGAGATC ATCTTCGTCTCCTTTGACCGCGAGGAAGATGGATTCAATGAACACCTCAAGAGTATGCCATGGTTAGCTGTTCCATTTGA TGTAAATTTGCATAGAAGACTGATTGACAGATACCAAGTTGATCAAATCCCATCATTCATTCCACTATATTCAGAGGACT TAATTGTTGAAAAAAACTTGATTGAGTGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCACAAGGAAGAGGCATGAG GAATTGAAAGCCATAGATAAAAGGAAGCGCGAAGAAGCAAATTTGGAAGAGCTATTGGCACACGAGGGACGGGACTTTCT GATCTCCGGAGATGATAGAAAGGTACCTGTATCTGAGCTAGCTGGTAAAACCATAGGTCTATATTTCTGTGCCTACTGGT CTCCTCCAAGCCGTGCCTTTACCGCGCAACTTACAGATGTATACAACAATCTCAAGGCTACAAAAGGCAATTGCTTTGAG ATTGTTCTAATCTCAACAGATAGGGACCATAAGGAATTCAATGTCAACAGAAGTAGTACGCCATGGCTTGCTATCCCATA TGAGGACAGAACAAGGCATGACCTTTGTAGAATCTATGATATAAAGGGAATTCCAGCTTTGGTTCTTATTGGACCTGATG GCAAAGTCATTAGTTTAAATGGGAAGTTTATGGTAACCTCATATGGTGCAGATGCTTTCCCATTTACTGAATCGCGGATA AGAGACCTAGAAGCAGCTTTAAGAAAGGAAGGAGAGGCTTTGCCTCAACAGGTTGAGGATGTCAAGCATGAACATGTTCT GAAATTGGATATGGCCAAAGCATATGTGTGTGATTCCTGTAAAGAACAAGGGAAGTTCTGGGCATTCTCGTGTGATGTCT GTGATTATGATCTTCATCCAAGTTGTCTCGAAAAGGTCAACAAAGACCAAGATTGGTAG
Protein sequence (LotjaGi1g1v0396600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGINFEAKHIDSHDVLKILAAEGVEYLLSCEGKVPLSECDGKVICLFFSANWCRPCRAFVPRLVELYETLRKRGINLEI IFVSFDREEDGFNEHLKSMPWLAVPFDVNLHRRLIDRYQVDQIPSFIPLYSEDLIVEKNLIECIEDYGADAFPFTRKRHE ELKAIDKRKREEANLEELLAHEGRDFLISGDDRKVPVSELAGKTIGLYFCAYWSPPSRAFTAQLTDVYNNLKATKGNCFE IVLISTDRDHKEFNVNRSSTPWLAIPYEDRTRHDLCRIYDIKGIPALVLIGPDGKVISLNGKFMVTSYGADAFPFTESRI RDLEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSCKEQGKFWAFSCDVCDYDLHPSCLEKVNKDQDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 386 | 380 | 1.7E-192 | – | |
| PANTHER | 7 | 386 | 380 | 1.7E-192 | – | |
| ProSiteProfiles | 16 | 170 | 155 | 10.47 | ||
| Gene3D | 21 | 158 | 138 | 1.3E-31 | ||
| SUPERFAMILY | 35 | 133 | 99 | 2.12E-17 | ||
| Pfam | 42 | 127 | 86 | 1.7E-23 | ||
| ProSiteProfiles | 177 | 325 | 149 | 8.968 | ||
| Gene3D | 178 | 317 | 140 | 2.5E-31 | ||
| CDD | 185 | 315 | 131 | 3.44608E-58 | – | |
| SUPERFAMILY | 189 | 297 | 109 | 3.5E-17 | ||
| Pfam | 202 | 296 | 95 | 1.8E-23 | ||
| SUPERFAMILY | 334 | 384 | 51 | 5.38E-11 | – | |
| Pfam | 342 | 382 | 41 | 3.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. |
Expression pattern of LotjaGi1g1v0396600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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