Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0400500
Transcript ID	LotjaGi1g1v0400500.2
Related isoforms 1	LotjaGi1g1v0400500.1
Lotus japonicus genome version	Gifu v1.2
Description	Eukaryotic translation initiation factor 3 subunit L; TAIR: AT5G25754.1 RNA polymerase I-associated factor PAF67; Swiss-Prot: sp\|A7SDW5\|EIF3L_NEMVE Eukaryotic translation initiation factor 3 subunit L; TrEMBL-Plants: tr\|I1JUS7\|I1JUS7_SOYBN Eukaryotic translation initiation factor 3 subunit L; Found in the gene: LotjaGi1g1v0400500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:88826099..88829426) extracted from Lotus japonicus Gifu genome v1.2.

CTCGAATCAGTGTTCCAAAGCAAACATGGCGTCTCAGGATTTCGATGAGCAGCGGCAGCCACCACAAGAAGCCGGGTACG ACCCAAACTACGTCCCCGACTCCGTCAAATCCTTCGTCGTCCACCTCTACCGCCACATCCGCGAGAAGAATGTCTACGAG ATCCACCAGATGTACGAAACCTCTTTCCAAACCCTATCGGAGCGTCTCTTCAAGGATACTCCATGGCCCTCCGTCGACGC CGTCGCTCACTACGTCGACAACGACCACGTCTTCTGCCTCCTCTATAGGGAGATGTGGTTCCGCCACCTCTATGCTCGTC TTACCCCCACTCTCCGCCAGAGGATTGATTCGTGGGATAACTACTGCTCGCTCTTTCAGGTTGTGCTCCACGGCGTTGTG AATATGCAGCTGCCGAATCAGTGGCTTTGGGATATGGTTGATGAGTTCGTTTACCAGTTTCAGAGCTTCTGTCAGTATCG TGCGAAGATGAAGAACAAAACTGAACAGGAAATCGCTCTCCTGAGACAGTTTGATCAGGTCAGCTACATAACAAGCTGTT AATTTTGTGAAATTGCTTACATATTCAGAATTGTGGTTGCAATTATGCTGTTATTTGTGTGAAATTGGGAACATATTCGG AATTGTGGTTGCTGAAAGCGATTTTGTGCATGTTTAGAAGCTTTTCTACAATTGATTTTTAGGTTTAAATCATTGCCGGT TAGAGAAGCTTATGCGAGTAGTTTCTGATTCTCGGAATTGATGATGAGCTGATTCAAACATGCTATTGAAATCCTGAACT AACTGTGTTTGTTCTGTTAATGTTTATGGTTTAGGCATGGAATGTTTATGGGGTGCTGAACTACTTGCAAGCGCTTGTGG AGAAATCTGCAATTATTCAGATTCTGGAGCAGGAGAAGGAGGGATTGGAGCAGTTTACTGCTACGGATGGATACGATTAC AATGGGGGAAGCAATGTGTTGAAGGTTTTGGGGTATTTCAGCATGGTTGGTTTGCTTAGGGTGCACTGTCTTCTGGGGGA TTATCACACTGGTCTTAAGTGCCTGCTTCCTATTGATATTACTCAGCAGGGTGTTTACACCAGTGTCATTGGCAGTCACA TCACTACTATTTACCACTATGGTTTTGCCAATCTTATGCTCCGCAGGTCATGACTTTTGTTGCTTTATTGCTTAAGTTGA TTGTTTGTTTTATTGTTGTGTATGATGACCAATAATTTTTAGATTAATATCTTTACAATGTTAGTGATTGGTGTTGTCTT TACTTCTGAAGAAAAAAATTACCTGCTAAAATCTTAGTCGTTTGAGGGAGCTTTGCAGTGTTTGCTGGATGAATGGTTTC CTTTTTTTGGTATAGTTTGGAAGTGTTTATGTACCCCCCCTAAAAAAAGAGTTGGTAGTGTTGATTGTGGTTGTTGGTTG TCTTATATTACCTATCATCTTGTAAAATGCAAGCATGGAATGAAATTATGAATGTTTTCTTTCTGTAGCTTTTATGGTTT ATATATATATTACTATTGAGGATTTAAAATTTATTCATGGATTAGAAAGCAGAGAACACTCAACCACTTTGGAGTATTAT GTACTTGCAAGCTTCATCTTATTTAAAGACCGGACCAACATATCGTTGGTGTTATTTGTCATATATGGCGGGTTTTTGGC TCTCCACCATGGCCGATATCCCGCTATTACTTGTCATATATGACGGGTTTTTGGCTCTCCGCCATAGGCCGCCACCCGCG ATTAACAACCTTGTATATTATCCCATACTTCATTTTTGGAAGTAGTGCAATTTAAGTATACCATGTCACATATTGTTGGC TTATAATGATGCTTCATTGAAAATGGCTGTTTGAACATGTGTTATGAAGAATTTAATTCCACAGGATGTTTTTTTTTGTA CATTATTTTATTATTATTGTTTTCCCTTCTCATTTATCTTTTTACATGTCCTAACCTGTAGCCTTTTCTACAGATATGTG GAAGCAATCCGTGAATTTAACAAAATCCTCTTGTACATCTATAAGACGAAGCAGTATCATAATAAATCGCCACAATATGA GCAGATACTGAAGAAGAATGAACAAATGTATGCCTTGCTGGCAATCTGCCTTTCACTCTGCCCCCAAAGCAGGCTTGTTG ATGAAACTGTGAACTCTCAGCTCCGAGAGAAGTATGGTGAAAAGATGGGTAGAATGCAGCGTTATGATGATGAGGCTTTT GCCATGTATGATGAGCTCTTCTCATATGCATGTCCCAAGTTCATTACCCCATCAGCACCTAGCTTTGACGAACCTCTAGT AAATTACAATCAGGTATACCTTGGATTCCATCTGTGTTCCAGACTAACAGAAGCATTTTTTAGTGTGTGCGTAGCCTTCC AGAAAAACTTCAAATTTGAATTTAGCTCCAATTGACTTCAAATTTGTTTTCTCTATATTATTTTACTTTTGAATATTTCT CTCTGCTTCCTGGGGGGTATACATCTGATTTGAAATACCTAACCTCATTAAAGAAAGTTAATGAACTATTGAATGTGAAT TTTGGCACTTGAAGTTGAGTTCCTATGAGTTTCATTAAGAACTAATGTTTTCAGTATTTTCCCCCCACTTTTCTTCTTTT GAATGTTAATTTATTTGTTTACACTTCACACATTTCTTGCTGTTAATCTTATATTGGACCTCAATTGACACCTTGAGCCT GTATGGTTTAGGGCTTTGGTTAAATAAAAGGTTTAGAATTATCTGTCAGAGTTGCTCAACTTGTCAGAGATAATTGTTTA GATGTTCTTTTTGCGCTCTTTTTTCCTATGTGAAATGCTAAATATTATTTGTTTTGTCAGGATGCTTATAGACTTCAATT GAAATTGTTCCTTTATGAAGCCAAGCAACAACAGTTGTTATCAGGCCTCCGTACCTTCTTGAAAGTGTACTCAACAATCT CCCTTGCAAAACTTGCAAGTTACATGGAAGTGGATGAACCCACCTTAAGGTTGCAACTTGCCAGACATCCAATTATTTTA GAATTTACTTTATCAATATGAAATATAAATTTGGACATAAGTTGACACGCACTTCAATTTGATGCTTGGCAGGACTATCT TGACGACATACAAGCATAAGACACATGCTGTTGATAGTGATGGAAAAATTACATCAAATGCAGATGTGGATTTCTATATT GATGAAGTAAGCGCTATTTCCCTTTGCTTAATACTTTGCTCATCGGAGGGGTTCTTATTTCTGAATACTGCTTTGAAATG TTAACAGAATTTCTGGGCCATATTAGCGCCAGTGTAATTTTCAGTTGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0400500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCTCAGGATTTCGATGAGCAGCGGCAGCCACCACAAGAAGCCGGGTACGACCCAAACTACGTCCCCGACTCCGT CAAATCCTTCGTCGTCCACCTCTACCGCCACATCCGCGAGAAGAATGTCTACGAGATCCACCAGATGTACGAAACCTCTT TCCAAACCCTATCGGAGCGTCTCTTCAAGGATACTCCATGGCCCTCCGTCGACGCCGTCGCTCACTACGTCGACAACGAC CACGTCTTCTGCCTCCTCTATAGGGAGATGTGGTTCCGCCACCTCTATGCTCGTCTTACCCCCACTCTCCGCCAGAGGAT TGATTCGTGGGATAACTACTGCTCGCTCTTTCAGGTTGTGCTCCACGGCGTTGTGAATATGCAGCTGCCGAATCAGTGGC TTTGGGATATGGTTGATGAGTTCGTTTACCAGTTTCAGAGCTTCTGTCAGTATCGTGCGAAGATGAAGAACAAAACTGAA CAGGAAATCGCTCTCCTGAGACAGTTTGATCAGGCATGGAATGTTTATGGGGTGCTGAACTACTTGCAAGCGCTTGTGGA GAAATCTGCAATTATTCAGATTCTGGAGCAGGAGAAGGAGGGATTGGAGCAGTTTACTGCTACGGATGGATACGATTACA ATGGGGGAAGCAATGTGTTGAAGGTTTTGGGGTATTTCAGCATGGTTGGTTTGCTTAGGGTGCACTGTCTTCTGGGGGAT TATCACACTGGTCTTAAGTGCCTGCTTCCTATTGATATTACTCAGCAGGGTGTTTACACCAGTGTCATTGGCAGTCACAT CACTACTATTTACCACTATGGTTTTGCCAATCTTATGCTCCGCAGATATGTGGAAGCAATCCGTGAATTTAACAAAATCC TCTTGTACATCTATAAGACGAAGCAGTATCATAATAAATCGCCACAATATGAGCAGATACTGAAGAAGAATGAACAAATG TATGCCTTGCTGGCAATCTGCCTTTCACTCTGCCCCCAAAGCAGGCTTGTTGATGAAACTGTGAACTCTCAGCTCCGAGA GAAGTATGGTGAAAAGATGGGTAGAATGCAGCGTTATGATGATGAGGCTTTTGCCATGTATGATGAGCTCTTCTCATATG CATGTCCCAAGTTCATTACCCCATCAGCACCTAGCTTTGACGAACCTCTAGTAAATTACAATCAGGATGCTTATAGACTT CAATTGAAATTGTTCCTTTATGAAGCCAAGCAACAACAGTTGTTATCAGGCCTCCGTACCTTCTTGAAAGTGTACTCAAC AATCTCCCTTGCAAAACTTGCAAGTTACATGGAAGTGGATGAACCCACCTTAAGGACTATCTTGACGACATACAAGCATA AGACACATGCTGTTGATAGTGATGGAAAAATTACATCAAATGCAGATGTGGATTTCTATATTGATGAAGTAAGCGCTATT TCCCTTTGCTTAATACTTTGCTCATCGGAGGGGTTCTTATTTCTGAATACTGCTTTGAAATGTTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0400500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASQDFDEQRQPPQEAGYDPNYVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQTLSERLFKDTPWPSVDAVAHYVDND HVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTE QEIALLRQFDQAWNVYGVLNYLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGD YHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIYKTKQYHNKSPQYEQILKKNEQM YALLAICLSLCPQSRLVDETVNSQLREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITPSAPSFDEPLVNYNQDAYRL QLKLFLYEAKQQQLLSGLRTFLKVYSTISLAKLASYMEVDEPTLRTILTTYKHKTHAVDSDGKITSNADVDFYIDEVSAI SLCLILCSSEGFLFLNTALKC

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	22	22	-	–
Hamap	MF_03011 View details on MF_03011 Search for proteins/transripts with this domain View external data on MF_03011	1	501	501	27.3	IPR019382 Show description in modal box View details on IPR019382 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13242 View details on PTHR13242 Search for proteins/transripts with this domain View external data on PTHR13242	8	476	469	2.7E-222	IPR019382 Show description in modal box View details on IPR019382 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF10255 View details on PF10255 Search for proteins/transripts with this domain View external data on PF10255	105	476	372	5.6E-139	IPR019382 Show description in modal box View details on IPR019382 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50250 View details on PS50250 Search for proteins/transripts with this domain View external data on PS50250	289	488	200	13.997	IPR000717 Show description in modal box View details on IPR000717 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003743 View details of GO:0003743 AmiGO InterPro QuickGO	Molecular function	Translation initiation factor activity	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.	Subterm of View details of GO:0008135
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of View details of GO:0044424
GO:0005852 View details of GO:0005852 AmiGO InterPro QuickGO	Cellular component	Eukaryotic translation initiation factor 3 complex	A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.	Subterm of View details of GO:0032991 View details of GO:0044444

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0400500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi1g1v0400500.2