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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000717
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We have found 76 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.294s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0079039.1
n.a. 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao] gi|508709931|gb|EOY01828.1| chr0 30486903 30489419 +
3 domain predictions
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Lj0g3v0098349.1
n.a. PREDICTED: COP9 signalosome complex subunit 1-like [Glycine max] gi|356505043|ref|XP_003521302.1| chr0 41623176 41626994 +
3 domain predictions
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Lj0g3v0236679.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356505465|ref|XP_003521511.1| chr0 122663961 122665209 -
3 domain predictions
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Lj1g3v2035090.1
n.a. 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao] gi|508709931|gb|EOY01828.1| chr1 23795586 23799207 +
3 domain predictions
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Lj1g3v2249530.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3-like [Glycine max] gi|356517716|ref|XP_003527532.1| chr1 26438346 26442149 -
3 domain predictions
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Lj1g3v2925260.1
n.a. PREDICTED: COP9 signalosome complex subunit 7-like isoform X2 [Cicer arietinum] gi|502106421|ref|XP_004492938.1| chr1 32980710 32986952 -
3 domain predictions
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Lj1g3v2925260.2
n.a. PREDICTED: COP9 signalosome complex subunit 7-like isoform X1 [Cicer arietinum] gi|502106416|ref|XP_004492937.1| chr1 32980710 32986952 -
2 domain predictions
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Lj1g3v3833910.1
n.a. PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine max] gi|356511828|ref|XP_003524624.1| chr1 43478764 43480975 -
3 domain predictions
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Lj1g3v3833910.2
n.a. PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine max] gi|356511828|ref|XP_003524624.1| chr1 43478764 43484388 -
3 domain predictions
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Lj1g3v4551350.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Glycine max] gi|356572345|ref|XP_003554329.1| chr1 53794958 53802224 -
3 domain predictions
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Lj1g3v4763830.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356524672|ref|XP_003530952.1| chr1 57166257 57170553 +
3 domain predictions
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Lj1g3v4763830.2
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356512984|ref|XP_003525194.1| chr1 57166257 57170553 +
3 domain predictions
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Lj2g3v1102930.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Glycine max] gi|356534937|ref|XP_003536007.1| chr2 17744268 17748675 +
3 domain predictions
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Lj2g3v1533010.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Cicer arietinum] gi|502162298|ref|XP_004512457.1| chr2 24048902 24053335 -
3 domain predictions
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Lj3g3v2645580.1
n.a. PREDICTED: COP9 signalosome complex subunit 2-like [Glycine max] gi|356503363|ref|XP_003520479.1| chr3 32275962 32278364 -
3 domain predictions
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Lj3g3v3736620.1
n.a. PREDICTED: COP9 signalosome complex subunit 4-like [Glycine max] gi|356531693|ref|XP_003534411.1| chr3 45165371 45170585 -
3 domain predictions
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Lj4g3v1389180.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 6-like isoform X2 [Cicer arietinum] gi|502176264|ref|XP_004515835.1| chr4 21591232 21601994 -
3 domain predictions
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Lj4g3v2140300.1
n.a. PREDICTED: PCI domain-containing protein 2-like [Glycine max] gi|356561961|ref|XP_003549244.1| chr4 29690151 29695426 +
2 domain predictions
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Lj4g3v2775610.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Cicer arietinum] gi|502132476|ref|XP_004501379.1| chr4 37197795 37203229 -
3 domain predictions
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Lj5g3v0091560.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 6-like isoform X2 [Cicer arietinum] gi|502176264|ref|XP_004515835.1| chr5 700394 704580 +
3 domain predictions
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Lj5g3v0091560.2
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 6-like isoform X2 [Cicer arietinum] gi|502176264|ref|XP_004515835.1| chr5 700534 703916 +
3 domain predictions
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Lj5g3v0875450.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine max] gi|356500541|ref|XP_003519090.1| chr5 12652412 12655673 -
3 domain predictions
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LotjaGi1g1v0397800.1
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 LjG1.1_chr1 88432059 88435947 +
4 domain predictions
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LotjaGi1g1v0397800.2
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 LjG1.1_chr1 88434121 88435613 +
4 domain predictions
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LotjaGi1g1v0397800.3
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 LjG1.1_chr1 88434122 88435613 +
4 domain predictions
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LotjaGi1g1v0397800.4
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 LjG1.1_chr1 88434145 88435613 +
4 domain predictions
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LotjaGi1g1v0397800.5
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 LjG1.1_chr1 88434181 88435613 +
4 domain predictions
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LotjaGi1g1v0397800.6
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 LjG1.1_chr1 88434345 88435613 +
4 domain predictions
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LotjaGi1g1v0400500.1
n.a. Eukaryotic translation initiation factor 3 subunit L; TAIR: AT5G25754.1 RNA polymerase I-associated factor PAF67; Swiss-Prot: sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3 subunit L; TrEMBL-Plants: tr|I1JUS7|I1JUS7_SOYBN Eukaryotic translation initiation factor 3 subunit L; Found in the gene: LotjaGi1g1v0400500 LjG1.1_chr1 88824852 88829512 -
2 domain predictions
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LotjaGi1g1v0400500.2
n.a. Eukaryotic translation initiation factor 3 subunit L; TAIR: AT5G25754.1 RNA polymerase I-associated factor PAF67; Swiss-Prot: sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3 subunit L; TrEMBL-Plants: tr|I1JUS7|I1JUS7_SOYBN Eukaryotic translation initiation factor 3 subunit L; Found in the gene: LotjaGi1g1v0400500 LjG1.1_chr1 88826099 88829426 -
2 domain predictions
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LotjaGi1g1v0431400.1
n.a. 26S proteasome regulatory subunit; TAIR: AT1G20200.1 PAM domain (PCI/PINT associated module) protein; Swiss-Prot: sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3; TrEMBL-Plants: tr|I1K7H0|I1K7H0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0431400 LjG1.1_chr1 92636379 92640580 -
4 domain predictions
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LotjaGi1g1v0431400.2
n.a. 26S proteasome regulatory subunit; TAIR: AT1G20200.1 PAM domain (PCI/PINT associated module) protein; Swiss-Prot: sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3; TrEMBL-Plants: tr|I3S3W2|I3S3W2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0431400 LjG1.1_chr1 92636961 92639526 -
4 domain predictions
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LotjaGi1g1v0485700.1
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0485700 LjG1.1_chr1 99888869 99892109 -
4 domain predictions
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LotjaGi1g1v0485700.2
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0485700 LjG1.1_chr1 99889637 99890960 -
4 domain predictions
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LotjaGi1g1v0485700.3
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0485700 LjG1.1_chr1 99889637 99891111 -
4 domain predictions
 –
LotjaGi1g1v0485700.4
n.a. 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0485700 LjG1.1_chr1 99889637 99891131 -
4 domain predictions
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LotjaGi1g1v0496000.1
n.a. COP9 signalosome complex subunit-like protein; TAIR: AT1G02090.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7; TrEMBL-Plants: tr|A0A0S3SAE1|A0A0S3SAE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0496000 LjG1.1_chr1 101086025 101092538 +
3 domain predictions
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LotjaGi1g1v0496000.2
n.a. COP9 signalosome complex subunit-like protein; TAIR: AT1G02090.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7; TrEMBL-Plants: tr|A0A0S3SAE1|A0A0S3SAE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0496000 LjG1.1_chr1 101086198 101090021 +
3 domain predictions
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LotjaGi1g1v0652500.1
n.a. COP9 signalosome complex subunit 2; TAIR: AT2G26990.1 proteasome family protein; Swiss-Prot: sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2; TrEMBL-Plants: tr|G7L2Q4|G7L2Q4_MEDTR COP9 signalosome complex subunit 2; Found in the gene: LotjaGi1g1v0652500 LjG1.1_chr1 121179055 121192170 +
4 domain predictions
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LotjaGi1g1v0652500.2
n.a. COP9 signalosome complex subunit 2; TAIR: AT2G26990.1 proteasome family protein; Swiss-Prot: sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2; TrEMBL-Plants: tr|G7L2Q4|G7L2Q4_MEDTR COP9 signalosome complex subunit 2; Found in the gene: LotjaGi1g1v0652500 LjG1.1_chr1 121180751 121191508 +
3 domain predictions
 –
LotjaGi1g1v0652500.3
n.a. COP9 signalosome complex subunit 2; TAIR: AT2G26990.1 proteasome family protein; Swiss-Prot: sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2; TrEMBL-Plants: tr|G7L2Q4|G7L2Q4_MEDTR COP9 signalosome complex subunit 2; Found in the gene: LotjaGi1g1v0652500 LjG1.1_chr1 121180751 121191508 +
4 domain predictions
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LotjaGi1g1v0698800.1
n.a. Eukaryotic translation initiation factor 3 subunit A; TAIR: AT4G11420.1 eukaryotic translation initiation factor 3A; Swiss-Prot: sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A; TrEMBL-Plants: tr|A0A0S3RYH0|A0A0S3RYH0_PHAAN Eukaryotic translation initiation factor 3 subunit A; Found in the gene: LotjaGi1g1v0698800 LjG1.1_chr1 126661760 126669739 +
4 domain predictions
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LotjaGi1g1v0698800.2
n.a. Eukaryotic translation initiation factor 3 subunit A; TAIR: AT4G11420.1 eukaryotic translation initiation factor 3A; Swiss-Prot: sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A; TrEMBL-Plants: tr|A0A0S3RYH0|A0A0S3RYH0_PHAAN Eukaryotic translation initiation factor 3 subunit A; Found in the gene: LotjaGi1g1v0698800 LjG1.1_chr1 126662515 126668706 +
4 domain predictions
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LotjaGi1g1v0742700.1
n.a. Eukaryotic translation initiation factor 3 subunit C; TAIR: AT3G56150.1 eukaryotic translation initiation factor 3C; Swiss-Prot: sp|Q9XHM1|EIF3C_MEDTR Eukaryotic translation initiation factor 3 subunit C; TrEMBL-Plants: tr|A0A0L9U9H6|A0A0L9U9H6_PHAAN Eukaryotic translation initiation factor 3 subunit C; Found in the gene: LotjaGi1g1v0742700 LjG1.1_chr1 131631878 131636875 +
4 domain predictions
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LotjaGi1g1v0742700.2
n.a. Eukaryotic translation initiation factor 3 subunit C; TAIR: AT3G56150.1 eukaryotic translation initiation factor 3C; Swiss-Prot: sp|Q9XHM1|EIF3C_MEDTR Eukaryotic translation initiation factor 3 subunit C; TrEMBL-Plants: tr|A0A0L9U9H6|A0A0L9U9H6_PHAAN Eukaryotic translation initiation factor 3 subunit C; Found in the gene: LotjaGi1g1v0742700 LjG1.1_chr1 131632455 131636452 +
4 domain predictions
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LotjaGi2g1v0267200.1
n.a. Eukaryotic translation initiation factor 3 subunit M; TAIR: AT5G15610.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M; TrEMBL-Plants: tr|A0A072U6R5|A0A072U6R5_MEDTR Eukaryotic translation initiation factor 3 subunit M; Found in the gene: LotjaGi2g1v0267200 LjG1.1_chr2 73695236 73699738 +
4 domain predictions
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LotjaGi2g1v0339600.1
n.a. 26S proteasome subunit, putative; TAIR: AT5G45620.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8RWF0|PS13A_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A; TrEMBL-Plants: tr|A0A1J7HWA1|A0A1J7HWA1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0339600 LjG1.1_chr2 81654445 81659276 -
4 domain predictions
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LotjaGi2g1v0339600.2
n.a. 26S proteasome non-ATPase regulatory subunit 13; TAIR: AT4G19006.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8RWF0|PS13A_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A; TrEMBL-Plants: tr|I3SEP3|I3SEP3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0339600 LjG1.1_chr2 81655543 81659125 -
3 domain predictions
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LotjaGi3g1v0376700.1
n.a. COP9 signalosome complex subunit 1; TAIR: AT3G61140.1 COP9 signalosome complex subunit 1; Swiss-Prot: sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1; TrEMBL-Plants: tr|I1JKE3|I1JKE3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376700 LjG1.1_chr3 76926989 76931373 +
4 domain predictions
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LotjaGi3g1v0466400.2
n.a. 26S proteasome non-ATPase regulatory subunit family protein; TAIR: AT1G64520.1 regulatory particle non-ATPase 12A; Swiss-Prot: sp|Q9SGW3|PSD8A_ARATH 26S proteasome non-ATPase regulatory subunit 8 homolog A; TrEMBL-Plants: tr|A0A0S3R0N9|A0A0S3R0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0466400 LjG1.1_chr3 88180807 88183765 +
2 domain predictions
 –