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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0405500 |
| Transcript ID | LotjaGi1g1v0405500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carotenoid cleavage dioxygenase; TAIR: AT4G32810.1 carotenoid cleavage dioxygenase 8; Swiss-Prot: sp|Q8LIY8|CCD8B_ORYSJ Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic; TrEMBL-Plants: tr|Q6Q623|Q6Q623_PEA Dioxygenase RAMOSUS1; Found in the gene: LotjaGi1g1v0405500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89471433..89473575) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGAAAGGAACGTATATAAGGAATGGCCCGGGCATGTGGCACATAGGGGACTACAACTTCAGGCACCTCTTTGACGG CTACGCCACTCTGGTCAAGCTTAACTTCGAGAATGGCCGGTTAATCGCCGGCCACAGGCAAATCGAGTCTCAAGCCTACG AAGCCGCGAAGAAAAACCAGAAGATATGTTACCGTGAATTCTCTGAGGTGCCTAAAGCAGAAAGCTTCTTAGCCTACGTG GGGGAGCTCGCAAGCTTGTTCTCTGGCGCATCTCTCACTGATAACGCCAACACTGGCGTTGTCAAGCTCGGCGACGGGAG GGTGGTGTGTCTCACGGAGACCCAGAAAGGGTCCATTGTGATAGACCCTGACACACTGGACACGCTTAGGAAATTCGAGT ACAGTGACTCTCTAGGGGGTCTAATTCACTCTGCACATCCCATTGTGACAGACAATGAGTTTTTAACGTTGCTTCCAGAT CTTGTTAGACCAGGGTATGTCATGAACTAACTATTCTAAAAACTTAAATTATTCTATTGGGTGAAGACACACGAATGATT TTATATTATATTTATAATAGGTACCTAGTGGTGAGAATGGAGCCTGGTACTAATGAGAGGAAGGTGATCGGTCGGGTCGA CTGTCGCGGCGGGCCATCACCCGGTTGGGTCCATTCTTTCCCTGCTACTGACCACTATGTTATTGTGCCTGAAATGCCTC TTAGATACTGTGCTCAGAATTTACTAAAGGCTGAGCCTACTCCACTGTACAAGTTCCAGTGGCACCCTGAATCCAAAGCT TTTATGCATGTCATGTGCAAGACTAGTGGAAAGATTGTAAGTAATAGTGTTATATATCTCTGATGTGTATGATATGCTAA TAGCTTTGCTCTATGTTCCATGTGTTGATTTTCTATATCCATCATATATGTCTTGGGGTTTAATTTTTTCCAAGTAACAA TATTTAGACTCTCAAATAGTATAGACACCTCATTTTTTTCTCTCATCTCTATCATTATCACATCCATCATATATATCATA TCCATTACTTGTCTCTTCTATTCCTTTCTCATTTTGGGTGTCAGTCAGCTGTATACACTGTCTGTGCATGTCTACAAATC AATTTTCTTATTTTTGGAATGTGATTTTGAAGGTGGCAAGTGTGGAAGTGCCTCTGTTCATCACTTTCCATTTCATAAAT GCGTACGAAGAGGAAGATGAAGATGGGAGGGTGACGGCAGTTATTGCTGACTGTTGTGAGCACAATTCAAATACTGACAT TCTTGAAAGGCTTAGATTACAGAATCTTCGCTCATTCAATGGCCAAGATGTTCTGCCAGATGCTAAGTACTGATTTGTAT CTTATTTTATCTTAATTGGCCTTTCCTGAACTGAAAGGTCATATAAGTGAATGCAAAACTAAAACCATAGTTTAATGTAT TGAATATTAATTAACAGGGTTGGTCGGTTCAGAATACCTCTGGATGGGAGTCCAAATGGAACACTGGAACCAGCATTAGA CCCAAATGAACATGGGAAAGGCATGGACATGTGCAGCATAAACCCTAACTATTTAGGGAAGAAATACAGATATGCCTATG CTTGTGGAGCAAACCGACCTTGTAACTTTCCCAACACCCTCACCAAGGTTTGTTAATTTATAATTCAGTTCTTTATTTCT TTGCTTATATATATATATATATGTGTGTTTGTGTATGCGCGCGCGTGCGTGTCTTTGGTTCCTTAACCGAACGTTCTTAA TTTGACATGTAATGTGCAGCTTGATTTAGAGTTGAAAAAGGCTAAGACCTGGTATGATGAAGGTGCTGTGCCATCTGAAC CATTCTTTGTGGCTCGACCAGGAGCAACAGAGGAAGATGATGGTTAGAACTAGCTACTACATTTGAAGCCTGTTCTCTCT AATATTCAGCCCCTTCTTGTTCTCCATTACAATTGACCTGCAATGTCTAACCTAATTTATTTTCTCCCATATTGCAGGCG TGGTAATCTCTATAATCAGTGGGAAAAATGGAGAAGGATATGCTTTGTTGTTAGATGGCTCCACCTTTGAAGAGATTGCT AGAGCTGAGTTCCCTCATGGTATTCCATATGGATTGCATGGATGCTGGGTTCCAAAAAAGTAG
CDS sequence (LotjaGi1g1v0405500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAAGGAACGTATATAAGGAATGGCCCGGGCATGTGGCACATAGGGGACTACAACTTCAGGCACCTCTTTGACGG CTACGCCACTCTGGTCAAGCTTAACTTCGAGAATGGCCGGTTAATCGCCGGCCACAGGCAAATCGAGTCTCAAGCCTACG AAGCCGCGAAGAAAAACCAGAAGATATGTTACCGTGAATTCTCTGAGGTGCCTAAAGCAGAAAGCTTCTTAGCCTACGTG GGGGAGCTCGCAAGCTTGTTCTCTGGCGCATCTCTCACTGATAACGCCAACACTGGCGTTGTCAAGCTCGGCGACGGGAG GGTGGTGTGTCTCACGGAGACCCAGAAAGGGTCCATTGTGATAGACCCTGACACACTGGACACGCTTAGGAAATTCGAGT ACAGTGACTCTCTAGGGGGTCTAATTCACTCTGCACATCCCATTGTGACAGACAATGAGTTTTTAACGTTGCTTCCAGAT CTTGTTAGACCAGGGTACCTAGTGGTGAGAATGGAGCCTGGTACTAATGAGAGGAAGGTGATCGGTCGGGTCGACTGTCG CGGCGGGCCATCACCCGGTTGGGTCCATTCTTTCCCTGCTACTGACCACTATGTTATTGTGCCTGAAATGCCTCTTAGAT ACTGTGCTCAGAATTTACTAAAGGCTGAGCCTACTCCACTGTACAAGTTCCAGTGGCACCCTGAATCCAAAGCTTTTATG CATGTCATGTGCAAGACTAGTGGAAAGATTGTGGCAAGTGTGGAAGTGCCTCTGTTCATCACTTTCCATTTCATAAATGC GTACGAAGAGGAAGATGAAGATGGGAGGGTGACGGCAGTTATTGCTGACTGTTGTGAGCACAATTCAAATACTGACATTC TTGAAAGGCTTAGATTACAGAATCTTCGCTCATTCAATGGCCAAGATGTTCTGCCAGATGCTAAGGTTGGTCGGTTCAGA ATACCTCTGGATGGGAGTCCAAATGGAACACTGGAACCAGCATTAGACCCAAATGAACATGGGAAAGGCATGGACATGTG CAGCATAAACCCTAACTATTTAGGGAAGAAATACAGATATGCCTATGCTTGTGGAGCAAACCGACCTTGTAACTTTCCCA ACACCCTCACCAAGCTTGATTTAGAGTTGAAAAAGGCTAAGACCTGGTATGATGAAGGTGCTGTGCCATCTGAACCATTC TTTGTGGCTCGACCAGGAGCAACAGAGGAAGATGATGGCGTGGTAATCTCTATAATCAGTGGGAAAAATGGAGAAGGATA TGCTTTGTTGTTAGATGGCTCCACCTTTGAAGAGATTGCTAGAGCTGAGTTCCCTCATGGTATTCCATATGGATTGCATG GATGCTGGGTTCCAAAAAAGTAG
Protein sequence (LotjaGi1g1v0405500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKGTYIRNGPGMWHIGDYNFRHLFDGYATLVKLNFENGRLIAGHRQIESQAYEAAKKNQKICYREFSEVPKAESFLAYV GELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPDTLDTLRKFEYSDSLGGLIHSAHPIVTDNEFLTLLPD LVRPGYLVVRMEPGTNERKVIGRVDCRGGPSPGWVHSFPATDHYVIVPEMPLRYCAQNLLKAEPTPLYKFQWHPESKAFM HVMCKTSGKIVASVEVPLFITFHFINAYEEEDEDGRVTAVIADCCEHNSNTDILERLRLQNLRSFNGQDVLPDAKVGRFR IPLDGSPNGTLEPALDPNEHGKGMDMCSINPNYLGKKYRYAYACGANRPCNFPNTLTKLDLELKKAKTWYDEGAVPSEPF FVARPGATEEDDGVVISIISGKNGEGYALLLDGSTFEEIARAEFPHGIPYGLHGCWVPKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 459 | 457 | 4.0E-232 | – | |
| Pfam | 3 | 458 | 456 | 6.2E-92 | ||
| PANTHER | 3 | 459 | 457 | 4.0E-232 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0405500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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