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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004294
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We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.412s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0073129.1
n.a. PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase-like [Glycine max] gi|356518342|ref|XP_003527838.1| chr0 27364311 27369978 +
3 domain predictions
2 GO terms
Lj0g3v0073129.3
n.a. PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase-like [Glycine max] gi|356518342|ref|XP_003527838.1| chr0 27367225 27369978 +
3 domain predictions
2 GO terms
Lj0g3v0247029.1
n.a. RecName: Full=Carotenoid 9,10(9',10')-cleavage dioxygenase 1; AltName: Full=PsCCD1; AltName: Full=PsNCED1gi|22335695|dbj|BAC10549.1| nine-cis-epoxycarotenoid dioxygenase1 [Pisum sativum] gi|75157294|sp|Q8LP17.1|CCD1_PEA chr0 128022910 128030136 -
3 domain predictions
2 GO terms
Lj0g3v0300579.1
n.a. 9-cis-epoxycarotenoid dioxygenase [Caragana korshinskii] gi|256561143|gb|ACU86971.1| chr0 156205267 156207293 +
3 domain predictions
2 GO terms
Lj0g3v0335089.1
n.a. Dioxygenase RAMOSUS1 [Medicago truncatula] gi|357466653|ref|XP_003603611.1| chr0 175420297 175422087 +
3 domain predictions
2 GO terms
Lj1g3v2066520.1
n.a. PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase-like [Glycine max] gi|356518342|ref|XP_003527838.1| chr1 24407858 24412023 -
3 domain predictions
2 GO terms
Lj1g3v2067530.1
n.a. PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase-like [Glycine max] gi|356518342|ref|XP_003527838.1| chr1 24414778 24418830 -
3 domain predictions
2 GO terms
Lj1g3v2068760.1
n.a. Dioxygenase RAMOSUS1 [Medicago truncatula] gi|357466651|ref|XP_003603610.1| chr1 24489142 24493422 -
3 domain predictions
2 GO terms
Lj2g3v1561960.1
n.a. PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic-like [Cicer arietinum] gi|502161858|ref|XP_004512308.1| chr2 24956875 24958873 -
3 domain predictions
2 GO terms
Lj4g3v2467280.1
n.a. PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like, partial [Cicer arietinum] gi|502142346|ref|XP_004504912.1| chr4 33677997 33680793 +
3 domain predictions
2 GO terms
LotjaGi1g1v0404300_LC.1
n.a. Carotenoid 9,10(9',10')-cleavage dioxygenase; TAIR: AT3G14440.1 nine-cis-epoxycarotenoid dioxygenase 3; Swiss-Prot: sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|A0A151TDM8|A0A151TDM8_CAJCA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; Found in the gene: LotjaGi1g1v0404300_LC LjG1.1_chr1 89326394 89331409 -
3 domain predictions
2 GO terms
LotjaGi1g1v0404300_LC.2
n.a. Carotenoid cleavage dioxygenase; TAIR: AT4G19170.1 nine-cis-epoxycarotenoid dioxygenase 4; Swiss-Prot: sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|A0A151TDM8|A0A151TDM8_CAJCA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; Found in the gene: LotjaGi1g1v0404300_LC LjG1.1_chr1 89326624 89332055 -
3 domain predictions
2 GO terms
LotjaGi1g1v0404300_LC.3
n.a. Carotenoid 9,10(9',10')-cleavage dioxygenase; TAIR: AT3G14440.1 nine-cis-epoxycarotenoid dioxygenase 3; Swiss-Prot: sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|A0A151TDM8|A0A151TDM8_CAJCA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; Found in the gene: LotjaGi1g1v0404300_LC LjG1.1_chr1 89326624 89332400 -
3 domain predictions
2 GO terms
LotjaGi1g1v0404300_LC.4
n.a. Carotenoid 9,10(9',10')-cleavage dioxygenase; TAIR: AT3G14440.1 nine-cis-epoxycarotenoid dioxygenase 3; Swiss-Prot: sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|A0A151TDM8|A0A151TDM8_CAJCA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; Found in the gene: LotjaGi1g1v0404300_LC LjG1.1_chr1 89326721 89332361 -
3 domain predictions
2 GO terms
LotjaGi1g1v0404500.1
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|K7KTX6|K7KTX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0404500 LjG1.1_chr1 89339199 89343572 -
3 domain predictions
2 GO terms
LotjaGi1g1v0404600.1
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q84KG5|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase; TrEMBL-Plants: tr|K7KTX6|K7KTX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0404600 LjG1.1_chr1 89346539 89352004 -
3 domain predictions
2 GO terms
LotjaGi1g1v0405500.1
n.a. Carotenoid cleavage dioxygenase; TAIR: AT4G32810.1 carotenoid cleavage dioxygenase 8; Swiss-Prot: sp|Q8LIY8|CCD8B_ORYSJ Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic; TrEMBL-Plants: tr|I1JUV6|I1JUV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0405500 LjG1.1_chr1 89469650 89474248 +
3 domain predictions
2 GO terms
LotjaGi1g1v0405500.2
n.a. Carotenoid cleavage dioxygenase; TAIR: AT4G32810.1 carotenoid cleavage dioxygenase 8; Swiss-Prot: sp|Q8LIY8|CCD8B_ORYSJ Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic; TrEMBL-Plants: tr|Q6Q623|Q6Q623_PEA Dioxygenase RAMOSUS1; Found in the gene: LotjaGi1g1v0405500 LjG1.1_chr1 89471433 89473575 +
3 domain predictions
2 GO terms
LotjaGi1g1v0599900.1
n.a. Carotenoid cleavage dioxygenase; TAIR: AT2G44990.3 carotenoid cleavage dioxygenase 7; Swiss-Prot: sp|Q7XJM2|CCD7_ARATH Carotenoid cleavage dioxygenase 7, chloroplastic; TrEMBL-Plants: tr|H6S0L9|H6S0L9_LOTJA CCD7-like protein; Found in the gene: LotjaGi1g1v0599900 LjG1.1_chr1 114441713 114446346 +
3 domain predictions
2 GO terms
LotjaGi2g1v0350600.1
n.a. 9-cis-epoxycarotenoid dioxygenase, putative; TAIR: AT4G19170.1 nine-cis-epoxycarotenoid dioxygenase 4; Swiss-Prot: sp|O49675|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic; TrEMBL-Plants: tr|G7K3Y7|G7K3Y7_MEDTR Carotenoid cleavage dioxygenase 4a-6; Found in the gene: LotjaGi2g1v0350600 LjG1.1_chr2 82713125 82715932 -
3 domain predictions
2 GO terms
LotjaGi3g1v0061400.1
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|B5BLW2|B5BLW2_MEDTR Carotenoid cleavage dioxygenase; Found in the gene: LotjaGi3g1v0061400 LjG1.1_chr3 6495543 6503005 -
3 domain predictions
2 GO terms
LotjaGi3g1v0061400.2
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|B5BLW2|B5BLW2_MEDTR Carotenoid cleavage dioxygenase; Found in the gene: LotjaGi3g1v0061400 LjG1.1_chr3 6495638 6502998 -
3 domain predictions
2 GO terms
LotjaGi3g1v0061400.3
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|B5BLW2|B5BLW2_MEDTR Carotenoid cleavage dioxygenase; Found in the gene: LotjaGi3g1v0061400 LjG1.1_chr3 6495655 6503012 -
3 domain predictions
2 GO terms
LotjaGi3g1v0061400.4
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|B5BLW2|B5BLW2_MEDTR Carotenoid cleavage dioxygenase; Found in the gene: LotjaGi3g1v0061400 LjG1.1_chr3 6496787 6502774 -
3 domain predictions
2 GO terms
LotjaGi3g1v0061400.5
n.a. Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr|B5BLW2|B5BLW2_MEDTR Carotenoid cleavage dioxygenase; Found in the gene: LotjaGi3g1v0061400 LjG1.1_chr3 6496787 6502792 -
3 domain predictions
2 GO terms
LotjaGi3g1v0145900.1
n.a. 9-cis-epoxycarotenoid dioxygenase; TAIR: AT3G14440.1 nine-cis-epoxycarotenoid dioxygenase 3; Swiss-Prot: sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; TrEMBL-Plants: tr|C8CEB0|C8CEB0_9FABA 9-cis-epoxycarotenoid dioxygenase; Found in the gene: LotjaGi3g1v0145900 LjG1.1_chr3 19425074 19428164 -
3 domain predictions
2 GO terms
LotjaGi4g1v0359900.1
n.a. 9-cis-epoxycarotenoid-dioxygenase; TAIR: AT1G30100.1 nine-cis-epoxycarotenoid dioxygenase 5; Swiss-Prot: sp|Q9C6Z1|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic; TrEMBL-Plants: tr|Q8LP15|Q8LP15_PEA Nine-cis-epoxycarotenoid dioxygenase3; Found in the gene: LotjaGi4g1v0359900 LjG1.1_chr4 73861319 73864012 +
3 domain predictions
2 GO terms