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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424100 |
| Transcript ID | LotjaGi1g1v0424100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G75500.1 Walls Are Thin 1; Swiss-Prot: sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1; TrEMBL-Plants: tr|A0A151TC65|A0A151TC65_CAJCA WAT1-related protein; Found in the gene: LotjaGi1g1v0424100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91865740..91870064) extracted from Lotus japonicus Gifu genome v1.2.
GATCATGATTACTTGCTCTATCTTAGCTAGCTCTCTTTTATTGAATTTGAAGTAGTTTATAATCCAAGTGCGATTGGGGT TGTGTTTGTGAAGGGTGGAATATCAAAGAAAAGAATGTGGGAGACAAGCAAAAACATTTGAAGGGTACCAACAGTTATTG TGGGTCATCCCCATTGCTTCTATACTCTCTCTTCACAATATTTATACCCTCACTCTTCTATCTCCTCTTCATTCCTCCCT TAACCAATTAACTAGACTAGCATCTAGCTAGCTAGACCTCAATTATTTGCTTAATTAGGTCGAATCCAATGGCTGATTCT GCAGGCTCAGCCTCTTCCGGCAGAATGTGGTGCTCTGTCCCTGAACGGCTTCAGCTGCATGGAGCCATGCTGGCCCTGCA ATTTGGCTATGCTGGCTTCCATGTTGTCTCAAGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACA GAAACATCATTGCTTTACTTCTTCTCCTTCCTTTTGCTTACTTCTTGGAAAAGTTAGTGCTACATCCTCTAACAAATCAA TTCATATATACAATTGACACACATAAAGTGGACAAAATTGCTAATGTTAGCAACAGTTTGCTTGATTAATTTGCAACTAA TGTTAATTTCTTTCACTTTTGTCCAGGAAAGAGAGGCCTGCAATCACTTTAAACTTCCTCTTCCAGTTCTTTCTTCTGGC CCTTGTCGGGTATGTTCCATTTTTACACCACATACAATTAAAATTAGATCATTGAAAAGAGAGATGAAATTGCTAAAAGC TCAAGGGAGACATTCTGTTTTGTCTTTTTTCAAAAAATAAATAAATAAAAAAGATTTGATGCTGAGAACCACAAGGTGAA GAAGCTATCTTAAGTAGATGGTCATGGTCCTTATAATTTATATTAATTTTGCATTGCACATACAGGATTACAGCAAACCA AGGTTTCTACTTGCTTGGGTTGGACAACACATCCCCAACCTTTGCATCGGCCATACAGAACTCTGTCCCAGCCATCACAT TTCTCATGGCAGCTATACTCAGGCAAGCCCTTTATTACTAAATTACTTGTTCTTCAGCCGTTAACTAGGTTATACATGCC TCAGTCTCCATGTACGATAACATTTTTGAAAATTCTTCTACAACCGATTCTCAAGCTAAAATCAATTTCGCATGAAAAAA ATTATCGGACTACCTTTTGGGTGCGTGCATGCCGGAATTGATTTCAGGAAAAAAAAAATGATTCAAACATACTGTCAGAT AGTTATAACATGTTTGGTTCACTTTAGAATCACTTATGTTTTGTTAGAAGCTTTATGATAGTTTCAGATTAAACATGTTT CGAATTATGTGAAAATCGTGAAACCAAACACTCATCATGATTCTAAGCATGTATAGTGACTTTTATTATGTGCAAATTTT GAAAGCAAATGTCCACTTACATAAATTAGAATTACAATTTCAGGATAGAGCAAGTGCGGTTAAACCGAAAAGATGGGATA GCCAAGGTGGCGGGAACGGTGTTCTGTGTTATCGGGGCAAGTGTGATCACACTCTACAAGGGTCCAACCATATACAGCCC GGTTCCACCTCTCAACAGCATCATCACCCCACATCCACAGACACAGTTACTTGGCTCAGTCTCACTCTCACTAGGAGATG CTAATGGCAAAAATTGGACCCTTGGATGCCTCTACCTCATCGGACACTGCTTGTCGTGGTCCGGTTGGCTTGTCCTGCAA GCGCCCATCCTTAAGAAGTACCCGGCACGCCTCTCTGTCACTTCCTATACATGTTTCTTTGGACTCATCCAATTCCTTGT TATTGCTTTGATTGTTGAAAGAGATGCTCAAGCTTGGATCTTCCATTCTGGTGGAGAAGTTTTCACTATTTTGTATGCGG TTAGTATAACTACTTATCATACTAATAACATATTTGAATCAATTTTTTTTTGTAGTTGATTTTGACATGCAAAAACTACT TTCAGAAGCTTTTCTTCAAAATTAATTTTGACTACATAATTAAAATTGTAGATGAGGTCATTGTAATTTGTAAATAAATG TTCGGATATTAAAGTTCATTCACATTGTACTATGATATGTGAACACACGAGATGTTCCCAGCCTAACTTCATAGGGGAAT GAAGAAAGCTGGTCACCTTCTAATAAAAATAAAGTTCTTAAAGTAGACACAGTTTGGCTATAGCTGTTTATGCATATGCG TCTAAGATGTGATATGATATGTATTATGGAAGTTGTTAAGCAATAATGTAGTGAGTGAGATATAATGGTAGGCGTGTGTT TGTGCGTGTGTTGTTGACAATGAAATATACGTGAGAGAGGAGAATTGATGAACTTTTTAAAATTGAGTTTGAAAATTAAT TTTATAATGTAAACATTGCATGCAGGGAGTGGTGGCATCTGGAATTGCCTTCGCTGTACAGATATGGTGCATTGACAGAG GTGGCCCTGTGTTTGTGGCGGTGTATCAACCTGTTCAGACTCTTGTTGTCGCTATTATGGCTTCCCTTGCTTTAGGCGAA GAGTTCTACTTGGGAGGGTAATGAGTCCTATATATCCACCTTAATTATCCTCTTAATTTTCTCTCTTTTTTCTTAATTCT AGTTGTTTACTTTTTAATCTCCTTTTTTCACATAATTATCTCCACTCACTTAATTAAAATTTAATTTTCCCTGCTTGATA ACTTTGACTATCCACTTATAATTAACTTTATATATAAAGCTAATAATATTGAGAAGCATCCAAGAGATGAAGGGTACTCT TTCTTGCACCATTTTGAAAACGACAAATGAAAAACCACTAAATTAAACAGCAAGGAAGCTAGAGATAAGGCAAGGTTTGA ACCCTTTCAGTGAGGACTGACGCAAATGCGAAAGGCTATGACACACGAATGAACACCTTTTTTTTTCTTTTAATGATTAA TTCCACCTTCATGGGTTAAAAAATGCTTTAAAAGATTACTTTTTTCTTGTTTTGCACTTTTTTGCTTTACACTACTTTTT ATTTCAAAAGAGAAAAAGAATTGCTTAAAATTTGATTGATAAATGCCTTTATTGGTGGATGCCAATTTGAGATCCACTCT TTTGTCAAAATTCACACTCATTTTTTTCATTATTTTTTCATCCATCTTTTAATTTGAAGATTATTCATGTACATCCTAGT GAAAAAGTAAGAGAAGAAAGAGATAATATATGCAATATATTATAGATGAAAATGAATTTCAAGTAAGGTTTCCTTAATTT AACCGTTAATATGAGTCGTTTGATTATGATCCATTGGTTCAAATTTAAAACATGTATACTGTTTAATCTTGATGAGAAAA TCTGAATCAATCAATCTTAATTAGACAATTCAGATTTCTTGATCCCGTGAATGCAGAGTGTGTCTGCATATCAAACTCAA AAGCATTTATATTTTTCTCTGGAATATGAGGTGTTGACAAACTTTTTACTTTATATATGATGTTATAGGATCATTGGGGC AATATTGATCGTTGTGGGACTATACCTAGTCTTGTGGGGTAAAAACGCAGAGAGGAAGTTTGCTATGGAACATGCAGCGA TCATGTCCACTCCGGAGCATAGCAGCATCAGATCCGCAAGTCATGCCAAAACATCACTTACTCAGCCTCTTCTCCCTTCA TCAACGGAAAATGTCTAATCATGAAAATCATAGCTAATAACTTCAATCTGGTTGAGCAAGCATTTTCTTGGACAGTGAAA AGAAAGTAACAAGAGAAGATCAGAAAAAAACGATATCAGTTATACATTACTACTACCCTATGTCAGGAAGCTTGTGTGTG CATGTATGAAAGGGTTTTCATCTTGTCCTGCTTTTGGTTTCTGGTTAATTGATTCAGATGCTTTCTTACTAGGACATTAG ATTAAGGTTTATTTTATGGGAATGTTTAGAATGATCGATACATGTGATCACTTCTGAAATCCCATTGTGCTTTAATTATA TGTTAATTAATGGTTTGATTTACAAAAAGAGATTATTTAAGCTATGGTCAATACTGTCGATGCTAGAGATCATTATGACA TGGGTGATGGGTGGGAAGGTAATTAGGTGACAGAGACTGTCATGATTTTTCAGACGTGAATTGTTAAATTGTTTCAAAAG CTGGACAAGCATGAAGGTTGTGATAAGTCATAATTGTCATGCTCAAATGGGATCATCATTTCGGTTGGATTTGATCAATA TGATCTCTAATTTTCCATCATTGCTCAAGTTTGAAGACGACTACTTAATGAGGTGTATGCTGGTATAATCCCAAGCACAA ATAAC
CDS sequence (LotjaGi1g1v0424100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATTCTGCAGGCTCAGCCTCTTCCGGCAGAATGTGGTGCTCTGTCCCTGAACGGCTTCAGCTGCATGGAGCCAT GCTGGCCCTGCAATTTGGCTATGCTGGCTTCCATGTTGTCTCAAGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTT TCCCAGTCTACAGAAACATCATTGCTTTACTTCTTCTCCTTCCTTTTGCTTACTTCTTGGAAAAGAAAGAGAGGCCTGCA ATCACTTTAAACTTCCTCTTCCAGTTCTTTCTTCTGGCCCTTGTCGGGATTACAGCAAACCAAGGTTTCTACTTGCTTGG GTTGGACAACACATCCCCAACCTTTGCATCGGCCATACAGAACTCTGTCCCAGCCATCACATTTCTCATGGCAGCTATAC TCAGGCAAGCCCTTTATTACTAA
Protein sequence (LotjaGi1g1v0424100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSAGSASSGRMWCSVPERLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPA ITLNFLFQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRQALYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 13 | 135 | 123 | 2.9E-74 | ||
| PANTHER | 13 | 135 | 123 | 2.9E-74 | – | |
| Phobius | 21 | 40 | 20 | - | – | |
| Pfam | 28 | 134 | 107 | 1.0E-12 | ||
| Phobius | 41 | 51 | 11 | - | – | |
| Phobius | 52 | 73 | 22 | - | – | |
| TMHMM | 54 | 73 | 20 | - | – | |
| SUPERFAMILY | 57 | 134 | 78 | 6.67E-9 | – | |
| Phobius | 74 | 84 | 11 | - | – | |
| Phobius | 85 | 106 | 22 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 107 | 117 | 11 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 118 | 138 | 21 | - | – | |
| Phobius | 139 | 140 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0424100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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