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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0426300 |
| Transcript ID | LotjaGi1g1v0426300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GAGA-binding transcriptional activator; TAIR: AT5G42520.1 basic pentacysteine 6; Swiss-Prot: sp|Q8L999|BPC6_ARATH Protein BASIC PENTACYSTEINE6; TrEMBL-Plants: tr|A0A0L9V970|A0A0L9V970_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0426300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92062182..92067146) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGTTTGTGTTGTCTGTGTGCATTAATAACTGACCAGACCAAGTGATAAAAGTTAAAACACACAAACACATAATCTCT TACAAAAAGAAAAACAAGAAAGAGAAACGAAGTAGTAGTAGTAGAAAGTGGGAAGGAGAAAAGTTGCTTACTTACATACA TCCATCTACAGACACTGACAGAAGCCGGTGACCCACAACAATTTCTTCCTTTTTCTCTTCTCTGCCGCGAAGGTTAGGGT TTCAGTCTCCTTCTCCCTTCAACTTCAATCAATCATTCATCTTCATCTTCTTCCTCTTCCGCTTCGAATTCGAGTTTCAA TTTCTCGCTTGATTTGCTCTGGACTTACTTTGACTTGCTATTTCTGTTCTCCAACTCATCAATTCTTCTTCTTCGCATAT CCTCTGATTTCGTGTAATTAATTGTTGTTCATCTGCAATTTTATCCAACCTGATTTACTCACTCTTTGTTTTCTCAACTT TTTTTTGTGGGTATTATTCAGTGTTTCAGAATCTCTTCAAATTGGATCCTCCTTAACTCAAGGCTTCAACTTTGTGTTTG AGATCTAAGCACTGGGTTTTTGATTCCTGTACGGAAATGCATGCATTTCTGTTTCAATTGTATATTAAGTGGAGCCACTT CCCACTACTGGGAATGACCTAGGGTATTGGGTGGTTTAACATTGACTGTAGAAAATTGATTAGAATTAGATAGATAGAAA CACGAAAAAAAGAGTTGCGGCCAACATTGATAAGCTATGGGTATTCAATTATTCATTCAGCTATGCCATAATGAGCCCTT TTGTAGTACTCTCTGCAGTTGCCATTTTCCTTTTTCATGTAGCTCTTGTTAATGAGATAGTTTTTGTTTAGATTCATTGC TTCATTGGGGTTAGGGGTGGAAATAGGCCAGGCGGCTCGTCAGGGGCCTATGGCTCGGCTCATTTAAGGCTCGGCCCGGC TTGACTCGTTTACTAAAAAGGCCAGGCTTAGGCTTTTTAAAAGGCTTATTTAACTAAAAAGGCCAGGCCCAAACAATTTA AAAAGCCTATTTGACCAGATAGGTCGGCCTACTTATATATTATATTATTAATAATATAAATATAATATAATTATATACAA TTTTTTTTATACTGATGTATACTTTAGTATAAAAGAAAACCCTAAGTCCATGCCCTAACCTAGACTAGAAACGTTCCAGA CATATTCAGCATAGCACATCTTCTGCCGCACAGGACGCAGGCTGCAGCCAGTCGCCACTGTTGATCTGCCGCTGCCAAGT CCACCTCTCTTGCAATGATATATGTTTAGTTTTTGAAATGCAATGATACAAGTTTTTTTATTTGAAAAGAAAGTGCAATG ACATATAAAATGCTTATTAGCCCGCCAGCCTAATGACCTTCTTTTGATAAAATTATCTGTTAAGTTAGGCTTTTAAGAAG GCTTGTAGGCCAGGCCAGGCCAAGCCATAAAATTTGGCCTATTGATAGGCCACAGGCCAGGCTTGGGCCACCAAAAGAGA ATGCAGGCCAGGCCTAGGCCACGCAAAGCTTGGCTCGGCTCGGCCTATTTCCACCCCTAATTGGGGTATTAGATTAAGAG TTTGTTTGCAACTTTTCTTCTTAGATTTTCCAATTCAGCGCTTCTCATCTCAAGATTAAAAAAGTATATAGTTATCATCA GCTAACAGTTAACATAGAAGACTCACTAACCAAGAATGAAAGTTCTAGTTGTGATGATAAGGTTCAGAGTAATACATTTT TTTGCTTCTTCCCTGTCCATAGATCAAGTCATTGATTAGGACTGCGACCTTCTTGTGCTAGTTACCTAGAACTCTAGAAG TACTACTTAATGAGGAGCTCAGTCATATGGTTGTTTAGTTATCGTTATTTATGTTTTCAATGCATTCTGTTCAGAACATT ATTACAATCTCTATTTCTTTTTATGTGTCATGAAGAAAAAAAACAACAATCAATATCCTCGTCTATTAAAATTGTTGTCT AACTTCCTAATATGTCTTTCATCTTTCTAATATACTGATTCTCCACTATTCACTTTCTTATTAATTAATTGGATGAAGAT AAGGCTATACCTGTACCTGAGATAATTGTAACTAATTGACGGATAAATAAGAACAAAAAATCTCTTCTAAAATGACACTT AGTCCTTCATATCTGCTCATTTGCTATTCCACGCGCTTTGTTTTTCTTCTCATTTCATCATTGTTCAAATGTTATGCCCT TCATGTCACTTTATGCTTCCGTGGAACTTCTGAAATAAGAATAATGACTAGTGAATGATATAATAACTGGATAGTTCCTT GAACTTTTATTCTTTACTGCTGTTGTGATCACATGCTACCACTACCATTTTTCCATTGAAGTTATTAAAATGGGTTTTGA TTGACCAAAAATCAGGATAAGTTCCTCTAAATTCTATCTTTAACACGCAATCCATGAAAGGTTCCCCACACACATAAATC TTGTTTGTTATTTCCTATTTTTTCTAGGGTGCCCTGGTTAAGATGTGAGTCTTTCATATATTTGCCATTGTTTGCAAGTT GGATTAATTATTAACTGTGAACTTACTCAGTCATGTTCCTGTACAGAGATATTTTGGATCAAGCACCTACTAGGTATATA ATCCATATGTATAAGCATGGTAAGTATTTTAAACTTGTAGCATCTGTTCTTATAGGCATTGTTGATAGAGAAATCTCGTA ACCGTATATTCTAGACCCCAATAAAGAGGACAATGGCAGAAGTACTCTAATGATGCCAAATTGCCAATATAAAACATGAT GAGTTTCTATTTTGATATGCAGGACTTCTGGCTAGCTGCTGTTTGATTAGCCAAGTTCCAAATTGGTTAAGGAAGCCTAG AGTCGATATTTAGCTTTTGCTACAAATTGTGGGTTTCTGATGGATGATGCTGGGCATCATGAAAATGGAAGGCACAAAAC AGATCCATATAAAACTGCTCAGGGACAGGTATCCAAAAGCACCTTTACTTCATAAATTAGTTTATTTCAAAACCAACATG TGAATGGGATCTTGGGTTTGATCCTTATATTCAAATGTATGGGCTAAAAAAACAGTTAGGGGGAGTCCCCGTCTTAGGCG CCCGACAGTACCCTAGAAGTTTAGTCTCTCGCTGACTTGGTGGGAGGATTTTCTAGGCCACTCAGAAAAGTGTTTGTTAC AATTTAAGTTTACATGAACATACTATTTATAATAGCAGCATGTCATCCCTGTTGAAAGATGCTGGCTTTGATAACAGTTG TCTCAATGTTGCATTGCAGTGGTTGCTGCAGCATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATG CAGCCCTTCAAGAAAGAAATCTGGCCCTATCTGAGAAAAAGACCGCACTTGCAGAGCGTGACATGGCATTCCTGCAGCGA GATACTGCAATTGCGGAGCGAAATAATGCAATCATGGAACGAGATAATGCAATTGCAGCTCTTCAGTATCGAGATAACTC CTTCACTGGTGGCAATATACAAGCGTGTCCTCCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACACCATCCTCAGC AACAGGTACACCATTTAACTAACATGGGTGAGGCTTCTTACAGCACAAGGGAAATGCACACATCTGATGCCCTCCCAGCT GTACCCATCTCCCCCGAGGCTGTGAAATCACGGCGTGTTAGACGACCAAAGGAAGCTAAGTCAATTTCACCCAACAAGAA GACTTCAAAAGCAGCCAAAAAAATCAAGAAGGAGAGTGAGGACTTGAATAAGATGATGTTTGGCAAGGGACATGACTGGA AGAGTGGTCAGGAAATGGTTAATGGAGGTGATGACCTTAACAGGCAGTTAGGGGTGTCAAAGGCTGATTGGAAAGGTCAA GACCTGGGGTTAAACCAAGTAGCATATGATGAGTCCACCATGCCTGCACCAGTATGCTCTTGTACTGGTGTCCTGAGGCA GTGCTACAAATGGGGCAATGGGGGTTGGCAGTCTTCCTGTTGCACAACAACCCTGTCAATGTATCCACTTCCAGCAGTGC CAAACAAGAGGCATGCTCGGGTAGGTGGTCGAAAGATGAGTGGCAGTGCTTTCAGTAAGCTGCTTAGTCGTCTTGCAGCC GAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCATTGGGCCAAACATGGTACTAATCGCTACATCACAATAAA GTAGATTGTGAGGTATTTTGTTCTGGGGCAGCAATACCTAAATAGAAACAGCTTTTAGTGATCAACCATGGATTCTCAAG TCAGACCAGGAGGGAAGTAAGGTAACTTGTGATGGGCATCAGGGAAACTAATAACTAGAGTATGCCCTTACCTAATTTAG GATGAACCATGCTTGCTGCTGAATGTTGGCTATATTAGTGATTGAAGAAATGATTATAGAGTCATCCTTGTCATTTGTAC CGCCGAGATGATCTGGTGGCATCAGTGGAATGTATAAATGTAGCATGTCAAATAGTCTTGGTTAATGCATGTAGTGCGTA AACCAGAATAATTGTATCCGCTCGTGTCTTTAGTCTTCTTCAAACCCTGTCTGAGTTAATATGTAGAACTGATGGTGTAT GTTTATTTTATCCTCATTCATGTATGTCATTTTTCTCCACCTTGGAATCCTATGTGAATAAAGATTTTATGGGTGGTTGC GACCAATGACGAATATAGGAGGACTTAGTAGTTGACATATTTTCCTATCTTAATTATCTAGGTGAAAATTTAATACCTGG AATGTTTGCATTAACTAGTGCTACTATGACTTATTTTCTTGGGATCGGGATCCTCTTCAGCCTTTACATTTCATTTATAG CCATAAATCAAAATAATTAATGGTTGAGATGTGTTAAGGTGAAAAACAAATTCAAACACTAAATTTTTTAAGGGTGATAT ACATT
CDS sequence (LotjaGi1g1v0426300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGCTGGGCATCATGAAAATGGAAGGCACAAAACAGATCCATATAAAACTGCTCAGGGACAGTGGTTGCTGCA GCATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATGCAGCCCTTCAAGAAAGAAATCTGGCCCTAT CTGAGAAAAAGACCGCACTTGCAGAGCGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAGCGAAATAATGCA ATCATGGAACGAGATAATGCAATTGCAGCTCTTCAGTATCGAGATAACTCCTTCACTGGTGGCAATATACAAGCGTGTCC TCCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACACCATCCTCAGCAACAGGTACACCATTTAACTAACATGGGTG AGGCTTCTTACAGCACAAGGGAAATGCACACATCTGATGCCCTCCCAGCTGTACCCATCTCCCCCGAGGCTGTGAAATCA CGGCGTGTTAGACGACCAAAGGAAGCTAAGTCAATTTCACCCAACAAGAAGACTTCAAAAGCAGCCAAAAAAATCAAGAA GGAGAGTGAGGACTTGAATAAGATGATGTTTGGCAAGGGACATGACTGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTG ATGACCTTAACAGGCAGTTAGGGGTGTCAAAGGCTGATTGGAAAGGTCAAGACCTGGGGTTAAACCAAGTAGCATATGAT GAGTCCACCATGCCTGCACCAGTATGCTCTTGTACTGGTGTCCTGAGGCAGTGCTACAAATGGGGCAATGGGGGTTGGCA GTCTTCCTGTTGCACAACAACCCTGTCAATGTATCCACTTCCAGCAGTGCCAAACAAGAGGCATGCTCGGGTAGGTGGTC GAAAGATGAGTGGCAGTGCTTTCAGTAAGCTGCTTAGTCGTCTTGCAGCCGAAGGTCATGATCTGTCAAACCCTGTTGAC CTCAAGGACCATTGGGCCAAACATGGTACTAATCGCTACATCACAATAAAGTAG
Protein sequence (LotjaGi1g1v0426300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDAGHHENGRHKTDPYKTAQGQWLLQHQPSMKQIMAIMAERDAALQERNLALSEKKTALAERDMAFLQRDTAIAERNNA IMERDNAIAALQYRDNSFTGGNIQACPPGCQISRGVKHIHHPQQQVHHLTNMGEASYSTREMHTSDALPAVPISPEAVKS RRVRRPKEAKSISPNKKTSKAAKKIKKESEDLNKMMFGKGHDWKSGQEMVNGGDDLNRQLGVSKADWKGQDLGLNQVAYD ESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGHDLSNPVD LKDHWAKHGTNRYITIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 7.2E-148 | – | |
| PANTHER | 1 | 337 | 337 | 7.2E-148 | ||
| SMART | 1 | 337 | 337 | 1.3E-177 | ||
| Pfam | 1 | 337 | 337 | 5.8E-106 | ||
| MobiDBLite | 159 | 187 | 29 | - | – | |
| MobiDBLite | 159 | 174 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0426300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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