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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010409
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.866s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2153400.1
n.a. GAGA-binding transcriptional activator [Medicago truncatula] gi|357438223|ref|XP_003589387.1| chr1 25956452 25958942 +
4 domain predictions
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Lj1g3v2153410.1
n.a. PREDICTED: protein BASIC PENTACYSTEINE6 [Vitis vinifera] gi|225458065|ref|XP_002278539.1| chr1 25958936 25959989 +
4 domain predictions
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Lj2g3v0635650.1
n.a. GAGA-binding transcriptional activator [Lotus japonicus] gi|319718195|gb|ADV59399.1| chr2 9810843 9812488 +
4 domain predictions
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Lj4g3v2401030.1
n.a. GAGA-binding transcriptional activator [Lotus japonicus] gi|319718199|gb|ADV59401.1| chr4 33307102 33309156 +
4 domain predictions
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Lj4g3v2882160.1
n.a. GAGA-binding transcriptional activator [Lotus japonicus] gi|319718201|gb|ADV59402.1| chr4 38566829 38571093 +
4 domain predictions
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LotjaGi1g1v0426300.1
n.a. GAGA-binding transcriptional activator; TAIR: AT5G42520.1 basic pentacysteine 6; Swiss-Prot: sp|Q8L999|BPC6_ARATH Protein BASIC PENTACYSTEINE6; TrEMBL-Plants: tr|A0A0L9V970|A0A0L9V970_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0426300 LjG1.1_chr1 92062182 92067146 +
4 domain predictions
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LotjaGi1g1v0426300.2
n.a. GAGA-binding transcriptional activator; TAIR: AT5G42520.2 basic pentacysteine 6; Swiss-Prot: sp|Q8L999|BPC6_ARATH Protein BASIC PENTACYSTEINE6; TrEMBL-Plants: tr|I1JT52|I1JT52_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0426300 LjG1.1_chr1 92065345 92066425 +
4 domain predictions
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LotjaGi2g1v0188000.1
n.a. GAGA-binding transcriptional activator; TAIR: AT2G01930.1 basic pentacysteine1; Swiss-Prot: sp|Q9SKD0|BPC1_ARATH Protein BASIC PENTACYSTEINE1; TrEMBL-Plants: tr|H1ZN99|H1ZN99_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi2g1v0188000 LjG1.1_chr2 61756612 61759925 +
4 domain predictions
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LotjaGi2g1v0188000.2
n.a. GAGA-binding transcriptional activator; TAIR: AT2G01930.1 basic pentacysteine1; Swiss-Prot: sp|Q9SKD0|BPC1_ARATH Protein BASIC PENTACYSTEINE1; TrEMBL-Plants: tr|H1ZN99|H1ZN99_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi2g1v0188000 LjG1.1_chr2 61757236 61758102 +
4 domain predictions
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LotjaGi4g1v0354200.1
n.a. GAGA-binding transcriptional activator; TAIR: AT1G14685.1 basic pentacysteine 2; Swiss-Prot: sp|Q9LDE2|BPC2_ARATH Protein BASIC PENTACYSTEINE2; TrEMBL-Plants: tr|H1ZNA1|H1ZNA1_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0354200 LjG1.1_chr4 73272644 73275975 +
4 domain predictions
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LotjaGi4g1v0354200.2
n.a. GAGA-binding transcriptional activator; TAIR: AT1G14685.1 basic pentacysteine 2; Swiss-Prot: sp|Q9LDE2|BPC2_ARATH Protein BASIC PENTACYSTEINE2; TrEMBL-Plants: tr|H1ZNA1|H1ZNA1_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0354200 LjG1.1_chr4 73273554 73274390 +
4 domain predictions
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LotjaGi4g1v0420100.1
n.a. GAGA-binding transcriptional activator; TAIR: AT2G21240.1 basic pentacysteine 4; Swiss-Prot: sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4; TrEMBL-Plants: tr|H1ZNA3|H1ZNA3_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0420100 LjG1.1_chr4 79546828 79551507 -
4 domain predictions
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LotjaGi4g1v0420100.2
n.a. GAGA-binding transcriptional activator; TAIR: AT2G21240.1 basic pentacysteine 4; Swiss-Prot: sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4; TrEMBL-Plants: tr|H1ZNA3|H1ZNA3_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0420100 LjG1.1_chr4 79547488 79548529 -
4 domain predictions
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