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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0457200 |
| Transcript ID | LotjaGi1g1v0457200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-green plastid inner envelope membrane protein; TAIR: AT2G38550.1 Transmembrane proteins 14C; Swiss-Prot: sp|Q9ZVH7|FAX3_ARATH Protein FATTY ACID EXPORT 3, chloroplastic; TrEMBL-Plants: tr|K7MTU1|K7MTU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0457200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96055068..96059520) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAATTCCAAACTTGTCTGTGTTGCCAAACAACCTGCAATTTCATTTCTTCATAAACCCTTTTGCCCTCTTTCATTC CCTTCTCTTCAATTCACACTCCTTCCTTCACCAACCTCTCGTTATCTTCGCCTCCATTCAACTTCAATCTCTCTCTCTCT CTCTCTGGTCATTTGGACCAAAGAGCTATGATGAGTCTATCAATGGATTCAGTTTCGGTGTTAAACCCTAAAATCTCAAA TACCCATTTCTCAGTTCCATCCAACAAGCTACCCCATTGCGTCAAGTTCAATCCTTTGCTCAAACCTCGCACCTTCAGAT TCTCTGCTAACGCTGCTGTTCCAGCGAAGGGGCTTGCCGCATGCTTTCTTGCCCCTAATCGACGGAACCCGTTCATGGTC CGGTTTGCAGCTTCCTCATCGGTAAGATGAAAAAGGAACCATCTTTGTTCTTTTCTTGAAATGGGGTGGTGAGGTTTGAA CTCGAAATGCCATTGCTCAATTAGAGCAATTTTGGTATAAGTAGTGTCTGTTGGCTTTATCAAATGAAAAGCTCAAAGGA ATTTTTGGTGTTTAGAAGAATTTGTGTTCTTGTTTATGTATGATTTTAGGAATTTGAAATTTTAAGATAATGTTGATATG TTGATTATACTGTTATCTTCACTTAATTAGTTAATATAAGAAAATTATATCGGAATAGAGGATATGTTAGGAAATTAAGC AATGATTTTAACAGAAAAGTGCTGTTGATGTGGTCACAAATTCAGGGTTTTAAATTGCCGCTGCAGTTGACGGTTATGTT GCCGAAGCACAATTGCAGTAGCGATGCCGTTGCAGGGACTCAGCTGCAGACTGCAATTTAAAACCGTGTTCACAATTGTG GTTGTGTTGAGCTTCAAAACCTTGACACTGCAATTGTGGACTTCGGCCATTTTTAGAACCTTTCATGTTCTCATGCAAGA ATTATTCTCTCAATCAATTCGTTGAAATTTCAGTATTCTGCGTCTAAAAGTTAGCTAGCTCGTTAGTTTTATCCAATATT CTTGAATTGCTAATCTAGATCGGTAAATGTATAGGAGCAGGGTGAATTTGAAGTGAAGGGGAGTGATGAGAAGCCTCCCA ATGATGTTGCTTCTGAAGAGTCACAGGAAGCGTGGAAGCAGGCTCTGGATACCTTCACAGAACAGGCCGTGAAGCTTAAA GGAATTTCTGAAGAAGCATATGAATTATATTCTAAGAAGGCCATTGTCGTTTTGAAAGATACCTCGGAACAGTTGAAGAT ACAAGCAGAACAGGCAAAGCATGATTTGAGTGTGGCGGCAAAGGAAATTGCAGAGGGAGGGAAAGTGTATTTGTCTGCGG CTTCCGAGAATTCACCTGAGGTAAAGGATATTGTGGAGACATTTACATCCCCAACTGATGATCTCAGCAACATTTCTGGA GTTCAGGACTTCTATGTTGGTGTACCTTATGGTATGTAAATATCCATGTTGTTTGGTAAAGTTTTGATTGGGATTTTTTT TATCTGAATAATATTCCTGGCAGATTCTGTTTACTAACTTAATGCAATAACTGTTAAAAGGCATTTGAATGTAAGGTGTT CCTGATTCCCTGATATAAATGTTCTTGGATACAGTCTTGTGGTGGGGAGCTTGTTGCAAATAGAAAGGAAAAGGGCTTCG ATTGTCATATTAGCATGTGTCTAACTCAAGGAGAGGGAATTAGTTAGTATGTATTGTTTCTTCATACTTTAGGGGATAAG TCCCTTTATACCTTAGGGGTTGAGTAGGATAAATGACTAAGGCTATATTTGGATATCCGTTGGCAGCAGTGCAAACGTAC ATTAAAACTCACTTCGAGACAAAATGAACGGGACTCTTCTTATAGATTAGGAGGAAAGCCCGTTCACGTTCACCCAACTT GTGTTCACGTTCACCCAACTTGTATCCAAAGTCCAAACACATACTAAGTAATCTTCACTTGTAGGAAGGTAGTGGCACCT GATGAGGATCAGGATTGGTACCTGATGGATGACCCTTACAGGACATAAAGTTATATGGATAAGGATTGATATTGACGACT GTTATCTAATAGAGGTAGTTTTTCTATATGTTGGGCTGATGTTATAGGGCCAGCTCATTGCGCCTCAATATCAGTACTGT ACAAATGTCATCTCATTTGATGGTTTAAGACCCATCTAAAATTAAATGATATGATTTTATCATGCTGACTGGGAAAAATT TTAGCCTCTTTTTTCCTCCCAAATTCATAGTTTAATTTGTGATACTTCTAATTTTTGCAGGTTTGGTACTATCTCTTGGT GGCTTCCTTTCGTTTATGGTAACAGGAAGCGTTGCAGCCATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCTTGGCTTT AAGCATTTCAAGTCTGAAGTCGTATAAAAGAGGAAAACCTTCTCCTCTAGCTTTGAAGGGCCAAACAGGTAAAGATCATA TGCTTTGTATGTAAAAGAATGCTCCATCTAAAAGAATCACAAAAAGTAAATGGGTAATAAGAATCTGAAAGTTAAATATA TCTCACTAAGTTTTGCAATAGTATCATGCCAAGGTTATCAAAAGTGAAATCTTACCTAGGATTGCAATGAAACTTAGGGT GGTTGATAGCATTAAGCTGGTAGCATTGTGCGATCCTATGTGTTTAGCAATGATTTTGAAAACAATGCATCATGTGATTA CTTACCATTGGTTTAATTGTAATTCGTTCAATCGGTTTTCGAATGTAACAAAATTTCAGCATGAATTCATATCCTGTAGA AGGGGGGGGGGGGGGGGTTTACAATTTTCTGTAGAAATAAGAACTGCAAGTTCCAATTGACTTAATTATGTTGGGGAATT CCCACTTTCTTTTACTTATTTGAATTTTCTAGTCTTCCGGTATGGGTTGGAAACAACAATTAGCCTTAGCCTTCCTAAAC ATTCATATTAATGCTGACTTGCACATGTTTAACTTTGCCTTATTTAGGGTTTAAATCACGTTTTGCTGAATGATTGATGC CTTCTATGGTTCTACCTGCTTTGATTTGTTTTTATTCACAAAATTTTGAATACTAGACAAGTTGTAGTAAAATTCATCGT AAGTAATTACACGCTAGTGATACTTACGATGTACTTTTCATGTTTTCCATATAATGATGCAATAATGTTTATTGGTTTGC TTATTGATCATGAATCTTATTTTAAATTACCTGTTGTCCTTGCAGCTATAGCAGCTATATTGTTTCTGCGGGAGCTAGCC TCAATAGGCAAAGTAAGGGATTGTTTGTATGAATATTTGTCGAAACTAATCTAACTTTAATGCTGATAACACTTATTTTA GTTTCAAACTTTTGATAGTTTCTTGTTCCTTGCTTTTTTCCAGGGATCATCTTATTTCACCGCCTTGATCAGGTTCTTGA AACTTCGTTATTATTTTTAACTTACATATGAACTTATTGTTTGCACTAGCCTATTCATTTTCCTGCCCTAGCCTTTACTG TTAATCTCAAATTCTCAATCACTTGCTGCTGTGTCATGTTTAGCACAAACAGGGTTGAATTAGAATTAGATTATATTAAT ATTGTGAATGGTGATGTCCTGAAAATAGAATTTCATTTAGTACCATTCTTTGGTCCAATGCTTTTATCATTCGTATCAAT ATTGTGTTACGTAACAATTCTTTGATCATTCAATATTTTGTTATGTAACAATGCTTTTATCATTCATATCAATATTTTGT TATGTAACAACTTTGTTTAACATCTGCAGTGGTGCGGCAGTGGCATTTTATGTCTATAGAATTGTACTGGAACGCAACCA ACAGAAGGGCTCAAACTTGGAAGGTGAAGCAGAAAGCTAGTTGAGTCATGAGTGATAAGGTTAGTCTATTAAAGTTTATA GATACTATATATTTGATCTAAAAAAAGTTTAGGTGAGGTAGTCTTTTCAATGTGAACTTTTTTGCCAGCATCAGTGTTAT TGTCTTCCATTTGCTACTCTGTTAAAAATTGAAGATCAGATTAATAAACTTAAGATCAACATGAAGATGGTCGGCGTAAA TTTTGATGATTATTTTATGATATTCACAGGCTGGGTCATGAAGATTAACTATCGCTGCTGATGGTTACAGTTTCATGCAT GGAAAAATTGAGCATGGAAAATCTTGATATAATTTCACGTATACTTTCATGTATAAATGTGATTTCTCTGGAAAATAACT AAATAGCATATTATGAATGACCTTGCTTTGAGGTGGATGTTATGAATTGATTTTGTTTGTATGCTTAGGATTTAAGTTTT AGGGTTTAGGAAGCTAGACTTTGGATCTCAGTGTGTTAGAATCTATCTTGATACGGTGGATTGATTATTCTCCAAAACTT GCACCAGAAAACATAATAAATACCAGTTTCTTTCATTCTTCAACTCTATTTAA
CDS sequence (LotjaGi1g1v0457200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTCTATCAATGGATTCAGTTTCGGTGTTAAACCCTAAAATCTCAAATACCCATTTCTCAGTTCCATCCAACAA GCTACCCCATTGCGTCAAGTTCAATCCTTTGCTCAAACCTCGCACCTTCAGATTCTCTGCTAACGCTGCTGTTCCAGCGA AGGGGCTTGCCGCATGCTTTCTTGCCCCTAATCGACGGAACCCGTTCATGGTCCGGTTTGCAGCTTCCTCATCGGGTGAA TTTGAAGTGAAGGGGAGTGATGAGAAGCCTCCCAATGATGTTGCTTCTGAAGAGTCACAGGAAGCGTGGAAGCAGGCTCT GGATACCTTCACAGAACAGGCCGTGAAGCTTAAAGGAATTTCTGAAGAAGCATATGAATTATATTCTAAGAAGGCCATTG TCGTTTTGAAAGATACCTCGGAACAGTTGAAGATACAAGCAGAACAGGCAAAGCATGATTTGAGTGTGGCGGCAAAGGAA ATTGCAGAGGGAGGGAAAGTGTATTTGTCTGCGGCTTCCGAGAATTCACCTGAGGTAAAGGATATTGTGGAGACATTTAC ATCCCCAACTGATGATCTCAGCAACATTTCTGGAGTTCAGGACTTCTATGTTGGTGTACCTTATGGTTTGGTACTATCTC TTGGTGGCTTCCTTTCGTTTATGGTAACAGGAAGCGTTGCAGCCATAAGGTTTGGGGTGATTTTAGGTGGTGTCCTCTTG GCTTTAAGCATTTCAAGTCTGAAGTCGTATAAAAGAGGAAAACCTTCTCCTCTAGCTTTGAAGGGCCAAACAGCTATAGC AGCTATATTGTTTCTGCGGGAGCTAGCCTCAATAGGCAAAGGATCATCTTATTTCACCGCCTTGATCAGTGGTGCGGCAG TGGCATTTTATGTCTATAGAATTGTACTGGAACGCAACCAACAGAAGGGCTCAAACTTGGAAGGTGAAGCAGAAAGCTAG
Protein sequence (LotjaGi1g1v0457200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSLSMDSVSVLNPKISNTHFSVPSNKLPHCVKFNPLLKPRTFRFSANAAVPAKGLAACFLAPNRRNPFMVRFAASSSGE FEVKGSDEKPPNDVASEESQEAWKQALDTFTEQAVKLKGISEEAYELYSKKAIVVLKDTSEQLKIQAEQAKHDLSVAAKE IAEGGKVYLSAASENSPEVKDIVETFTSPTDDLSNISGVQDFYVGVPYGLVLSLGGFLSFMVTGSVAAIRFGVILGGVLL ALSISSLKSYKRGKPSPLALKGQTAIAAILFLRELASIGKGSSYFTALISGAAVAFYVYRIVLERNQQKGSNLEGEAES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 201 | 201 | - | – | |
| PANTHER | 40 | 314 | 275 | 7.0E-106 | ||
| PANTHER | 40 | 314 | 275 | 7.0E-106 | – | |
| Coils | 133 | 160 | 28 | - | – | |
| Phobius | 202 | 222 | 21 | - | – | |
| Pfam | 204 | 297 | 94 | 1.6E-8 | ||
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 223 | 227 | 5 | - | – | |
| Phobius | 228 | 247 | 20 | - | – | |
| Phobius | 248 | 258 | 11 | - | – | |
| Phobius | 259 | 278 | 20 | - | – | |
| Phobius | 279 | 283 | 5 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 284 | 303 | 20 | - | – | |
| Phobius | 304 | 319 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0457200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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