Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0461000 |
| Transcript ID | LotjaGi1g1v0461000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|D2CJS7|DNLI_SULZI DNA ligase; TrEMBL-Plants: tr|G7KZ83|G7KZ83_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0461000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96515600..96521050) extracted from Lotus japonicus Gifu genome v1.2.
TGCATCAACAAAGGAGAGCATGATTTGGTGTTGAAGTGAAGAGTGCCGCCGTGGTGAGAAGAAGAAGAATGGAAGGAAGG AGGCGCGGTGGTTGGTGTGGTCGGCGCATAGTCGCAACCAGAAGAGGAACTTCCGGCGCCACCGTCAGCAATGGCTTCCG TCTCAACAGCACCACCAGCAACGATGACAGTGTCGTCAAGAAGCTCTTCGGCCGCGAGATTTGTTCCAAGCCTCACCGTG CTTTCGCCGCCACCACCGCTTCTCACAGATTCCGCACCATGCGTTTGACTCAACAGTACGACACTCACGATCCGAAGGGA CCCTCTTCTCCTTCTCCTCTTCTGCCCTTTCTGATGAAGAGGACTAAGGTTGTTGAGATCGTCGCTGCTAAAGATATAGT GTTTGCTCTTGCTCATTCTGGTCTCTGTGCTGCTTTTAGTAGAGGTGAGGGTTACCCATCGATTCATCACTGTTGTTTGT GTGGTTTTGTGTGTGAATTGAAATTTCCCATCATTACCCTTTTGTTAATTGTTTTCATATATGGATAAAAACCATAGGTT TTGATTTCTGATGCATGAATTTTTAGTACCCATATATGAATCAGTCTATTTTGTAGGAAAAACCCTGGCTTTTGATTTTG ATAATTTTATGTATGAATTGCTGTTTCTCATTATCAATCATTGTCATGTTTTTGTGTAAATTTCATGGCTTTTGATGTTT TATGTGTTCATGAATATTTGACTGGTCAGTATGTGGAGTAGTTGTTAACTGATGTATTTTGTTGAGGTCCTTATTGATGT AATTGTTTAGGGTTGCTTCGCCTTTAAGACCGATGTACTTGTTTAGGCTCTTGTTGATGTACTTGTTTAGGCCTGCTTCG CTTGTAAGGCTCAGGCCTCCAGGACTGTGTGCCCTCATGGACGGCTGACCATATGATTCTCGTAAGTGGTCGTCGATAAT TGCTCTTAGGGATGAGGTCTATCATAACAGATTTGCAAGTCCGACTGACTAGTAAGCGGTGTTATCAAAGACTGGCGCCA TGGCAGAATCTCAATAGCTCATGGCGGGTTTTTGGCTCTCCACCATGGCATGATATCCCACCATCATTAACAACAGTCTT AGTAAGAGAATACAAAGGAACAGATAGGATAGCAATTCCTTTAGGATCCCGAGCGTTTAACCCACATTAATGGAGATGTT TCGTATTCAAACAGAATCTCAAAGGAGCAGATAGGATCACAATTCCGTTAGGATCCCGATCATTTAACCCACATTAATGG AGACGAATCTCATCTTCACACGTCATATCCTTGGGCAGAGCTTAGGTCTTGCTGTGATCTATCTCAACGTCTTGGGGTTT TTTTTTTGTGTGAACAAAATCATTGTTTTGTATAATAAACATGTTATATTTATTTATGTATGAATTTCCATTACCCTTTT GGGCCTTAGTTTTGGTACCATCCTTATAGATTTTCTCACCACCCCAATCTACCGCAGTTATGTTTGCGGGAACCAATTAC ACACCGCATTTAAGATTGCAGAACAGCGGAATACAAGTTATACATTATGCAATGAAAAATGCCAAAAAGGGGATGGTATG AGAATGTAAAGGGGTAGTACCAATAACAATGCCCTACCCATTTTTTCCCATTTATTAGTCATTGTCATATTTGTATGCAA AACCTTGACTTTTGGTTTTATATATTAATTGTCAGTACCATTTCCCATTAGTTAATCTTTGTCTAATGTTTGTATCAAAA CCACGAGATTGGGTTTTTCTTATGTATGAATTCTGTGCAGAAACAAATGAGAGGATTTGTTTATTGAATGTCTGCCCTGA TGAAGTCATCCGCAGCCTCTTCTACAATAAGAACAATGACTCGCTTATTACAGTGTCTGTTTATGCTTCTGAGAGCTTCA GCTCTTTGAAATGCAGATCGACAAGGATTGAGTATGTGCATTCTGCAGCTGTACATTTAATTTTTTTGATTAGATGTTTA CATCTATTTTTGCTTATATGCTCATTCATTCCTGCTTCTAGATACATACGGAGGGCCAAGCCGGATGCTGGCTTTCCTCT TTTCCAGTCGGAGTCTTTAAAATGGCCTGGATTTGTGGAATTTGATGATGTTAACGGAAAGGTCCTAACTTACTCTGCAC AGGATAGGTACCTTCCTCATTCTCTCCTCTTTTTATTCCGTTGCTACTTCTGTGCTTGTTATCTGTATGCACCTCCCATT GGTTATTCGATCTAACCCATTTTCATCCCATGGTAACAGTATATACAAGGTGTTTGATCTTAAAAACTACACCATGCTTT ACTCGATTTCAGATAGGAATGTTCAAGAAATCAAGATCAGGTACTTTCTCCTTTTCGGATTCACTTTCTGCTTCACTGTT CTGGTGTCTGCAGATACCCCCATTTTTCCTAAATAAATTCTGTCAAAGACATGAGCATGGTCATCTTGTTGATACAATCT TGTTTGTTTTTACTTTTTGCTACATAGGTACCGTTATTAGTATTCACTTGTCAAAATTATGTGGGTTGTTATATTTTGAC TGACAGGTGGATCTATATAATCTAGCAAAACCATGTGATTATGTGAACATCCACTTAGCTAATTAAAATACTTAGGTTTC TGTTTCTGGTCCTCATCATTAAGTTCTGTGATAAGTTATGCTTTGCATCGCGCACACACACACATATTTATTACTTGAAA GATGAAAGCCTTAAAGAAATTGAGGGGCTATATAAGTGGGTTATGGATGGATTTTTCGCAACTGAATGTTACAGAAAATT TCCCTGTTAAATGATTTTGAGGAGGCTTTGTTGAAAGAGAAACCAAATTGGAGACAAAAGAGTGATGACTAAGGTGAAAT GGGCTAAAGATGGGGATGTAAATTTTTTACTTTTTTCATACGGTGGCTATACGGAGAAAGAGAGAAAGTTTGGTTAAGAA GTTGAGAATCGCAATCGGGAAACTTGTTTGAGATAGTGAAGTTTTTGCCAAGGAACTTACTGGGTTCCTTACGGAATTGT AGAGTAAGGAGAGTTTGCCTGCACCTTTTTTTGAGAATTCAGATTGGTGATCTATAATTAACTCTTTACAAGGCTTCTTT CATGGAGAGAACCTTTGAAGATGAACTGATGAAATGCTGAGGGCTATTTGGAGCATAGATGCAGATAAGGCTCTGGGTCC TGATGGCCCTTCTCTTGGGTTTTCTTTTTCCATGGTTGTTTATCATTATAGGTCATCTTTTGAAGGTGTTTTCTAAATTA CATAACAATGGAAAATCTAGGGATAATATGGTACTTTTATTTCTTTGATCCCTGAGGGTGTGGATCTGATCTGTTAGAGA TTGCTTAACCATCAGAATTTTCTCCAGTTTGTATAAAGATTTATGATGATTATTCTATTTGTGTGAATGGGGTGTTTGAA GAGACTGTCTTAGAATCAGAACTTTTCATGCTGGTAGATTGATCTTCAATACTGCCAGTGTTGCATATTATTTTGTAATC AACGCAATTAGGAAAAGTAGAGATCTTATTTTTATGACATGTAGTATATATAATTCACTTCTCCGTGCAATTCAGACTCG CATATTAATCTTATGTCTATTGTTTCTCTTTCTCAACACCTCTGAATTTGAGACAAGCTTGGTCTACTTAACTTAGTTCT TTCGTCATAGCGTCTAGATGAAAGGATTTTGTCTCCTGATCTTTCAAGGTTGTTTTCATTCAAATCTGTTTTCAACTCCA AGCTCATTCAATGAATATAGTGTCATCTTAATCTATTTGGAAGTCTAAAGCCTCTTAGGTTAAGTCTTGTACTTGCTCAG TGGTGCTTAACAGAACTAATACCAATAGTAAGGTATAGGTTTGTAGGCCATTAGGCTATTTCTCCTGATATGTATGTTAT ATTTGTTGCTAGCTTAGAATAGCTATTTTGCTGTAGAATATTTTGTCTAGCATTTTTGGAGAAGGTTGGGTGTGGCCTAG GTCGTTGGACCAGTTTTTTTTGTTGACTTGCTTTACTGGTTTTCATTGTAGTTAAGAGCCATGTTTTTGTGGCAATGTGT AACATATTCTACATTTTGGTGCATATGATCGGGAGCATAACACCCTCATCTTTAAGGAGATTTGGCTTCTACTTGGTGTA GGGCACTTGGTCTCCTTAAAGGGATTTCTCTTTTCCCTTGGTTGTTTTCCTTTTTTCAAGGACTAGAACCTCTTATCTTT CTATCTCTTTATTATCTTCTCTTTGTTTTAATGAATTTCATTTTTTGTTACTTGGTATCTTCCTAATATATTGATTAATT GATGGTTTTTTACAGTCCAGGCATCATGTTGTTAATCTTCAATAGAACCAGTGGCTATATTCCCCTTAAGATTATATCCA TTGAAGATGGCACAGTTCTCAAAACATTTAATCATCTACTTCATCGGAATAAGAAGGTGGACTTCATAGAGCAATTCAAT GAAAAGCTTCTTGTCAAGCAAGAAAATGAGAACCTTCAGATACTTGATGTAAGCCTCGTTTTTCCTTTTCCAAAACTAAT TTTATTTCTGTATATGTAATTTCATTTGTGTCTTTTCTTTTAGGCAAATGCTAACCAAGACGCTAGTTAAGGAATTAAAA TTTGGAAGTATTCATTAAAATGTAGTTACCAATGCATGAAATGTTGCACTTTTCGATAAACATTTTCCATTTTTATTCTT AACTAGTGCCGTGAGGGCCACTTGTTTGCAATACATTTTTTTTTTTCAAAATATGATTCTCATGTCTATTTGTGTAATTC CTTTTGTTCATAGGTTCGAAATGCTGAGCTAATGGAAGTAAGCAAAACTGAGTTCATGACCCCATCAGCATTTATCTTTC TGTACGAGAATCAGTTGTTCCTTACATTCAGAAACCGAACAGTTGCTGTTTGGAACTTCCGTGGGGAGCTTGTTACTTCA TTTGAGGATCACCTGTTATGGCATCCAGACTGCAACACAAATAACATATACATAACAAGTGATCAGGATCTAATCATCTC ATACTGCAAGGCTGATTCTGAAGATCAATGGATGGAAGGCAATGGTAATTATATTTGAGCTTATCTGTTCTTCGATTTTT GAATGAATTAATCACAATTAGCTTTGAATTTGTTAAAAGTGATTTGATACAATCATGTAATCATAACATGCTTCTTGATG CAGCGGGTTCAATTAATATCAGCAATATCTTAACGGGAAAATGCGTGGCTAAAATTAATGCTGCAAATACCTGCACGAAG GTGGACGAGTGCAGCTGCACTGCTTGCAGCTGCAAGCAGACTCATTCATCCCAAATAAGGAGCTCGGTTGCAGAGGCTTT GGAAGACATAACTGCCCTCTTTTATGACGAAGATCGAAACGAGATATACACCGGTAACAGGCATGGTCTTGTTCATGTAT GGTCCAACTGA
CDS sequence (LotjaGi1g1v0461000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAAGGAGGCGCGGTGGTTGGTGTGGTCGGCGCATAGTCGCAACCAGAAGAGGAACTTCCGGCGCCACCGTCAG CAATGGCTTCCGTCTCAACAGCACCACCAGCAACGATGACAGTGTCGTCAAGAAGCTCTTCGGCCGCGAGATTTGTTCCA AGCCTCACCGTGCTTTCGCCGCCACCACCGCTTCTCACAGATTCCGCACCATGCGTTTGACTCAACAGTACGACACTCAC GATCCGAAGGGACCCTCTTCTCCTTCTCCTCTTCTGCCCTTTCTGATGAAGAGGACTAAGGTTGTTGAGATCGTCGCTGC TAAAGATATAGTGTTTGCTCTTGCTCATTCTGGTCTCTGTGCTGCTTTTAGTAGAGGTGAGGAAACAAATGAGAGGATTT GTTTATTGAATGTCTGCCCTGATGAAGTCATCCGCAGCCTCTTCTACAATAAGAACAATGACTCGCTTATTACAGTGTCT GTTTATGCTTCTGAGAGCTTCAGCTCTTTGAAATGCAGATCGACAAGGATTGAATACATACGGAGGGCCAAGCCGGATGC TGGCTTTCCTCTTTTCCAGTCGGAGTCTTTAAAATGGCCTGGATTTGTGGAATTTGATGATGTTAACGGAAAGGTCCTAA CTTACTCTGCACAGGATAGTATATACAAGGTGTTTGATCTTAAAAACTACACCATGCTTTACTCGATTTCAGATAGGAAT GTTCAAGAAATCAAGATCAGTCCAGGCATCATGTTGTTAATCTTCAATAGAACCAGTGGCTATATTCCCCTTAAGATTAT ATCCATTGAAGATGGCACAGTTCTCAAAACATTTAATCATCTACTTCATCGGAATAAGAAGGTGGACTTCATAGAGCAAT TCAATGAAAAGCTTCTTGTCAAGCAAGAAAATGAGAACCTTCAGATACTTGATGTTCGAAATGCTGAGCTAATGGAAGTA AGCAAAACTGAAAACCGAACAGTTGCTGTTTGGAACTTCCGTGGGGAGCTTGTTACTTCATTTGAGGATCACCTGTTATG GCATCCAGACTGCAACACAAATAACATATACATAACAAGTGATCAGGATCTAATCATCTCATACTGCAAGGCTGATTCTG AAGATCAATGGATGGAAGGCAATGCGGGTTCAATTAATATCAGCAATATCTTAACGGGAAAATGCGTGGCTAAAATTAAT GCTGCAAATACCTGCACGAAGGTGGACGAGTGCAGCTGCACTGCTTGCAGCTGCAAGCAGACTCATTCATCCCAAATAAG GAGCTCGGTTGCAGAGGCTTTGGAAGACATAACTGCCCTCTTTTATGACGAAGATCGAAACGAGATATACACCGGTAACA GGCATGGTCTTGTTCATGTATGGTCCAACTGA
Protein sequence (LotjaGi1g1v0461000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGRRRGGWCGRRIVATRRGTSGATVSNGFRLNSTTSNDDSVVKKLFGREICSKPHRAFAATTASHRFRTMRLTQQYDTH DPKGPSSPSPLLPFLMKRTKVVEIVAAKDIVFALAHSGLCAAFSRGEETNERICLLNVCPDEVIRSLFYNKNNDSLITVS VYASESFSSLKCRSTRIEYIRRAKPDAGFPLFQSESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDRN VQEIKISPGIMLLIFNRTSGYIPLKIISIEDGTVLKTFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV SKTENRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSEDQWMEGNAGSINISNILTGKCVAKIN AANTCTKVDECSCTACSCKQTHSSQIRSSVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 463 | 453 | 3.2E-239 | – | |
| PANTHER | 11 | 463 | 453 | 3.2E-239 | – | |
| SUPERFAMILY | 144 | 462 | 319 | 1.7E-12 | – | |
| Gene3D | 207 | 463 | 257 | 1.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0461000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…