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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • SSF69322
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Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Transcriptional regulator STERILE APETALA [Medicago truncatula] gi|357495283|ref|XP_003617930.1| chr0 17251728 17252891 -
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20060674 20069782 -
n.a. Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508728342|gb|EOY20239.1| chr1 29471137 29476941 +
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Cicer arietinum] gi|502132544|ref|XP_004501412.1| chr2 13374815 13376792 +
n.a. Transcriptional regulator STERILE APETALA [Medicago truncatula] gi|357495283|ref|XP_003617930.1| chr2 42316819 42317982 +
n.a. F-box protein [Medicago truncatula] gi|357447429|ref|XP_003593990.1| chr6 5185836 5188245 +
n.a. Acyl-peptide hydrolase-like protein [Medicago truncatula] gi|357459569|ref|XP_003600065.1| chr6 9308849 9315009 +
n.a. Elongator complex protein 1; TAIR: AT5G13680.1 IKI3 family protein; Swiss-Prot: sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1; TrEMBL-Plants: tr|A0A072VSS4|A0A072VSS4_MEDTR Elongator complex protein 1; Found in the gene: LotjaGi1g1v0075200 LjG1.1_chr1 10854588 10874311 -
n.a. Elongator complex protein 1; TAIR: AT5G13680.1 IKI3 family protein; Swiss-Prot: sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1; TrEMBL-Plants: tr|A0A072VSS4|A0A072VSS4_MEDTR Elongator complex protein 1; Found in the gene: LotjaGi1g1v0075200 LjG1.1_chr1 10855048 10860787 -
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A1CNW8|SSH4_ASPCL Protein ssh4; TrEMBL-Plants: tr|A0A151SG68|A0A151SG68_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303400 LjG1.1_chr1 74044956 74051465 -
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A1CNW8|SSH4_ASPCL Protein ssh4; TrEMBL-Plants: tr|A0A151SG68|A0A151SG68_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303400 LjG1.1_chr1 74045123 74051465 -
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A1CNW8|SSH4_ASPCL Protein ssh4; TrEMBL-Plants: tr|V7AS44|V7AS44_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0303400 LjG1.1_chr1 74045561 74048674 -
n.a. Transducin/WD40 repeat protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5T5U3|RHG21_HUMAN Rho GTPase-activating protein 21; TrEMBL-Plants: tr|G7KZ83|G7KZ83_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0461000 LjG1.1_chr1 96515472 96521886 +
n.a. Transducin/WD40 repeat protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|D2CJS7|DNLI_SULZI DNA ligase; TrEMBL-Plants: tr|G7KZ83|G7KZ83_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0461000 LjG1.1_chr1 96515600 96521050 +
n.a. Transducin/WD40 repeat protein; TAIR: AT3G54190.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5T5U3|RHG21_HUMAN Rho GTPase-activating protein 21; TrEMBL-Plants: tr|G7KZ83|G7KZ83_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0461000 LjG1.1_chr1 96515668 96521050 +
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7MV35|K7MV35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579200 LjG1.1_chr1 111875571 111884861 +
n.a. Elongator complex protein 1; TAIR: AT5G13680.1 IKI3 family protein; Swiss-Prot: sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1; TrEMBL-Plants: tr|A0A072VSS4|A0A072VSS4_MEDTR Elongator complex protein 1; Found in the gene: LotjaGi5g1v0355700_LC LjG1.1_chr5 67086426 67091696 +
n.a. Elongator complex protein 1; TAIR: AT5G13680.1 IKI3 family protein; Swiss-Prot: sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1; TrEMBL-Plants: tr|A0A072VSS4|A0A072VSS4_MEDTR Elongator complex protein 1; Found in the gene: LotjaGi5g1v0355700_LC LjG1.1_chr5 67086414 67091900 +
n.a. Dipeptidyl peptidase family member 6; TAIR: AT5G36210.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|V5YMB3|DAPB3_PSEMX Dipeptidyl aminopeptidase BIII; TrEMBL-Plants: tr|A0A0R0IVG1|A0A0R0IVG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0167500 LjG1.1_chr6 45202037 45208998 +
n.a. WD40 repeat-like protein; TAIR: AT5G49430.1 WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein; Swiss-Prot: sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1; TrEMBL-Plants: tr|K7MBB4|K7MBB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0257200 LjG1.1_chr6 56998912 57015533 -