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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0470000 |
| Transcript ID | LotjaGi1g1v0470000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SET domain protein; TAIR: AT1G01920.2 SET domain-containing protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|K7LG80|K7LG80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0470000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98044536..98052762) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAACTCCTTAATTAGGCTTCCTTAATTAAATTTATTATTATTATTATTATTATTGTTATTATTATTATTAATCTATA CTTGAAAAACCCTTTAAACCTTGAACCGCTCCTATCAAAGTCAAGCGCAAACCAAAAATTGAGCTGCTAGCCATGGAAAA CCCAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTGCAGGTTCGTTATCTTCATTTCTAATTTACGGCCCAAAAGCTAA ACATTTCAAACATTTCGTGTTCTTGTTTTTCATTTTGCTTTGAATTTCGATTTGTTATTGATTTCAGACAAATGGGGTGG AGCTACGAGGTTGCAAGATCAAGTACTGTGATTCCAGAAAAGGGTTTGGCATCTTTTCTGATAATGATGTTTCTGATGGT AATATCAATATGAAAATGGAGTTATTGCTTGATAGCATGTAACATTGTTTTTTGCTGTTTTGAACTGGAAAGTATGTAGC TTTATGCAATTTATGTTACTGCATTTTTGTTGTGCAATCTTGGAATTGTGAAAAATCATCCCTTTGAATCAAAAAATTGA GATGTTATGTTTTTGCTTTTTCCAATACAAATCCTTGAAAACGGAAACAAAGTGAAAATAAGGTGGAAATTTTGTAACTA AGTGCTTATATCTCAAATACATTTTTGATTTTACCCTGAATGCTTGTGCCTTATAGCTCTGTAGACCTGTATGTTGACTT TTGGAAACAGATGAAACCATTTTCATTTTTCTGAATGATAGGGGTTCTGGTGGTTGTTCCACTAGACTTAGCAATTACTC CGATGAGGGTGTTGCAAGACCCTCTTTTAGGACCAGAGTGTAGGGCAATGTTTGAAGAAGGAGATGTAGATGACAGGTTA TTAATGATGCTGTTGCTGACTGTGGAGCGTTTGCGTAAGAATTCTCCATGGAAGCCGTATGTATAGTTGTTTGTGTAACT TGTGTTATACTTTATAATTCAGATTATATTTTGAGTTTCACTTTTGGAGTGGTTAAAATTTGAATAGGTACCTTGCTATG CTTCCAACCACTTTTCAAAATACACTTTGGTTTAGTGATGATGAACTTCAAGAGCTAAGAGGAACCACATTATATCGTGC AACTGAATTACAGGTAATTTATCATGGGACTTGGCTTTTTATACCATAAATCAATTTGATTTAAACTGTTTTTGAGTAAT AATAGTCAATATGAATTAGTTGTCTGCAGTATATTTTGGGCAATTGCTTGAATGAGAGCATGCACTAGATACGAAATGAA AATTACATATAAGCCAAACCTAGTTTTTTTAATATGATCACCAATAAGTATTAGAGATATATTTCCTTTTTGGCTGATTC GACCTGTGAGGTGAATCTGTTTAGTTTGTTTAATAAGGTCTGAGATAGAATTACATGTCAACTATGCTATTTTCTTCAGT CATCTTAACTTATAGTTTATTTCATAACTGTTTTGTCTTGCAGAAGAAAAGCCTGCTGTCATTGTATGAAACTAAAGTGA AGGATGTAGTCAAGAAGCTTTTGGCTCTTGATGGAGATTCAGAGATGTATGTATGGAGTAAAATTGTCTTTTTACTGAGT TGTTTATTTTTTGTAGTGGTATATTCGTGGTTGACAAGTCTTGACACCTGTTGAAATCTTGACATCTTGTAGTTTTGAGT TAGTTAATGTCAGTTATATGTCGATGATATTTATTTTGTTTCGGGATTGAGAACTACAGTTTTGAAAGTATAATCTACTA GTTACCAGTTTACTGCTTCACCTTATATGGAAATATGAAACCAGTATACAATTAACAACAAAATGTGGATGTGCTACACT ATGTTAAATGTGCACCTACTTGTCTTCATAAATCATGTTCAAGATGTTTTACTTTTACTCAGATGTGAGTCATCTGATTT AGAATGAGATGTGAACCATAGGATTCATGCAACATGGGTAAACTAAAGGAATGCTTGGGGTGTAATTTGTAATGAAAAGT ATGACTTAAGCTTGTAGAATTTTTTTGCTACACAACTATAAGACCAGACCTGTAGAAGAACCAGTAAGGAGCGTAAGGGA GATGGCGAATAACTGAGTAGTTAGAGATTGAGAGAGACCAAGAAAAAAAGTCAGGCAAACCATTAAGAAAGGTTTGGATA TAAATGGTTTGTTTCTACACATGATTCATGATAGGATGTTATGTTATCATTTGATTCATGTAGCCAACCCCTTGTTATGC TTGTGTGTCATTTGGTCATTGAAGTGCTATGATAATTGATGTGTCTTTCTGAAGAATGCTAAGATATAGTCCATTTCATG TTAGAAAAATGCATAGGTTATAGGATCACATTCAGGTTACTTTCTTTTCATTTGGTTATAGTCTTATGTTGTAAGTACAA GATTGTTGAATTTGAAATGTATTTTATACAATGTAATTTACACCCTTACATTTCTGTTTACCCTAAATTTATTAGCAATA AATATGACTTATTTCTTCATTGGATGAATTGAAATGTACTCTCTAGATTTTACTTTCAAACAGCCATTTCTTTGCTAAAC TTTAGACATTTACATTTCATCTTTTCTGTCTGACCTTTTTTTTTCTTTTTCAGTGAGTCGTGCTTTGAAGATTTCCTTTG GTATGTACTTCTAGTGAACTTTTATATGACTTAAACTAAGTCCTTGGAGGTTGATAGCAGACTTGCCTTGATGCTAGGGC AAATTCAGTATTTTGGAGCCGGGCTTTGAACCTCCCTTTGCCTCGTTCTTATGTATTTCCAGAAATGCAAGAAGTTCAAG AGAGTTGCATTCTAGAAGCTGATGAAAAAAGTAACTTCATCTCTTTTTTCCTATCTAAGTAGTTTCCTATAAGAATTTTC TCTTCCTTGTGTGTCTAATTGAGAGGTGAGGTCATCATTTAAAATTTTTCTGAGTTTAAGAGTTAAAAGTAATATTAAAA TAGGGAAGTGTTTTTTTTCAGTAAGCCAGGATAAAAAACAGGACAATCTAACCAAGGAAATTACATGTAACACAGTGCAA GGAGACACTGTATGGGTTGAAGGTCTTGTCCCTGGCATTGACTTCTGCAACCATGGTAACTTGTTGCTTGACATTCACTT TGCTATTTTTTTAAGTACTTTCCTTTTCCTTTATTCATTTATTGGGATCTGGTTGTTTCCCCGTTAGTTGTTGTTTGATA TGAAACTCAGTCTAAGTGCTTCACCTAATAAAATTTAGTCAAATAATTTCTTGACATGGTAGCAAAGTCTCGATGATCAA GTGACCAATATTTCAGCTTTCCCCTTTCTGATAAAATTTGGTACAAACTACAAAGCAATTGTTGCACTTCAAACCCCAAC GAGTGAAGAACTGTTGTGTGGGAGGGAATAATATATATCTTGAACATTTCTGTAAATTTATTGATAGGGGATATATTACC TTTATGATATGCCAGTTGCTGTTTGTCTTGACTCTCGTGATGTTAAAGGGGTATTCTCTTTTGCATAATAACACTTATCA AAGTGGTATTCTTTTGTTTTCATAGTGACAGTGCCATGTGGTACTGCTGTACTGGTATCATATATAAACTAAGTCATAAA TCCAGATGCAAGGTTCACAAGTGATAGGAAATATCTATTATTGCTTTGAGAAATGAAAAGTTAATGAACTATTTATATGC ATATTAATGTGTGCTTGGCTTAGTTCCAGGGTGAGTTTTGGCTTATATGGTAGATATATCAAATACCTCATGCTAATATA GTAATTTACCTTAATTACATGGCCAATCAGATCTGAAGCCAAAAGCGACATGGGAAGTTGATGGAACTGGTTTAACAACA GGAGTTCCTTTCTCCATGTATCTCATTTCCGGTAACATTCTTTTCGTGGCTTTTCAGTGTCCTTGTTAACGACCAATAAA GTTATTTCCTTTTATGTACCTCTGCAGTTCTAATAGTTACTGTCATATCTCTAACATAATTTCCTTTTATTTTTCTCTTT CATTTAAGCATTTTTGTAATATTGTATGTCGTAAAACTATTCCTGTCTAATTAATATTTTTTTTATTGCAAAGCTGCTCA AAGTCCCTTGCAGACTGATCAAGAAATTTCCATTAGTTATGGCACCAAGGGAAATGAGGTACTTTATATTGTGTTATGAT TGGAAAGAAAATGAAAAAATATAACCAAATTCCTTTATTCTTTTATACTCTAGAGTTTACTTTTCTCCCTCTTCTTTATC AAGCACTAATCTTTTTATGTGCATGCAGACACATGGGGGAAATAAGGTTTGTCATAGGAATTTTTCATGTGGCTAATACT GGTGCAATGTTTTGTTGGCAGTTTATTCAATATGAGTATATGACTAAAAGAAGGTTTAATAACCATATACATAACTATTG TTCGATAAATGCAAATCTAGACATTGCACCATTGACTTGGCCTTTTGGCTTAGTTGAGTTTCTCATGAACCAACTATCCA AAAAGTTGAAGTTGTTGGGTGAAGACACCTTATTGGTTTTATATTATATTTCTAACATGTTCCTTCATGCAAGAGCCCAT TGGCCTTAATTTGGTGGACGGCCATGGTACAAGCTTCATAACCAAGGCCAATTGTCTCTTGCGTAGACAATGCACGCCTT TTTATTAAAATAATAGAGTCAACAAAGATTGAACTCTAGAACACTTAGTCATAGAGCCTCCAATGTCATGTCATGAACCA ACTATCCCAAAAACCTAAGTTGTTGGTTGAAGAGTGAACTGAAGACACATAAATGATTTTATATTTTATTCCTAACAGAG TTCACATCTACCATTATGAAACATTTAAAGTTTTGAATATATACTTTCATATATATATTTACTAAATGTGAGTAAAAGTC AGTAAATGGAGCTTCTATTCTGTTGAAGGCTATTTGAATCTTATTTCAAGTACTACATGGTTTCCATATTTTTCAACTTG ATGCAGGAACTTCTATATCTGTACGGTTTTGTCATTGATGGTAACACAGATGACTATCTCATGGTAATGACTTACTCTTG TATTCAGTTTCTACTTTATTGAAGATTTATGTTGTTTATCACTTGATCTTTAGAACTATGCCCCCAATGTTTGTTGCTAT TTGGCAGCTTTCATTTACCAGAAGTCTTACTAAAAATCTTTAATATTAATAATATCCAACTGTTCTTTATCCATTTCCTT GCAATAGTAGTACAATTAGTTTTGGTTTGCAACTACAGTAGCATTTCATACTTTGACCATACTTTCTTAATTTTGCCCAT GGCTGCTGCCATTTTGCTTCAGTTACTGTCTCTATATCATGGGCTGTTTAGCACGGTTCATACAGTTATAGACATGGCTT ACTAATCCGTGTTGTTGGGCTGTTCAGGTCCACTATCCAACAGAAGCAATTAGTACTATTTCTTTTTCAGAAGCCAAAAG CCAGCTTCTTGAAGTGCAGGTATGGTAATAATATATGTTAACCTTTAAGCCATTTTTTTAAGAAGTAGAATATGATTTAT CTCTCCAACTTTGTACTACCTATTTTCTAAAATTCCCCCCTTGTGTAACTTCACTTTATTTTTGTGTTTACAGAATGCTG AAATGAGATGTCTTTTACCCAAAGCTTTGCTGGAGCATGGATTTTTTCCATTAGGCACACGAAACAGTGGAGAAAATAAC AAGTCCAACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAAATGCCATCTTATGTAAACAAGCTGGTTTTTCCTGA GAAGTTTATAGCCACCTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGGTAA AGTTTCTATGCAGCATTTTATTTTTCATATTTCCCTTGGATGTCAGACTTAGCTCCTGCCCTGACTATTGAAACTGTGTT TTCTTTTGCTTTGGTAAATTTTCTATCAAGATTTGCCACATTTCCTACCCTTTGCATCGCTTAACTAGGACAAGTGATGT GACTCTGCTACTTGATATGTAGTTCCATGCTTCATGGGGACAGCATCTGGGAATTGTATGATACATTTATGATTTATCTT TTATAGGCAAAACAGACCTTACCTCTTTTACATTGGAATTTCCCAATACTTGGAAGAAATTAATAATTCAAACATAAAAG AATAAATGGAACCACTAATTGTAAATTGGTGCTGAACATAGTACAACAACAAAAGCTTTATTCAACTAAGTGAGGTCGGC TATATAGTAAATTGGTGCTGAACATAGTACATGATTTTTACAATGCATATAAGGTCATTTACATTTCTTTCCTTTAATTT CCTTTGATTGCTGGCCGATTTTAAGCTGGGATAAAATGAAGTTAATTTATTACATCTAGCCAAGACCAATAGAAAAGTAC TAAGCATTATATTAATTTGAATTTTTTATTTTCAATTTCCTCTGATTTCAAACTTCATAAAAATTTTATGCTTTCTATTA AGCTTGCTGGACCTGAAAGGGAGAGACAACCGTCTGATACAGATGTCCAATCAGCAATATGGGAGGTGTGCGGCGATTCC GGAGCCTTACAATTGCTTGTTGATCTTCTTCATGTAAAGTGAGTCCCAGGAATTACACAGACACCATAATTGTGGATAGG ATCATGTTAATCACAACCTGAAATATTTTTAGTACTTTACTCAAGTGCATGCATTGCAACTTTTTTCCTGGAAATGATGT TAAATTTTTTCTTTTTTATCTCCAATGTGCCATTTCATTTATGGAGCAAATAAGGACACATACTAGAACACCAACATTGA TATATCTTATGTACAATGCCTAATTAACTTCACTCCATTCAAGGTTGATGGATCTTGAAGAGAGTTCTGGAACAGAAGAA AGTGACCATGATTTACTCAAGAAAGCCCTTATTATTGATAGCCAGGATGATAGCAAACAGTGCACGAGCAATTTAAGGTA AAAACTTGTGTACTTGATCTCAGTAATCATAATCATATACCTTAGATTATTGGAGACCGCTCTGGTACTTATCTTTTATC AAGCGTACTGGTACTTGATTTACAACTTATGGTGACACTGCTAAATCTTCTTTTATGAATCAAATCACTTTTGAAATCCA TGCTTTTATAATTCTTCCATGTTTAACATTTTTGGTTGCATACAAGTCTAGGATTGTTGAGTGTGAACTGTGAAGTGAGT GTGTATCTTACCCCTCCCTGGATTTAAGATGCTAAACTCCTGTGATTCATAATTTTCTTAGTCTGACAGTGTACCATCTT TCTATTATAAATGTCAAATTGTGAAGTGTTTGTTGATTGAAAAGATTTGCAAAGTATCTAAAATTATCTCATCAGCCAAA GAAAGCTTGCATTCCTCACCTGATTTATAATTTTCCTACTGATTTTTTTTGTCTTTCAGACCTAGCACAATAATGTCAGA TGATCCATATAGCCAACTTCACTTAGTTGGATAAGGATTTTGTTGTATTCTTTGTCTTTCTAATAGTTATTTTCCACAAA ATTTCAGCACATTTGCAAATGACTCAGAAGAATCAAAGTTGATGATGACTAGAAACAAATGGTCAGCTATAGTGTACCGG CAAGGCCAGAAGGAGCTAACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGGAGTTATCACAAAACGAAGAGGTGAA TGCTCCTTGATGAGTGATAACCATATCAAACTGTATAGTGTTCTTCTTGTTCCCTGATTAACCAATAATTGGAGTAAACT ACTCTCATATTCGTCTGAGAAATAGAGTAGTAGGACACATTAGTCCCGGTAATGCCAAATGATTATCGGAAGTGTTATTT AGCCTGTTTTTCTATTTTTTGTATGCCCTTAAAAGATATGGGTGAACAAGTCAGACATGAGGATTTCATGAAAAACGTTC TTATTTTAAGTTGCATTTGTATGAGAGAATTTATATACCTTAGGAAAAAATGTTATTTTTCAGTTTTTTGACAGTTGAGT TTAAATGTTCTTTATTCTTCATTTTCCAAACCTTTCAACCGTGAGAGGTAATGACATGTATTTAGTTTTTTAAATTCTAC ATTTAGAAAACTTTTCGTACACCACAACCCGGGTGGTGTACTCAACTTTAATCTTGTCCTGAAGAAAAATCTGTACCTTC AATGCATATGATGGGTATGGCCATTTCATCAGCATGAAGGTTCAGGGCTTTGTGGTGGTTATGCCAG
CDS sequence (LotjaGi1g1v0470000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACCCAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTGCAGACAAATGGGGTGGAGCTACGAGGTTGCAAGAT CAAGTACTGTGATTCCAGAAAAGGGTTTGGCATCTTTTCTGATAATGATGTTTCTGATGGGGTTCTGGTGGTTGTTCCAC TAGACTTAGCAATTACTCCGATGAGGGTGTTGCAAGACCCTCTTTTAGGACCAGAGTGTAGGGCAATGTTTGAAGAAGGA GATGTAGATGACAGGTTATTAATGATGCTGTTGCTGACTGTGGAGCGTTTGCGTAAGAATTCTCCATGGAAGCCGTACCT TGCTATGCTTCCAACCACTTTTCAAAATACACTTTGGTTTAGTGATGATGAACTTCAAGAGCTAAGAGGAACCACATTAT ATCGTGCAACTGAATTACAGAAGAAAAGCCTGCTGTCATTGTATGAAACTAAAGTGAAGGATGTAGTCAAGAAGCTTTTG GCTCTTGATGGAGATTCAGAGATTGAGTCGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGCCGGGCTTT GAACCTCCCTTTGCCTCGTTCTTATGTATTTCCAGAAATGCAAGAAGTTCAAGAGAGTTGCATTCTAGAAGCTGATGAAA AAATAAGCCAGGATAAAAAACAGGACAATCTAACCAAGGAAATTACATGTAACACAGTGCAAGGAGACACTGTATGGGTT GAAGGTCTTGTCCCTGGCATTGACTTCTGCAACCATGATCTGAAGCCAAAAGCGACATGGGAAGTTGATGGAACTGGTTT AACAACAGGAGTTCCTTTCTCCATGTATCTCATTTCCGCTGCTCAAAGTCCCTTGCAGACTGATCAAGAAATTTCCATTA GTTATGGCACCAAGGGAAATGAGGAACTTCTATATCTGTACGGTTTTGTCATTGATGGTAACACAGATGACTATCTCATG GTCCACTATCCAACAGAAGCAATTAGTACTATTTCTTTTTCAGAAGCCAAAAGCCAGCTTCTTGAAGTGCAGAATGCTGA AATGAGATGTCTTTTACCCAAAGCTTTGCTGGAGCATGGATTTTTTCCATTAGGCACACGAAACAGTGGAGAAAATAACA AGTCCAACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAAATGCCATCTTATGTAAACAAGCTGGTTTTTCCTGAG AAGTTTATAGCCACCTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGC TGGACCTGAAAGGGAGAGACAACCGTCTGATACAGATGTCCAATCAGCAATATGGGAGGTGTGCGGCGATTCCGGAGCCT TACAATTGCTTGTTGATCTTCTTCATGTAAAGTTGATGGATCTTGAAGAGAGTTCTGGAACAGAAGAAAGTGACCATGAT TTACTCAAGAAAGCCCTTATTATTGATAGCCAGGATGATAGCAAACAGTGCACGAGCAATTTAAGCACATTTGCAAATGA CTCAGAAGAATCAAAGTTGATGATGACTAGAAACAAATGGTCAGCTATAGTGTACCGGCAAGGCCAGAAGGAGCTAACTC GATTATTCTTGAAAGAAGCAGAACATGCTCTGGAGTTATCACAAAACGAAGAGGTGAATGCTCCTTGA
Protein sequence (LotjaGi1g1v0470000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENPEAKLETFMQWLQTNGVELRGCKIKYCDSRKGFGIFSDNDVSDGVLVVVPLDLAITPMRVLQDPLLGPECRAMFEEG DVDDRLLMMLLLTVERLRKNSPWKPYLAMLPTTFQNTLWFSDDELQELRGTTLYRATELQKKSLLSLYETKVKDVVKKLL ALDGDSEIESCFEDFLWANSVFWSRALNLPLPRSYVFPEMQEVQESCILEADEKISQDKKQDNLTKEITCNTVQGDTVWV EGLVPGIDFCNHDLKPKATWEVDGTGLTTGVPFSMYLISAAQSPLQTDQEISISYGTKGNEELLYLYGFVIDGNTDDYLM VHYPTEAISTISFSEAKSQLLEVQNAEMRCLLPKALLEHGFFPLGTRNSGENNKSNQVCNYSWSGQRKMPSYVNKLVFPE KFIATLRTIAMQEDELFKVSSMLEELAGPERERQPSDTDVQSAIWEVCGDSGALQLLVDLLHVKLMDLEESSGTEESDHD LLKKALIIDSQDDSKQCTSNLSTFANDSEESKLMMTRNKWSAIVYRQGQKELTRLFLKEAEHALELSQNEEVNAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 551 | 548 | 6.6E-252 | – | |
| PANTHER | 4 | 551 | 548 | 6.6E-252 | – | |
| Gene3D | 5 | 310 | 306 | 4.6E-54 | – | |
| SUPERFAMILY | 7 | 314 | 308 | 8.5E-50 | – | |
| ProSiteProfiles | 25 | 296 | 272 | 8.784 | ||
| Pfam | 35 | 296 | 262 | 4.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0470000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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