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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0479500 |
| Transcript ID | LotjaGi1g1v0479500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Quinoprotein amine dehydrogenase, beta chain-like / RIC1-like guanyl-nucleotide exchange factor; TAIR: AT3G61480.2 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; Swiss-Prot: sp|Q9V3C5|RIC1_DROME Guanine nucleotide exchange factor subunit Rich; TrEMBL-Plants: tr|Q2HUD0|Q2HUD0_MEDTR RIC1-like protein; Found in the gene: LotjaGi1g1v0479500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99160521..99161415) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGTTTGTGGTCTTAACAGTGTTTTTGGATTTTCTGTTGGTTCAGCATAGAGTGAGATTGGGGAAGTACAAGAGAGA TTCAGATTCATTGCAGAGGGAAGGAGAAAACTTGCAGGCCGTGTGGAGCCCTGATGCCAAATTAATTGCTATTCTTGTAA GTTTGCTAGCTTGTTGGTATGTGATTATCAGTGTGATTTATGAAATGGACAACCAATTTTTTATACATTCCAGCTCTCTG TTACATCTTTAATTTGCTTCGTGAACTGTTTGATTATTCTTTAAGTTGTACACATGTTTCGTTACCTGTTTTTTGTTGTA AAAAATTGAACGTTGGTTATAAATTTTGTAGGCTGCATGCAAATGAAATACTATTATTCATGTTAGCAAGCGGGCACTGA AATTTTCTGATTAGTAGTGGGCTATGTTGTGAGATGAGACCCATTTTGATTAGATTAGATTTATTGGATTCAGATCAGCT TGTATTCGAACTCAGGACAATTGGAACTTGTTACTTGCATATTTTCTAGCTTTACCGTGATATCAGTTTATTCCTATTCA TATCCTATTTTTAAGGCATTCTAACATCAATTTCATCTCATGCCTTTATTTTGTTCACACTGCTAAGAATTCATTTCTTA CAATTAATATTGCGTTTTAAGTATCTTATTTCATTCCTGTCATCCTGTGAGCGACAAATTGCTGGTTATGTTCCTGATTC CTCTGGATTTCTCTGTTTGCAGACATCTTCTTTCTATCTTCACATTTTCAAGGTCCAATTCTTGGATAAAAGAATACACA TTGGTGGGAAACAACCCTCTGCTTTGTGCCTAGCTACTATATCTCTTCTGCTTTCTGAGCAAGTTCCTTTTGCAGTGAAG AATTTGTCCGTGTAG
CDS sequence (LotjaGi1g1v0479500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTTGTGGTCTTAACAGTGTTTTTGGATTTTCTGTTGGTTCAGCATAGAGTGAGATTGGGGAAGTACAAGAGAGA TTCAGATTCATTGCAGAGGGAAGGAGAAAACTTGCAGGCCGTGTGGAGCCCTGATGCCAAATTAATTGCTATTCTTACAT CTTCTTTCTATCTTCACATTTTCAAGGTCCAATTCTTGGATAAAAGAATACACATTGGTGGGAAACAACCCTCTGCTTTG TGCCTAGCTACTATATCTCTTCTGCTTTCTGAGCAAGTTCCTTTTGCAGTGAAGAATTTGTCCGTGTAG
Protein sequence (LotjaGi1g1v0479500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFVVLTVFLDFLLVQHRVRLGKYKRDSDSLQREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKRIHIGGKQPSAL CLATISLLLSEQVPFAVKNLSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 21 | 7 | - | – | |
| PANTHER | 15 | 95 | 81 | 1.3E-14 | ||
| Phobius | 22 | 102 | 81 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | RIC1-RGP1 guanyl-nucleotide exchange factor complex | A protein complex that acts as a nucleotide exchange factor for the GTPase Ypt6p, and is required for fusion of endosome-derived vesicles with the Golgi. |
Expression pattern of LotjaGi1g1v0479500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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