Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0558100.1

Overview

Field Value
Gene ID LotjaGi1g1v0558100
Transcript ID LotjaGi1g1v0558100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|A8JID5|CF157_CHLRE Cilia- and flagella-associated protein 157; TrEMBL-Plants: tr|A0A072VRU0|A0A072VRU0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi1g1v0558100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:109042404..109045558) extracted from Lotus japonicus Gifu genome v1.2.

AAACATTGTCATTATGGAATTTCATCTGGTCAAACGAAACAGTACCGGATGGAGAAGTCAATAAATGGACATTTCTCTTC CTCTCTTTCTCATTCGTTCATATTCAATCCTTTGCTTGCTGCCTCCTTTGCTCTATATATCTTGCATTCCCTTCTGCATT GAACCTATATAAATACCACACACTTCAACCTCATATATATTGGATTTTTAGTTTTGTTGTTGATGATGGCGGCTTCCAAC GGAACAGCAAGTAACCCCAACTGTCCTCATGCTTCTAATCCGTACCATCAATGCACCCAAGCTTGCTCCAAAAAGACCAG CCACCGAACCAAACCACACGCTAAGAACACTTCTTCATCAGGTTAGCTATATAGTTAGTTACTTGTTCTTTCTTCTGTTT CTGTCCATAGATAGATATAAATATATACTAATCTGTGATACATATATTTCCTTGATTTAAGGTTATCAACGGAGCGCAAC AGATGGTGAGCCCGGCAGCAAAAACACAAACAGAACACACTCAGGTTGTCCTAAAGCATCTAATCCTTACCATCACTGTG ATCACAATTGTTTAACCGCTTCAGGTTCACTTAATCACCTCCACCTTTAATTAATATGATCTAGATCTGTAACAATTTTC TTCTTTTTTATTTGTCTTGTTAGCATCTAATCCTTTATATGATCTCATCTATTTTCACATAAACAGAATCATCTAAAATA TAGTTGGTGAGTTTTTGAAGAATGAGATCCAGAAATTTTATAATATACTGTTTAATTTCAATCTCAGTGCTTTGTCAATG CTTTCATTTAAAACATGTCGTATATACACCAACAATATAATTCTGTTTTAAATTATACCAGTATGGAATTTTTTAGTACA ACTATTGGTTTTTGAAATGGGAACGAGAAGAATAAAGTTGGGAATCTTCGGATATTAGTCAACCATTTGGGTTCATTCAT AGGATAGCCATTTTGTTGACCATTTCTTGTAATGGGTTAGTTTAATTTATTTGACAAAACTTCTCACTGCGTTTTCTGTG CATCAATACATTCATACTAATTCTATTACTATCAGAGAAAAATATTGTAAATGGTTTAATCAGTTCATGATTCTCCTGCG TGCATCTGTTTAAAATTTTGATTGATATTACTTGTCCTCTATTTTCCTCACTTCCTTGATCTCTTCTGTATTGTTCCATG TTCCTTCAGTGAAATATATGTAGTTTTTTACCATGAGACAAATTGATAGCGAGCCTTTTTGTTAAGTATTCTTACCATTT GTCGTTAATATAACTGATGAACGGGTCAGTGATAAAGATCTTTTGCACTCCATGAATAAATATATATGTTTCTGAGTCAA ATCCATTCTTATTGCAGGTGCCGCGCCTCCTCCTTCAAATTTTGACAGGAGAAAGAAGCCAGGTTCTAGGCCAGAACCCC CTGTTGTTGCCGGCGCTGTTCCAGCCGCAAAAGTTGAAGCGATTCAGAAGTCTAATGCTTCATCACCAATATCAAATCAT TCTGAGATAAAAAAGGTGGAGTCAAGAAACGATGATCACAATCATTCTGTACCAGTTTCTGGACAAATACATGTCCCACT CCCAGTCCCTGATGTTAAGGTAGTGGCCTCTTCTACTCTCAAGCTCTAGTTTCTACAGCCCTTTTAGTGGGTGTTTGGAT CACAATTGATAAATTGACTTTAGTAAAATTGATTATGGTAAAAGTGAATTGAAGATAGTTGAAGTGAAGTGAAATGATTT ATATTTGGATACAATTATTGAAAATAGTGATTTGTGTAGGGTAATGTTGTAAAATCTAGAGGCAAACTATCACAATCGAT TATATTCAATTCAAAAACTACTCTCCAAAATGACTCTAAGACATCTATATTTCTGTTGCAATCTATAATTAACTTTACCC TTTCAGAATTGATTTTGTGGTCCTCCAATGAGGAGCCAAACACACGCCAAAATCCTTGGCTTTATACAAAACTAATGTTA AGCACATATGTAATTATTTGTGTATCTTTTTGTAGCATGTCCATGAAGAAGACCAACAAAAAAATGGTGTAGAGCACCTT GCCAATCCAATTCAAACAAAACAAGAGGACAAAACTGCTTCTGATGTCCACCCTGGAGAAGGTCTTGCTACTACTTTCAA AGGTGGATCCATAGATTTTAGTTTCTCTGGTATTATTCCACAGGGCAATGAAGATAATGATGATAAAGGAGATACAGAGT CTGTGGTATCCGAGTCCCGTGTTCCGGTAGGAAAGTACCATGTAAAAGAAAGTTTTGCTTCCATCTTGGAATCTATCCTT GACAAGTATGGAGACATAGGAGCGAGCTGTCATTTGGAATCACTTGTCTTGCGCTCATACTACATTGAGTGTGTTTGCTT TGTGGTCCAAGAGTTACAATCAGACTCAATAATGCACTTAACTAAGTCCAAAATCAATGAACTAGTGGCCATTCTGAAGG ATGTTGAGTCTGCTCAACTTCGCGTGGCGTGGTTGCGTAGCGCACTGGATGAAATAGCTGAAAATGTTGAAGTGATTAAC CAGCACCAGGAGGTGGATGCTGCAAAGGCCAACACTGATCGCGAAATGGAATCACTGAGGGAACAGCTAGAATCAGAAAT GGAAAGTTTGGCTGAGAAAGAACAAGAGGTTGCTGATATTAAAAAACGAATTCCAGAGATAAGCGATCGGTTGAAGGAGC TAGAGCTAAAGTCTGCTGAACTGGAGCAAAGCATGCTGTCTAGCAAGTCTGAGGTTGAAAATTTGCATCGCAAATCCTTG ATAGATGAGCTGTTGTAATATTGTTAATGTATCTGCTTATATAGCAAATTTGACTCTAAACTGCACACATATATGTTACT TTCTTAGCTAGGTCTCAGAAAGTAGAATAGGTTACTGAATAAATGGATGCGAGTAATATTTATTTGTAATAGATTACTAA ATCAGATGGAATTTTCTATCTCAGTATACAAATTATACACATACATGATACATGTGAGTTTTATGCATAATTTTTTGGTT TATTCAGAAATGGGAATGCATAGCGTTTCACAAGTAGTCATGTGACCATTTATTAACGTTTAATTTTAGCTATTTTTGTA TGAATGTAAGAACAATATTTTATGCTATAATTTTT 

CDS sequence (LotjaGi1g1v0558100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGCGGCTTCCAACGGAACAGCAAGTAACCCCAACTGTCCTCATGCTTCTAATCCGTACCATCAATGCACCCAAGC TTGCTCCAAAAAGACCAGCCACCGAACCAAACCACACGCTAAGAACACTTCTTCATCAGGTTATCAACGGAGCGCAACAG ATGGTGAGCCCGGCAGCAAAAACACAAACAGAACACACTCAGGTTGTCCTAAAGCATCTAATCCTTACCATCACTGTGAT CACAATTGTTTAACCGCTTCAGGTGCCGCGCCTCCTCCTTCAAATTTTGACAGGAGAAAGAAGCCAGGTTCTAGGCCAGA ACCCCCTGTTGTTGCCGGCGCTGTTCCAGCCGCAAAAGTTGAAGCGATTCAGAAGTCTAATGCTTCATCACCAATATCAA ATCATTCTGAGATAAAAAAGGTGGAGTCAAGAAACGATGATCACAATCATTCTGTACCAGTTTCTGGACAAATACATGTC CCACTCCCAGTCCCTGATGTTAAGCATGTCCATGAAGAAGACCAACAAAAAAATGGTGTAGAGCACCTTGCCAATCCAAT TCAAACAAAACAAGAGGACAAAACTGCTTCTGATGTCCACCCTGGAGAAGGTCTTGCTACTACTTTCAAAGGTGGATCCA TAGATTTTAGTTTCTCTGGTATTATTCCACAGGGCAATGAAGATAATGATGATAAAGGAGATACAGAGTCTGTGGTATCC GAGTCCCGTGTTCCGGTAGGAAAGTACCATGTAAAAGAAAGTTTTGCTTCCATCTTGGAATCTATCCTTGACAAGTATGG AGACATAGGAGCGAGCTGTCATTTGGAATCACTTGTCTTGCGCTCATACTACATTGAGTGTGTTTGCTTTGTGGTCCAAG AGTTACAATCAGACTCAATAATGCACTTAACTAAGTCCAAAATCAATGAACTAGTGGCCATTCTGAAGGATGTTGAGTCT GCTCAACTTCGCGTGGCGTGGTTGCGTAGCGCACTGGATGAAATAGCTGAAAATGTTGAAGTGATTAACCAGCACCAGGA GGTGGATGCTGCAAAGGCCAACACTGATCGCGAAATGGAATCACTGAGGGAACAGCTAGAATCAGAAATGGAAAGTTTGG CTGAGAAAGAACAAGAGGTTGCTGATATTAAAAAACGAATTCCAGAGATAAGCGATCGGTTGAAGGAGCTAGAGCTAAAG TCTGCTGAACTGGAGCAAAGCATGCTGTCTAGCAAGTCTGAGGTTGAAAATTTGCATCGCAAATCCTTGATAGATGAGCT GTTGTAA 

Protein sequence (LotjaGi1g1v0558100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMAASNGTASNPNCPHASNPYHQCTQACSKKTSHRTKPHAKNTSSSGYQRSATDGEPGSKNTNRTHSGCPKASNPYHHCD HNCLTASGAAPPPSNFDRRKKPGSRPEPPVVAGAVPAAKVEAIQKSNASSPISNHSEIKKVESRNDDHNHSVPVSGQIHV PLPVPDVKHVHEEDQQKNGVEHLANPIQTKQEDKTASDVHPGEGLATTFKGGSIDFSFSGIIPQGNEDNDDKGDTESVVS ESRVPVGKYHVKESFASILESILDKYGDIGASCHLESLVLRSYYIECVCFVVQELQSDSIMHLTKSKINELVAILKDVES AQLRVAWLRSALDEIAENVEVINQHQEVDAAKANTDREMESLREQLESEMESLAEKEQEVADIKKRIPEISDRLKELELK SAELEQSMLSSKSEVENLHRKSLIDELL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 10 428 419 4.7E-122
PANTHER 10 428 419 4.7E-122
MobiDBLite 27 69 43 -
MobiDBLite 39 69 31 -
MobiDBLite 86 111 26 -
MobiDBLite 220 239 20 -
Pfam 224 425 202 5.7E-58
Coils 345 414 70 -
MobiDBLite 408 428 21 -
MobiDBLite 414 428 15 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0558100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…