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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007942
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.079s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0342659.1
n.a. Phospholipase like protein [Medicago truncatula] gi|357519481|ref|XP_003630029.1| chr0 179652563 179654891 -
2 domain predictions
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Lj1g3v3330510.1
n.a. phospholipase-like protein (PEARLI 4) family [Arabidopsis thaliana] gi|18398247|ref|NP_565397.1| chr1 38140252 38143384 +
2 domain predictions
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Lj1g3v3330510.2
n.a. phospholipase-like protein (PEARLI 4) family [Arabidopsis thaliana] gi|18398247|ref|NP_565397.1| chr1 38140252 38143384 +
2 domain predictions
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Lj1g3v3330510.3
n.a. phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|145334227|ref|NP_001078494.1| chr1 38141219 38143384 +
2 domain predictions
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Lj3g3v0115910.1
n.a. Phospholipase like protein [Medicago truncatula] gi|357519481|ref|XP_003630029.1| chr3 828624 831136 +
2 domain predictions
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Lj4g3v2716950.1
n.a. Phospholipase like protein [Medicago truncatula] gi|357519481|ref|XP_003630029.1| chr4 36499100 36501995 -
2 domain predictions
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Lj4g3v2716960.1
n.a. Phospholipase like protein [Medicago truncatula] gi|357519481|ref|XP_003630029.1| chr4 36503613 36504386 -
2 domain predictions
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Lj4g3v2716970.1
n.a. PEARLI 4 protein [Medicago truncatula] gi|357519479|ref|XP_003630028.1| chr4 36507679 36511062 -
2 domain predictions
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Lj5g3v2244560.1
n.a. At2g16900/F12A24.8 [Arabidopsis lyrata subsp]. lyrata] gi|297836406|ref|XP_002886085.1| chr5 32494859 32498760 -
2 domain predictions
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Lj5g3v2244560.2
n.a. phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|15236270|ref|NP_195237.1| chr5 32494859 32498760 -
2 domain predictions
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LotjaGi1g1v0558100.1
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|A8JID5|CF157_CHLRE Cilia- and flagella-associated protein 157; TrEMBL-Plants: tr|A0A072VRU0|A0A072VRU0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi1g1v0558100 LjG1.1_chr1 109042404 109045558 +
2 domain predictions
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LotjaGi1g1v0558100.2
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc; TrEMBL-Plants: tr|A0A1J7G6Z8|A0A1J7G6Z8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0558100 LjG1.1_chr1 109042404 109045558 +
2 domain predictions
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LotjaGi1g1v0671700.1
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G20960.3 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2I0|MCC25_ARATH MATH domain and coiled-coil domain-containing protein At3g58360; TrEMBL-Plants: tr|G7L9N1|G7L9N1_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi1g1v0671700 LjG1.1_chr1 123575011 123577738 +
2 domain predictions
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LotjaGi4g1v0390800.1
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|P0DKG4|MCC07_ARATH MATH domain and coiled-coil domain-containing protein At2g42465; TrEMBL-Plants: tr|G7L9N1|G7L9N1_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi4g1v0390800 LjG1.1_chr4 76946510 76949281 -
2 domain predictions
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LotjaGi4g1v0390800.2
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|P0DKG4|MCC07_ARATH MATH domain and coiled-coil domain-containing protein At2g42465; TrEMBL-Plants: tr|G7L9N1|G7L9N1_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi4g1v0390800 LjG1.1_chr4 76946530 76948078 -
2 domain predictions
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LotjaGi4g1v0390900_LC.1
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2J2|MCC18_ARATH MATH domain and coiled-coil domain-containing protein At3g58240; TrEMBL-Plants: tr|G7L9N0|G7L9N0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi4g1v0390900_LC LjG1.1_chr4 76955009 76958791 -
2 domain predictions
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LotjaGi5g1v0348700.1
n.a. phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2H6|MCC28_ARATH MATH domain and coiled-coil domain-containing protein At3g58400; TrEMBL-Plants: tr|A0A072VRU0|A0A072VRU0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi5g1v0348700 LjG1.1_chr5 66445967 66455692 -
2 domain predictions
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LotjaGi5g1v0348700.2
n.a. Phospholipase-like (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2H6|MCC28_ARATH MATH domain and coiled-coil domain-containing protein At3g58400; TrEMBL-Plants: tr|A0A072VRU0|A0A072VRU0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi5g1v0348700 LjG1.1_chr5 66445967 66455692 -
2 domain predictions
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LotjaGi5g1v0348700.3
n.a. Phospholipase-like (PEARLI 4) family protein; TAIR: AT4G35110.4 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2H6|MCC28_ARATH MATH domain and coiled-coil domain-containing protein At3g58400; TrEMBL-Plants: tr|A0A072W2B7|A0A072W2B7_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi5g1v0348700 LjG1.1_chr5 66445967 66455692 -
2 domain predictions
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LotjaGi5g1v0348700.4
n.a. Phospholipase-like (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2H6|MCC28_ARATH MATH domain and coiled-coil domain-containing protein At3g58400; TrEMBL-Plants: tr|A0A072VRU0|A0A072VRU0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi5g1v0348700 LjG1.1_chr5 66451598 66455977 -
2 domain predictions
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LotjaGi5g1v0348700.5
n.a. Phospholipase-like (PEARLI 4) family protein; TAIR: AT4G35110.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|Q9M2H6|MCC28_ARATH MATH domain and coiled-coil domain-containing protein At3g58400; TrEMBL-Plants: tr|A0A072VRU0|A0A072VRU0_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi5g1v0348700 LjG1.1_chr5 66451613 66455686 -
2 domain predictions
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