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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0567800 |
| Transcript ID | LotjaGi1g1v0567800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G42970.1 glyceraldehyde-3-phosphate dehydrogenase B subunit; Swiss-Prot: sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic; TrEMBL-Plants: tr|I1K7A9|I1K7A9_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0567800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110107166..110110270) extracted from Lotus japonicus Gifu genome v1.2.
GATCATTTCCTTACTTCACTTAATTTTGCTTTTGCAGAGGCTTGAGGTGACAGAATTCTCTGGCCTAAGATCAAGTTCAT GCGTCACCTATGCCAATAATGCTAGAGAGTCTTCCTTTTTTGATGTTGTAGCTGCCCAACTCACTCCCAAGGTTAATTTC TTATTTATTTTGTGTTCTTTCAATCAACTTAATTAATATATTATGACATGTTTGATACTCTGCAAACCATGATAAATGCA GTAGTTTAATGGTTCCTTGTAAAGCTGTATATATATAATATAATCAGTCATGAAGTGAATATCAATATTATAACACATAA TAATTGACATCTTTGATAGATGGAGCTAAATAGGTTCAGTTTCTCAATGTAATCATTTTTTGGTTTGCTTGTACATAATT TGTAATTTGTAATTTGTGAGTTAACATCAGGCAATTGGTTCAACTGCTGTGAGGGGAGAAACTGTGGCTAAGTTGAAGGT AGCGATCAATGGTTTTGGACGTATTGGTAGAAATTTCCTGCGCTGCTGGCACGGCCGAAAGGACTCACCCCTTGAGGTGA TTGTTGTCAATGACAGTGGTGGTGTGAAGAATGTAAGTTTCTTAAATGGCATTGCCCTTCAATTAGCTTGGCTGAGTTTG TTTTGTTATTAGTACAGATTCATGGCATTTTTTGGAAATCTTTCTACAATTGATTCTATATCCTGAATTAATTCTGGTGA GAAGCTGCTGCTATGAGTAGCTTCTGGGTGTCAGAATTGATTCTGAGAAAAAAGTTGATCCAAACGTGCTATCATTAGTT TCACTGAATAATGCGAATGCTAGTTAATGACTTGTTTCTTCACATATCCAGGCTTCGCATCTGTTGAAATATGATTCTAT GCTGGGAACTTTTAAAGCAGATGTGAAAATACTAAATGAGAACACCATTACAGTTGATGGTAAGCCCATCAAGGTTGTCG CAAACAGGGACCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGATATTGTTATTGAGGTAAGTCCCCACTACTTCATT TTATTCATATGCCATTCACCTAAGTCCTGAGAAGAGAATGAAAGTAATACAAGAAGCACTTGCTACCAATATTGAAGAAA TATATGGATTTGGTAAGTCTTTTTTTTTTTTTGCATAACTTTATATGTCCTGATATCCAAGAACAACAACAAAAGCCTTA TCCAACTAAGTGAGGCCTGCGTGTTTGATTCATATTATAATTGACAGCTAGTTATACGTTAGCTGCGGCAGGCCTAACAC AACCTTCCTCGTATACCCTGATATCCAATCCAGTGAAAATTTCATGGTATTGTTTATAACTTCAGAGCTTTTGAAAAGAT TGAATGAATTTTTGTTCAGGGAACAGGAGTGTTTGTGGATGGCCCTGGTGCTGGAAAACACATCCAAGCAGGTGCCAAGA AAGTTATCATCACTGCTCCTGCAAAGGGTGCTGATATTCCAACTTATGTTGTTGGAGTAAATGAAGGGGACTACGGTCAT AATGTCGCCGACATTATAAGGTCCGTGACCACTAAATCTGTGCTTTGTTTGGTTTTTTTCTTTTTCAAACAAGATATCAA TGTTGAGATTGAAAAGAAAGGTTATTAACAGCTGAAAATGTCAATGCAGCATTGTGTTCTGTGTTGATTGTTCATTTTCC ATCCCTGAAATATACATGTATTGAGTGATTGACTTTATTCTTTCTTTTGTTTCTTTAATTTACAGCAATGCTTCTTGCAC CACAAACTGTCTTGCTCCCTTCGTGAAGATCCTGGATGAAGAGTTTGGTAAGCAAACACTCATCATATTCATAATGGCAG TTAATATTTAAGAGTCACATTCCAGACTTGAAGTCACTACCCTTTGGTCTGTATTTCCAGGAATTGTGAAGGGAACCATG ACAACCACACATTCCTACACAGGAGATCAGGTACAAGATCATACATTGGAAACTTATGAATTAACCATAGTTTTACTGCT TATGTTATTTCAAATATGAAATATCTGAAAAAGTGTTTACCAAGTCATCTATTTAATTTTCCAATTGCAAAATGGATAAA ATAATGAGATATTAATGAGATTTTATGACATTATTGAGATACTGTTGCAGATATTATGAGATTTTGTGACATTACAGAGA TATTGGTGCAGTTGTGATCTTATTGGATATTATATATATCAGATATATTGTCATCCCATAATATCAAGATATCAGTATAT GAAGTTATGGTATGAATTGTTCTTGTGCAGAGGCTTTTGGATGCTTCTCACAGGGACTTGAGAAGAGCTAGGGCTGCAGC TCTGAACATTGTCCCCACCAGCACCGGAGCGGCCAAGGCCGTGTCTCTGGTGCTGCCACAGCTCAAGGGAAAGCTCAATG GGATTGCCCTCCGCGTGCCGACACCCAATGTTTCGGTGGTTGACCTTGTGGTGAATGTTGAGAAGAAGGGTATCTCAGCT GAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAAGGGCCACTGAAAGGTGTGTTGGATGTGTGTGATGTTCCACTGGT GTCTGTGGACTTCAGGTGCACTGATGTTTCTTCTACTATTGACTCCTCATTGACCATGGTCATGGGAGATGATATGGTCA AAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGGTGAGGTTCCTGTCAATATACTATAAGCGTGTGTTTGGATTAG CATTGTCACAATTGATTTTGGATAAAATTGAATTTGGCAAAATTGATTATAGTAAAAGTATGTTGAAAGTGAAGTTATTT ATGTTTTAATTACATTTATGAAAAAAGTGATTTTGGTAGGATAATGTGAAATTCAGTTGTAAAAAATGAATTCAGTTAGT CATTGCACATAGCAGAGAAAATGAATTTTTATATCCTTGTAATAGATCATGTCATTGAACATTGATAGTTACAATATTGG TAATTGCAGCCAAAGAGTGGTGGATTTGGCACATTTGGTTGCAAGCAAATGGCCAGGCGCAGCTGCTGCACCAGGGAGTG GAGACCCATTGGAGGAGTTCTGCGAGACAAACCCAGCTGATGAGGAATGCAAACTTTATGAATAG
CDS sequence (LotjaGi1g1v0567800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGGAACTTTTAAAGCAGATGTGAAAATACTAAATGAGAACACCATTACAGTTGATGGTAAGCCCATCAAGGTTGT CGCAAACAGGGACCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGATATTGTTATTGAGGGAACAGGAGTGTTTGTGG ATGGCCCTGGTGCTGGAAAACACATCCAAGCAGGAATTGTGAAGGGAACCATGACAACCACACATTCCTACACAGGAGAT CAGAGGCTTTTGGATGCTTCTCACAGGGACTTGAGAAGAGCTAGGGCTGCAGCTCTGAACATTGTCCCCACCAGCACCGG AGCGGCCAAGGCCGTGTCTCTGGTGCTGCCACAGCTCAAGGGAAAGCTCAATGGGATTGCCCTCCGCGTGCCGACACCCA ATGTTTCGGTGGTTGACCTTGTGGTGAATGTTGAGAAGAAGGGTATCTCAGCTGAAGATGTCAATGCAGCATTCAGAAAG GCAGCTGAAGGGCCACTGAAAGGTGTGTTGGATGTGTGTGATGTTCCACTGGTGTCTGTGGACTTCAGGTGCACTGATGT TTCTTCTACTATTGACTCCTCATTGACCATGGTCATGGGAGATGATATGGTCAAAGTGGTTGCTTGGTATGACAATGAAT GGGGTTACAGCCAAAGAGTGGTGGATTTGGCACATTTGGTTGCAAGCAAATGGCCAGGCGCAGCTGCTGCACCAGGGAGT GGAGACCCATTGGAGGAGTTCTGCGAGACAAACCCAGCTGATGAGGAATGCAAACTTTATGAATAG
Protein sequence (LotjaGi1g1v0567800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGIVKGTMTTTHSYTGD QRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGISAEDVNAAFRK AAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAAAAPGS GDPLEEFCETNPADEECKLYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 65 | 65 | 8.4E-152 | – | |
| PANTHER | 1 | 65 | 65 | 8.4E-152 | – | |
| SMART | 1 | 88 | 88 | 5.1E-6 | ||
| SUPERFAMILY | 2 | 76 | 75 | 3.15E-18 | ||
| Gene3D | 2 | 65 | 64 | 2.7E-16 | – | |
| Pfam | 2 | 54 | 53 | 6.6E-12 | ||
| Pfam | 63 | 210 | 148 | 5.2E-61 | ||
| SUPERFAMILY | 64 | 211 | 148 | 3.43E-59 | – | |
| PANTHER | 65 | 242 | 178 | 8.4E-152 | – | |
| PANTHER | 65 | 242 | 178 | 8.4E-152 | – | |
| Gene3D | 66 | 212 | 147 | 5.4E-71 | – | |
| PRINTS | 69 | 85 | 17 | 2.4E-19 | ||
| PRINTS | 125 | 142 | 18 | 2.4E-19 | ||
| PRINTS | 166 | 181 | 16 | 2.4E-19 | ||
| Gene3D | 213 | 223 | 11 | 5.4E-71 | – | |
| Pfam | 241 | 261 | 21 | 1.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0567800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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