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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585900 |
| Transcript ID | LotjaGi1g1v0585900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PPPDE thiol peptidase family protein, putative; TAIR: AT3G07090.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1; TrEMBL-Plants: tr|C6THR3|C6THR3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0585900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112578840..112583438) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGGTTAGAATTTTCAAATATCAAATAAAAATCTTTACACTAGAATAAGAAAAAGTGACATGTCCTGTCAAAAAAGAA AAAGAAAAAGTGACATGTTAACCAAAAAAAAAAAAGAGAAAAAAAGTGAGAATTGAAACTTTGAATTAATAAAATGAAGA ATAACACGTGGAGTTGAACTTGTGGTGAGTAGGTTCTAGAAGGTGATAGAGACTAGGAAACGGTCGTTATGGAACCAACC AGATCTCCAACACCATACCAATACGGCAATACCACTCTCTATTTAATGACATCCTCTCTCACACGGTGCGCTTTGTTTTC TTCTTGCATTCGCTCGCGCTATCTTCTCAACTTCTTTCCTTTCCATTGTGAGTTCATTGTTTATTCGTGAATTTGGATGT TATTCCTGTTGTTTTGGAGTTCGAATTTTGTATTTGTGTTCTCAATTTGGTCATGTCCCATTTGGAACAGTGTCTGGTTT TTTTTAGGGTTTGAATCCCAATTGTGGAAATTTTCATGTGGGTTTTAGATTTGATTTGTTGTTTGTTTCTTTCTTTATGT TCCTTGGCTAGGGGGACATTGTTGTTGGGATGTAATTCCCCCTTTTCATTGATGGGTTTCTGTCAATTATGGCTAATTTT GATGCTAGGGTTTTGTGGGTCAGAAATTAGGGTTGGATCATGTGCTTTTATTGATGACAGTTTTTGTGAATTTGATATAT ATATATATATATATATATATATATAATATTTTTATTTTTTTTCACATGTTGTTGAGTTTATGAAATTGTGTCTTCTATGG TTGTTTTTGATTAAGCTTCATTACTGATTCTATCAGGTTATTGTGATAGGTTCTTCCATTGGAGTATCTACAAAACTCCT TTTCAAGTGTTTTAGCAGCTGAATAATTTTTACACTAAACTGCGTTAGATGGCTGAGGTATGTGATACTGATGTACTGTG CCTAATTTTAGTTGTTTTATATTCGACATACTTCTAGTGCTTCACGGCTAATTTGTGCATCTATCACCGCATTTGATTGC AGGAGGGTCACAGGGTTACTCTTAATGTTTATGACCTAAGCCAAGGTCTCGCTCGACAGCTTTCAACGTCCTTTTTGGGG AAAGCTATTGAAGGCATATGGTGAGTGCTTGTCTTTGCTGTTGGTCTTGTGTATAATGATCTTGATTTAATATCATAGTT AGTTGGTGTATCCTACACAAATTGATTTGGGAGTTGTGTAATGTATGTGTTGCTGAAATTATAACGTGGGGATTTTTACA TGTGTAGTTTACAAGAACTGTTGAGCAGGACAAAGTTTTCTAAATTTTGAAACTATATTCATTAACAATTTTTTAAGCGT TTTTATTTAGAAGAAGAGAAAATAAACAAAGAACAAGCGAAAATAACAGTTTGAAGGAGATCATGTAGGAAAACTAATCT TCAAAAGAAAACGGTGCACAGCATTTAGTATCGCTATGACAATTCTAGAGAAGACAAATAGTGCCTTTTTAGGAAAATTT CACATTTGTGAGGGTGAAGGAAAGACGATGAATGTGAATGATGAGGAGGATGATTCTTAGAATTGGATTCCAAGACATGA AAAATTTGTGTTTAGACAGAAACATATAAACAGAATTTTGTTTTGAGACGGAAGGGTGAATGAGGAAGAGAGGGTGGTTT TTAAAGGAAAAGACTCGGTAGAGAATTTTATTTTGAGATTGCTAATAACAAACAGAAAGTTTTTTTTTCCCACACAGGCC GTAGCTATCCCCACACGCTCATTTTCTCATGAGTTTTTCACATAGTATTGAGAAAATCACGAGTCAATGTGTGGATGGAA GATAGCTACAACTTGTGAAAATAGATTTGTGTTTGTGAGTAGCACTCTCAAAACCGGTCCACTGTCATGTTTATTCTTTG AGAACCATCTTCCTTAACCTTCTCATTAACCCTTCCTTTAAGCTCACAGACGTGTAATCCTTCTCTAAATGAAATTCTGT TTGTGAGTAGCTCAATACAAATTCTCTAGGTCAAGTTCATTCTTTACATAAAACCAGTTCTAGGAACCATTCTCCTCATC TTTCTCATCTGCCCTTTCTTTAAGCTTGCTCACAAATGTGAACTCTCCCTACTGCTTGTTTTCTCTAGACTCTTCTGTTT GTGCAGGATGGCTCTCATTGTTTCTTTAATTGCTTTTCTCTTTTACTTTTTCCTATAATTGTCATCAGTGAAACTGAAGG TGCTGCACCGTCTAGCTACCATAATTTTTTTAGGGGTTGTTTGGAAACTAAAAACTTAAGCATAAACATGTATCTTTTGG GATTTTAGTTTTAAAACATGGAAATAAGACTTGCTTTTTCAAAAAGGGTTCATACCAAACAAGTTTTGTAACTAAATCGT AATCAAACAGGCTCTAAACTATAATACCTTACACATGCCTTTTCCCCTTGTATTTTTGGTTGTTTAAGTAAACTGTTTAG TGCACGATTTGTATTTTGTTGGCAATTGAAATGTTATTTGTTTGTACTGCAGGCACACAGGAGTTGTGGTTTATGGTAAC GAGTATTACTTTGGAGGTGGCATACAACATTCTCCTGCTGGATCAACACCATATGGAGCTCCACTTAGAGTGGTAGAATT AGGTGTTACACATGTGCCAAAGGATGTCTTTGAAATGTATTTGCAGGAGATCAGTCCGCGGTACTTGCCTGAAACATACA GTTTGCTTACCCACAATTGCAACAACTTCTCCAATGAAATTGCTCAATTTTTGGTTGGTTCAACCATTCCTGAGTATATC CTACAGCTCCCTAATGAAGTTATGAGCAGCCCAATGGGGGCTCTTATATGTAAGTCATCTCCTACAATACTTACATTTAG AATTTGTGCTGGGCTGTGTACTTCCGGTAGATATATGAAAATTATCTAGTATGATATAATGTTATGATAGAATGAAATAA CTCAGGGATTTATCTAATTGTTTATGGCATGTAAAGAACTACTGAATATGGTTCTGCCTGGGATGTCATCTTCATATTTA ACCGTTCAATTTTAGCTTAGCATCTCCATGTCAGTTATCTTCTTGTATCATTTTCTTTCATATGTCTGATAATCACTTTT ATAGTGTGTATTTACTTCTTTTTCTTCAGAATCAATTGTGACTCTCAGAAATGACTTGTTAGAATTGATTTTGGCTAAAG AACTAACAGAAGAAAAATTTCTGAATATGCACTTAAATTATATTTACAGTTATCTTTTGAATGAATTTATCTGTCTACAC TTAATTGTTTTAAGCACAATATTGGAATTACAGAATGTTTCATTAAGAAGAAAAAAAACTATTTAAGAAGCCTTTTCTCT GTTTTGTTGATGTGCGCTTGGTTTGCCATAATCTTCGTTCAGATATTGATAACTCATTTTATTTTTTTGCAGTGCCCATG ATACAGAATTTGGAGACAACATTGAAATCTGGTGGAGTGCCACAAGTACCACAGTTTAGGCCTTCGACCGTGAATCCTTC ACTTTCTGCCTCAGCTAACACTCCCAAGAACCCTAGTGTTCCCAACACATCCACCACTAAGGAAGTGAGAGGCAAAGAAG ATATTAGCCCTCAGAAGACAGCAACTGCAGTGTCTCCTTCTCCTTCTGCAAAGCCATCCTCTGATAATGCTGTTACAGCA GCAGATCCTCTTGGAGATGCTCGCAACAAGGTTCAAGATGAGATTATCAAAGAGTTTGCTGCGATTATGGCAACTGGGAC AATGCGTGCTAGTGAGGCTGCAACACTTGCAACCAGAAGAGTCATGCAGAGATATGGTCAGATTTCTGTGTCACAGAGTT AGCAACACTAATGTTTATTTTGTCATAACAATTATGGGTCTAAAAGACTAAAAACCTTTGTTATACACTCGCTGCAACTA TTTGTGGTGAATTTATCACATTGATTATGATTAAATTGGGGGGAATCATTTGAATCACTTATGTTGGTATCTGTTTTGTG GATTTAGCCTTTTGGCCATGAAATTTTAGTGGAAGCGCCTCTTGAATGAACTCGAGTACTAGTCTAGTGGAAAGGTGATA AAATTAGTGTCCTAAAACTTGACCAATAAACAACAATAATGTCGTCCTTAAATGTAGGCCATATTCTTTGTCGGTGGAAT AAGACCTAGTAACAATTGTTTGAGTTGATGGCCCCGAGTCCTTAAAGCGTGTGTTTTGTGATCCACATTTAGAGAAGCAA TAGGTTTTGAAAAAATGGATCCATGCTGCCAGAATTAAATTTCTAAATGGTGTTCAACATTGGGATCAAAGGCGATCACA TTCATGTGAATTTAACGTTAATCAGCTGTCCAGAGCGGGAAAATGACATGATTTCATGGGTATCACTGTAGTATATAGTT AGTTTTTTTATTTGAAGGGCACTATGTTGTTTGATATTCCAATTTCCAACATCCTTTGGGATTTTCCCATAAGCAAAATG TAATACTCACGTCACTCCTTTACAAGAACTTGAGGGGTGAAGTTTGTTCTCTTTTATAAAAGCTAATTTAAATTTTATGG TGCAGTAATTATTTTTGGCAATAATATTCTTAATTAATT
CDS sequence (LotjaGi1g1v0585900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGAGGGTCACAGGGTTACTCTTAATGTTTATGACCTAAGCCAAGGTCTCGCTCGACAGCTTTCAACGTCCTT TTTGGGGAAAGCTATTGAAGGCATATGGCACACAGGAGTTGTGGTTTATGGTAACGAGTATTACTTTGGAGGTGGCATAC AACATTCTCCTGCTGGATCAACACCATATGGAGCTCCACTTAGAGTGGTAGAATTAGGTGTTACACATGTGCCAAAGGAT GTCTTTGAAATGTATTTGCAGGAGATCAGTCCGCGGTACTTGCCTGAAACATACAGTTTGCTTACCCACAATTGCAACAA CTTCTCCAATGAAATTGCTCAATTTTTGGTTGGTTCAACCATTCCTGAGTATATCCTACAGCTCCCTAATGAAGTTATGA GCAGCCCAATGGGGGCTCTTATATTGCCCATGATACAGAATTTGGAGACAACATTGAAATCTGGTGGAGTGCCACAAGTA CCACAGTTTAGGCCTTCGACCGTGAATCCTTCACTTTCTGCCTCAGCTAACACTCCCAAGAACCCTAGTGTTCCCAACAC ATCCACCACTAAGGAAGTGAGAGGCAAAGAAGATATTAGCCCTCAGAAGACAGCAACTGCAGTGTCTCCTTCTCCTTCTG CAAAGCCATCCTCTGATAATGCTGTTACAGCAGCAGATCCTCTTGGAGATGCTCGCAACAAGGTTCAAGATGAGATTATC AAAGAGTTTGCTGCGATTATGGCAACTGGGACAATGCGTGCTAGTGAGGCTGCAACACTTGCAACCAGAAGAGTCATGCA GAGATATGGTCAGATTTCTGTGTCACAGAGTTAG
Protein sequence (LotjaGi1g1v0585900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEGHRVTLNVYDLSQGLARQLSTSFLGKAIEGIWHTGVVVYGNEYYFGGGIQHSPAGSTPYGAPLRVVELGVTHVPKD VFEMYLQEISPRYLPETYSLLTHNCNNFSNEIAQFLVGSTIPEYILQLPNEVMSSPMGALILPMIQNLETTLKSGGVPQV PQFRPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAVSPSPSAKPSSDNAVTAADPLGDARNKVQDEII KEFAAIMATGTMRASEAATLATRRVMQRYGQISVSQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 162 | 161 | 4.4E-63 | ||
| PANTHER | 2 | 175 | 174 | 6.8E-111 | – | |
| PANTHER | 2 | 175 | 174 | 6.8E-111 | ||
| SMART | 6 | 147 | 142 | 1.3E-61 | ||
| Pfam | 6 | 145 | 140 | 6.3E-44 | ||
| ProSiteProfiles | 6 | 146 | 141 | 57.774 | – | |
| MobiDBLite | 156 | 190 | 35 | - | – | |
| MobiDBLite | 156 | 229 | 74 | - | – | |
| PANTHER | 188 | 270 | 83 | 6.8E-111 | ||
| PANTHER | 188 | 270 | 83 | 6.8E-111 | – | |
| MobiDBLite | 202 | 220 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0585900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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