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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008580
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.948s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0068029.1
n.a. PREDICTED: UPF0326 protein At4g17486-like [Glycine max] gi|356563354|ref|XP_003549929.1| chr0 24263324 24269152 -
3 domain predictions
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Lj0g3v0250879.1
n.a. PREDICTED: UPF0326 protein At4g17486-like [Glycine max] gi|356530830|ref|XP_003533983.1| chr0 130059597 130063662 +
3 domain predictions
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Lj0g3v0301429.1
n.a. PREDICTED: deSI-like protein At4g17486-like isoform X1 [Cicer arietinum] gi|502123618|ref|XP_004498191.1| chr0 156665904 156671379 -
3 domain predictions
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Lj0g3v0320029.1
n.a. PREDICTED: deSI-like protein At4g17486-like isoform X1 [Cicer arietinum] gi|502151621|ref|XP_004508531.1| chr0 167031888 167037304 +
3 domain predictions
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Lj1g3v1821130.1
n.a. PREDICTED: UPF0326 protein At4g17486 [Glycine max] gi|356515068|ref|XP_003526223.1| chr1 22317324 22319798 +
3 domain predictions
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Lj1g3v3530550.1
n.a. PREDICTED: desumoylating isopeptidase 1-like isoform X1 [Cicer arietinum] gi|502103553|ref|XP_004492309.1| chr1 40510008 40513686 +
3 domain predictions
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Lj2g3v1989220.2
n.a. PREDICTED: nudix hydrolase 8-like [Glycine max] gi|356540550|ref|XP_003538751.1| chr2 29806579 29812678 +
3 domain predictions
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Lj2g3v1989220.3
n.a. PREDICTED: deSI-like protein At4g17486-like isoform X1 [Cicer arietinum] gi|502160360|ref|XP_004511719.1| chr2 29808164 29812678 +
3 domain predictions
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Lj2g3v1989220.4
n.a. PREDICTED: deSI-like protein At4g17486-like isoform X1 [Cicer arietinum] gi|502160360|ref|XP_004511719.1| chr2 29809764 29812678 +
3 domain predictions
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Lj3g3v2170510.1
n.a. PREDICTED: deSI-like protein At4g17486-like [Cicer arietinum] gi|502174443|ref|XP_004515519.1| chr3 26884841 26886498 +
3 domain predictions
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Lj5g3v0090540.1
n.a. PREDICTED: deSI-like protein At4g17486-like [Cicer arietinum] gi|502125968|ref|XP_004499134.1| chr5 686264 690434 -
3 domain predictions
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Lj5g3v0526510.1
n.a. PREDICTED: deSI-like protein At4g17486-like [Cicer arietinum] gi|502125056|ref|XP_004498779.1| chr5 5637900 5640681 +
3 domain predictions
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LotjaGi1g1v0379200.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT5G25170.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T5W0|I3T5W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0379200 LjG1.1_chr1 86020152 86023356 +
4 domain predictions
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LotjaGi1g1v0585900.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT3G07090.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1; TrEMBL-Plants: tr|C6THR3|C6THR3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0585900 LjG1.1_chr1 112578840 112583438 -
4 domain predictions
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LotjaGi1g1v0585900.2
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT3G07090.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1; TrEMBL-Plants: tr|C6THR3|C6THR3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0585900 LjG1.1_chr1 112579411 112583300 -
4 domain predictions
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LotjaGi1g1v0585900.3
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT3G07090.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1; TrEMBL-Plants: tr|C6THR3|C6THR3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0585900 LjG1.1_chr1 112579597 112582510 -
4 domain predictions
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LotjaGi2g1v0011200.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|A0A0L9UUB3|A0A0L9UUB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0011200 LjG1.1_chr2 4135657 4141510 -
4 domain predictions
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LotjaGi2g1v0011200.2
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|A0A0L9UUB3|A0A0L9UUB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0011200 LjG1.1_chr2 4136473 4138313 -
4 domain predictions
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LotjaGi2g1v0081800.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT4G17486.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I1JW53|I1JW53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081800 LjG1.1_chr2 22376077 22378644 -
4 domain predictions
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LotjaGi2g1v0123600.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT4G25680.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3SXA8|I3SXA8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0123600 LjG1.1_chr2 45332979 45337752 +
4 domain predictions
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LotjaGi3g1v0351300.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT1G80690.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I1KVJ5|I1KVJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0351300 LjG1.1_chr3 73022822 73025076 +
4 domain predictions
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LotjaGi4g1v0199900.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT4G17486.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3S5Z1|I3S5Z1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0199900 LjG1.1_chr4 46277048 46283059 +
4 domain predictions
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LotjaGi4g1v0267700.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT4G17486.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|A0A151S8K3|A0A151S8K3_CAJCA UPF0326 protein family; Found in the gene: LotjaGi4g1v0267700 LjG1.1_chr4 63309385 63314444 -
4 domain predictions
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LotjaGi5g1v0018100.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T2B7|I3T2B7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018100 LjG1.1_chr5 3533995 3538809 +
4 domain predictions
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LotjaGi5g1v0018100.2
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T2B7|I3T2B7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018100 LjG1.1_chr5 3534248 3538358 +
4 domain predictions
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LotjaGi5g1v0018100.3
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T2B7|I3T2B7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018100 LjG1.1_chr5 3535614 3538145 +
4 domain predictions
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LotjaGi5g1v0055700.1
n.a. PPPDE thiol peptidase family protein, putative; TAIR: AT5G25170.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T2I4|I3T2I4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0055700 LjG1.1_chr5 9438745 9442069 +
4 domain predictions
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