Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0596300 |
| Transcript ID | LotjaGi1g1v0596300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G12850.1 Far-red impaired responsive (FAR1) family protein; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|I3SMC5|I3SMC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0596300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113575621..113580261) extracted from Lotus japonicus Gifu genome v1.2.
AGAATTAAAAATAAATATTAAAATAGTTTAATGTATTTAATTTATTTTTTTTATGATAGAAGGCGGTTTGGCAGGAAGGG GAAATGATGTCAAAATTGCATGACTAACAAAGCTAATTTTTTCTTTTCCCTTAATTTTCTTTTCAACCAAATAAATAAAA AATCATCTAATTTTCTACTCACATCATTTTCATACCAAACATTGATCCACACTAGTTGGTTATTCTTATGACAAGGTGAC AAGGGTTTGCCCCCACCGGAACAGTAAAACTGAAGAATACCCAAAATCTCATTTCATTCTTACACGATACTTGGACTCCT TCAACTTCTAACTATCGACAAAAACGTGACGACACACACCCGCTACAGAACAGTAAGTTTTCCTTTTCTTGTTTCTTTCT GCAAAACGCAAAACAACAAATTACTCAGATCAATCCATATAAGTGTGAGTTTTGTTCAAAAAGATTACTGTTTCCTATTG TCTTCCTGATTATATTTGTTAAAAACATAAGGTATGCTGTATGTATGTCTTATAATCTAAGAATATGAATAATGATGATG TATGAGAGATTTGTGGCTGGCTTCAGATGTTGAGGCCCACACTTGAACATAATGACTATGGGATTTGGGGATTTAGAAAT TTGTGGTAAGATTAGTTTACAAGGTGCAATATGACAGATTTTGAAGGATGAGTGTTTGCCTATCCAAGCAATTTCAATGA TTAAGTTGGGTTTGGTTATAGTATGATTTAGGGTGTGCAACTCTTTAGTTGTTTATAAAAAGTTCCATTGTCTTTAGTTG GGTTTGGATGAACCATTTATCTATTACTTTTATTATCTGCACAATATACTAGTAATAGTATCATATATGAATTTTACTCA ATTGCTTTGAAATAATTCATTTTACTGTATCTCCCTTCGTCCTTTTTTCTTGTTGGTCTTTAAAAGCAAGCTATGAATCA AGGTTCTGTTTCTATACTCCAGCTGATAATATATTTCTCAATGGCCTGGAGAATGGACATACTTCAGTTTTAGGTTTTCC GAACTCAATAACACTGCAGACTATTTTCTTTTCTTCTCTGAACTTGTTGGATGTGTTCCGTGGATTGCATAGGGATATGC AAATTTAAAAACACTGAATTTTTATGTATCAATGACTATGACTATTTGCAAGTGTTTATCTTAATGACAAAAATGGGCAG ATTGTAATGGATTTATGGTAGTGGATCTGGACAGGGGAAATGAAGCAGAACATAGCTGTCTTGAAGAGAGTACAAGTGTT GGAGTTGACGTTCAAGAGCCATATGTTGGCATGGAATTTGATTGTGAAGAAGATGCCAGGAAATTTTATGTTGAATACGC CAAACGGGTAGGATTTGTTGTACGCATTATGCAACGTCGGCGTTCTGGAGTTGATGGGAAAACTCTTGCCCGTCGACTTG GATGTAACAAACAAGGATTCTCATCACACAACAAGGGAACATTGGGGCCAGAGAAAAAGCCAAGACCTAGTGCCCGTCAA GGTTGCAAGGCAACAGTTTTGGTGAAGTTAGAAAAATCTGGAAAATGGGTTGTTACAAGATTTGTAAAGGATCACAACCA TCCTCTAATTCCTACAACCAATGGGTTTAGTACAGTGGTGAGTTTTTTATTTGTTTAAATAATTGTGACGTGTTTATTAT AACTTTCCACTTGTTTAAGTAGATCTACATTGCCTCCTAGGTATAAACTTGTTGCATCCTCTCTGTAGGCGGTGATTCTT TTCATGCACCTGCTTTGCAAGTGTCTGTGAATGTATCTGTATGCATACGACCGGTGATTTAACTGTGGTGAACTTAAATT GCTGGATATCATCATTTTGATATGTTTTGTTAATATCTTCCATAACCTGCGACATCACATTATGCTTTTGCTAGATTGTA TGATTCTGTTTATTTGGATTTTGTGTAACTCAAGTCTTGGAAAATGTTTTTGGATGTCTAGAAATATTAATGTGCATCTG AAACTAGTAAATTAGACAAAGAAGAAAAACAGCTATTGGGAGTTCTTTTTACCTAATTTCTTTTGCTCAGAAATGCTGCT GATTTTATATTTAAATAATTGGCGTGGCGTTTTGTGAAATTTTCTATTAATGTTCAACTTTAGGGAATTGCATTATGGTA GCTTGCTCTTCCAAAAGTTGATGTAGTTTATGCCATTGGAAGGGAAATTTTATTTCAATAACCATTGTTATTTTTCTAAT GACCAAAATTTTCTTTTTATTTCAAATTTAAGTTGCCATGTTTCTTTCTGAGGGCTTTCAGTTGAAATCAAGCTTGAATG TCAGTTAAAGAGTAACAGATTGACCCATGTTCTATTTTTAAGGGTGCCAATGGCTCTGGCTCTAGTAAGTAGTAACATAC GATTGAATTTTGTATTTTGGTGGCTGTAGAAAATTTACTAGAAAAGGAGAAAATTACACTTAGTTTCCCCACCTTAAACC CTGTGGTGCACCCTCATATTTTGTACACAAACATTTGTGGTGGACATTCAAATACTCCCGTCGTAAAGCTTTAGTTAGGT CGTAAGTCCCCCCCCCCCCTCCCTTTATGTGCTTCCACTTATGGGTGGTGAAATGTATTAATCTTAGGAATGATGTGCTT TGACATAATGGTTTAAGCTTTTAATTTGGATTGATGCTTGACTCGGCCTCTTTGACCAACTGATTAGCAGTGTTGTTAAT CACAGATCACTGATAATAGCAGAAAGCCAACAATCCCCTATGTCAAACCCTCATCGGAAAATAGCAGATAGCGGTGAGCG AGGGAGAGCACTGCGCTATAGCGCTGTGATATCCGCTATTTGACTACACTGCTGATTAGGTGTTTGATTTAGGTTGCATT TGTTCTTGACTGTTAGCTGTTTATTTATGTGAAATCTACATGAGCAATGAGGTTGGCATTCTCGCATTCACATTTCTGCT ATTCGAGTTTGTATGCTGTCACCAATTTGTTATTACTTGCTGGAGTAAAGTATTTTTTAGATGACATGCTTTTGTATTGG TTCTGCCATTCTGGCTTTTCTTCCTGTTCATGATTCAGGTTGTTGAGTGCAGCTTCATTCATCTTAAGTATCATTACCCA GGATACTTGGTGGTGGGTCGGTGGAATATGGACGTACAACTTTTGATTAGGATTGAACATTAATACTACCTAGGCACATG ATTCTTTGTAGCTGACGTTCTGATATCTTTTGCATTCTTCGGGTTTTTTTTTCTGGTACATACCTTGGATGACTTGAATA ATGATGTGTTGATGCATATATTTGCATGCTTACTTCCTCTTCACTTTTTGTGCTAGTTTTCAGGTGTTCCAAGTTAGTTT TTGTTGTTCATTTGGCACGTAAGAAATGAGTAGTTACGACTTTGCCTAGAATCTGGTTCTGAGAGATAAATGGTTGTTCC ATTGGCTGTTCTCAATTAAATTTAAACTAATTAAATTAAACTGGAAGTAGCATATGGAAGTTTAGATAGTTTTATAATGA TCTTTGTTCCTTTAGTTTTTATTGAGTTGAAAGATCATTTTTTCTACATGCAGTTAGTGTTTTACTCCCTCCGTTCCTGA TTAACTGTCCACTTTGAAGAAAAAATTGTGTTCCTATATATCTGTCCACTTAGAGTTTCAAGAGAGCATTAATTGATGTT TTTCCAAGAAATGCCCTTACATAAACAATAAATGAAGAAAGATAAAATACATTCTAAAGGGTGATATAGGAAAACAAATA GTATTTTTATAAAAATCAACACAATTAATTGTTTTCCTTAATTTGTGTGAACCTTCTCTTCCTGGACAGATAAATAGGAA CGGAGGGAGTATATTTGTTCTTGGTCTCTGTAGAACTATTACTTGTGAGGAGGAATCATTCATGACTTTCACAATTTTTT TTTAATATTTAGTTTTCAATTTCTATTCCAATTCTGCTAGATCTATGGATCTCTACCGATTCTGAAGATAATTTCTCCTC TACTTGTAGGGTGATAAAGATGAGAAAATTGCAGAACTTTCTATGGAGTTAGAGCGCCAAGATCAACTGTGTGCTGCCTA CCGAGAAAAGCTACTCAGCTTCATAAACAAAGTTGAGGACCAAACAGAGGAACTGTCCACAAAAATTCAGCTCATTGTTG AAAATGTTAGGAGAGCTGAGTCAGAAAGCATAAATATTCCTAGAACAGAAAGTCACGGTTCTTAACTTGAGTGTATGAAT GAATATGGTGTAACTGTATTTTGCTAGGTGAACCTCCCCTCTAGGCAGAAGCAAGAGGTTCAATGTAGCATTTTTTTTGG GCCTTGAGGGATTTTCGGTTTAACTTAAACATGTTACAAGGGCAGAGGTAACCTTGAGTATTCTGCTTGATGAATCAAGG CAAGTAACACAAAAAGAGTTCTTCAATACCCCTAACAATGAATACAGAATGATAGCGACCACAGCTAAAGTGACTAGTGA AGGCTGGGGAAGGTAACATAAGATGTCCGTGTAATTTTTATACAGATGTACAAAGTTTGAGTAATATGAAATGATGTTTA TTTTGGTACTGTATATCTTTTCTGGAAACCTCATCATTCTAGATGAAAGCATATAGACGTGAAATGTCATCTTATAAGGA T
CDS sequence (LotjaGi1g1v0596300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGTGGATCTGGACAGGGGAAATGAAGCAGAACATAGCTGTCTTGAAGAGAGTACAAGTGTTGGAGTTGACGTTCA AGAGCCATATGTTGGCATGGAATTTGATTGTGAAGAAGATGCCAGGAAATTTTATGTTGAATACGCCAAACGGGTAGGAT TTGTTGTACGCATTATGCAACGTCGGCGTTCTGGAGTTGATGGGAAAACTCTTGCCCGTCGACTTGGATGTAACAAACAA GGATTCTCATCACACAACAAGGGAACATTGGGGCCAGAGAAAAAGCCAAGACCTAGTGCCCGTCAAGGTTGCAAGGCAAC AGTTTTGGTGAAGTTAGAAAAATCTGGAAAATGGGTTGTTACAAGATTTGTAAAGGATCACAACCATCCTCTAATTCCTA CAACCAATGGGTTTAGTACAGTGGGTGATAAAGATGAGAAAATTGCAGAACTTTCTATGGAGTTAGAGCGCCAAGATCAA CTGTGTGCTGCCTACCGAGAAAAGCTACTCAGCTTCATAAACAAAGTTGAGGACCAAACAGAGGAACTGTCCACAAAAAT TCAGCTCATTGTTGAAAATGTTAGGAGAGCTGAGTCAGAAAGCATAAATATTCCTAGAACAGAAAGTCACGGTTCTTAA
Protein sequence (LotjaGi1g1v0596300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVDLDRGNEAEHSCLEESTSVGVDVQEPYVGMEFDCEEDARKFYVEYAKRVGFVVRIMQRRRSGVDGKTLARRLGCNKQ GFSSHNKGTLGPEKKPRPSARQGCKATVLVKLEKSGKWVVTRFVKDHNHPLIPTTNGFSTVGDKDEKIAELSMELERQDQ LCAAYREKLLSFINKVEDQTEELSTKIQLIVENVRRAESESINIPRTESHGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 203 | 201 | 5.3E-109 | – | |
| PANTHER | 3 | 203 | 201 | 5.3E-109 | – | |
| Pfam | 43 | 132 | 90 | 1.5E-29 | ||
| MobiDBLite | 79 | 102 | 24 | - | – | |
| Coils | 148 | 168 | 21 | - | – | |
| Coils | 173 | 200 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0596300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…