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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004330
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 118 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.720s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059989.1
n.a. Far1-related sequence 10 isoform 1 [Theobroma cacao] gi|508781702|gb|EOY28958.1| chr0 19927302 19930291 +
2 domain predictions
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Lj0g3v0085139.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] gi|359491925|ref|XP_002273512.2| chr0 34013556 34014155 -
2 domain predictions
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Lj0g3v0136299.1
n.a. PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Cicer arietinum] gi|502111329|ref|XP_004494023.1| chr0 62700354 62701538 -
2 domain predictions
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Lj0g3v0215159.1
n.a. Os01g0519766 [Oryza sativa Japonica Group] gi|297720039|ref|NP_001172381.1| chr0 108997511 109001502 +
2 domain predictions
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Lj0g3v0215159.3
n.a. Os04g0316800 [Oryza sativa Japonica Group] gi|297602453|ref|NP_001052447.2| chr0 108999337 109001502 +
2 domain predictions
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Lj0g3v0224509.1
n.a. FAR1-related protein [Medicago truncatula] gi|357506585|ref|XP_003623581.1| chr0 115966749 115968501 -
2 domain predictions
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Lj0g3v0232569.1
n.a. FAR1-related protein [Medicago truncatula] gi|357491091|ref|XP_003615833.1| chr0 120716225 120718246 -
2 domain predictions
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Lj0g3v0249079.1
n.a. FAR1-related protein [Medicago truncatula] gi|357437905|ref|XP_003589228.1| chr0 129106483 129108022 +
2 domain predictions
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Lj0g3v0304669.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] gi|225452218|ref|XP_002271204.1| chr0 158683441 158688221 +
2 domain predictions
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Lj0g3v0321259.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Glycine max] gi|356535278|ref|XP_003536175.1| chr0 167741082 167742678 +
2 domain predictions
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Lj0g3v0363549.1
n.a. FAR1-related protein [Medicago truncatula] gi|357491613|ref|XP_003616094.1| chr0 191773707 191777088 -
2 domain predictions
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Lj1g3v0162460.1
n.a. FAR1-related protein [Medicago truncatula] gi|357470459|ref|XP_003605514.1| chr1 1853748 1855770 -
2 domain predictions
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Lj1g3v1809910.1
n.a. n.a. chr1 21818377 21823401 -
2 domain predictions
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Lj1g3v1932810.1
n.a. FAR1-related protein [Medicago truncatula] gi|357490981|ref|XP_003615778.1| chr1 23128349 23129428 +
2 domain predictions
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Lj1g3v3556900.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|358344944|ref|XP_003636545.1| chr1 40823018 40823559 +
2 domain predictions
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Lj1g3v4251260.1
n.a. n.a. chr1 50190988 50198617 -
2 domain predictions
 –
Lj1g3v4251280.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max] gi|356528708|ref|XP_003532941.1| chr1 50195744 50198203 +
2 domain predictions
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Lj1g3v4467990.1
n.a. Os04g0316800 [Oryza sativa Japonica Group] gi|297602453|ref|NP_001052447.2| chr1 52372713 52375230 +
2 domain predictions
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Lj2g3v1573090.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356540888|ref|XP_003538916.1| chr2 25050422 25055080 -
2 domain predictions
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Lj2g3v1573090.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356540888|ref|XP_003538916.1| chr2 25050422 25055080 -
2 domain predictions
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Lj2g3v1695250.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera] gi|225433914|ref|XP_002267960.1| chr2 26173585 26176870 +
2 domain predictions
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Lj2g3v3413360.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356553419|ref|XP_003545054.1| chr2 43175445 43180582 -
2 domain predictions
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Lj3g3v1953520.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Glycine max] gi|356508152|ref|XP_003522824.1| chr3 25147818 25153555 -
2 domain predictions
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Lj3g3v2027410.1
n.a. n.a. chr3 25946159 25949597 -
2 domain predictions
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Lj4g3v0070730.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 8-like [Glycine max] gi|356555835|ref|XP_003546235.1| chr4 458000 463422 -
2 domain predictions
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Lj4g3v0070880.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max] gi|356558023|ref|XP_003547308.1| chr4 471879 475670 -
2 domain predictions
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Lj4g3v0119630.1
n.a. FAR1-related sequence 5 [Theobroma cacao] gi|508711715|gb|EOY03612.1| chr4 1072432 1073181 -
2 domain predictions
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Lj4g3v0120440.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cicer arietinum] gi|502100164|ref|XP_004491651.1| chr4 1344252 1344717 +
2 domain predictions
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Lj4g3v0620710.1
n.a. FAR1-related protein [Medicago truncatula] gi|357470459|ref|XP_003605514.1| chr4 9727356 9729180 -
2 domain predictions
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Lj4g3v0654370.1
n.a. Methyltransferase FkbM family [Medicago truncatula] gi|357446127|ref|XP_003593341.1| chr4 10493933 10498548 +
2 domain predictions
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Lj4g3v2120630.1
n.a. TPA: FAR1-domain family sequence [Zea mays] gi|414886878|tpg|DAA62892.1| chr4 29136216 29139690 +
2 domain predictions
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Lj5g3v2110900.1
n.a. PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Glycine max] gi|356534293|ref|XP_003535691.1| chr5 30186709 30191029 -
2 domain predictions
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Lj6g3v1038750.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Cicer arietinum] gi|502134082|ref|XP_004501994.1| chr6 11602445 11608810 +
2 domain predictions
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Lj6g3v1722710.1
n.a. Far1-related sequence 10 isoform 1 [Theobroma cacao] gi|508781702|gb|EOY28958.1| chr6 19527022 19529291 +
2 domain predictions
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LotjaGi1g1v0000400.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|V7BDM7|V7BDM7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0000400 LjG1.1_chr1 306483 311877 +
2 domain predictions
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LotjaGi1g1v0116900_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0116900_LC LjG1.1_chr1 18366545 18369821 -
2 domain predictions
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LotjaGi1g1v0136200_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151RX65|A0A151RX65_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0136200_LC LjG1.1_chr1 22142922 22144936 -
2 domain predictions
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LotjaGi1g1v0136200_LC.2
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151RX65|A0A151RX65_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0136200_LC LjG1.1_chr1 22142922 22144936 -
2 domain predictions
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LotjaGi1g1v0147500.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A0R0HZT4|A0A0R0HZT4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147500 LjG1.1_chr1 25209326 25215227 +
2 domain predictions
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LotjaGi1g1v0155200_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151RQA5|A0A151RQA5_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0155200_LC LjG1.1_chr1 27537007 27540396 -
2 domain predictions
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LotjaGi1g1v0218400_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0218400_LC LjG1.1_chr1 48314552 48331047 +
2 domain predictions
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LotjaGi1g1v0218400_LC.2
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0218400_LC LjG1.1_chr1 48322818 48330527 +
2 domain predictions
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LotjaGi1g1v0218400_LC.3
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0218400_LC LjG1.1_chr1 48322899 48330527 +
2 domain predictions
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LotjaGi1g1v0267800_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT3G06250.1 FAR1-related sequence 7; Swiss-Prot: sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7; TrEMBL-Plants: tr|I3SGR2|I3SGR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0267800_LC LjG1.1_chr1 65408469 65410803 -
2 domain predictions
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LotjaGi1g1v0374900.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT1G10240.1 FAR1-related sequence 11; Swiss-Prot: sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11; TrEMBL-Plants: tr|A0A072VWW8|A0A072VWW8_MEDTR FAR1 DNA-binding domain protein; Found in the gene: LotjaGi1g1v0374900 LjG1.1_chr1 85316985 85324533 +
2 domain predictions
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LotjaGi1g1v0385300_LC.1
n.a. FAR1-related sequence protein, putative; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A0R0G2U3|A0A0R0G2U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0385300_LC LjG1.1_chr1 86905456 86906950 +
2 domain predictions
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LotjaGi1g1v0390900_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 11; TAIR: AT5G28530.4 FAR1-related sequence 10; Swiss-Prot: sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10; TrEMBL-Plants: tr|A0A151TCH1|A0A151TCH1_CAJCA Protein FAR1-RELATED SEQUENCE 11; Found in the gene: LotjaGi1g1v0390900_LC LjG1.1_chr1 87457680 87470419 +
2 domain predictions
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LotjaGi1g1v0390900_LC.2
n.a. Protein FAR1-RELATED SEQUENCE 11; TAIR: AT1G10240.1 FAR1-related sequence 11; Swiss-Prot: sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11; TrEMBL-Plants: tr|A0A151TCH1|A0A151TCH1_CAJCA Protein FAR1-RELATED SEQUENCE 11; Found in the gene: LotjaGi1g1v0390900_LC LjG1.1_chr1 87457680 87470419 +
2 domain predictions
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LotjaGi1g1v0443900.1
n.a. Protein FAR1-RELATED SEQUENCE 3; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|K7MC87|K7MC87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0443900 LjG1.1_chr1 94156938 94162962 +
2 domain predictions
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LotjaGi1g1v0596300.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G12850.1 Far-red impaired responsive (FAR1) family protein; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|I3SMC5|I3SMC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0596300 LjG1.1_chr1 113575621 113580261 +
2 domain predictions
 –