Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0679100 |
| Transcript ID | LotjaGi1g1v0679100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAB6-interacting golgin (DUF662); TAIR: AT2G36410.2 transcriptional activator (DUF662); Swiss-Prot: sp|B1H222|GORAB_RAT RAB6-interacting golgin; TrEMBL-Plants: tr|I3SUV0|I3SUV0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0679100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124590070..124593022) extracted from Lotus japonicus Gifu genome v1.2.
CTGGGAAGCAAAGAACGTAAGTTGGAACAGGTCACCCACAAATTGTTTAATACCACTAATAATTTACTATCACCAGTGCT TGTTTGGAAAAGAAGAAAAGAAAAGAAAAGATATAGAAAGTGAGATATTTATTCTAAGCCAAGCTGGGATTATATATTAT CTTTATATTCTTCATTACATAGATTTCTTTTTTAATACACAATAAAATATTGACAGTTTTTGTTTGGTCCATAAAGGCAA AGGGTAAGGTAAGCTGCTAAGCTGGCTTGACACTTGAAAGGCCTTAAACTAAGGGAAACCCCAGAGACCATAAGAAGGAA CAGGGGAAGGCAAAAAAAACAGAGCACTGAAGAAAGAAGCCTCATCATTTCAAAACCAAAACAAAGCACAAAGAAAAAGA AAAAGAGAAAGGGAAAGAAAGAGAGGAAAATAAAGAGGAGAATTCAAAGAAGAAGGGTTTCTAGCTGTTGAACAAGATGC AGGGTGGTGGTGAACAACAGAACAACCAGTTGGTGGTGCAGAACTCAGGGAGTCTCAGCTTCAGCAGCCAAATGTCCAAG GAAGATGAGGAGATGTCAAGGTCTGCTCTTTCCAATTTCAAGGCCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGT TAGAGAGAAGGTTCAGCTCCAGTTGGGTCGGGTTGAAGAAGAAACCAAACGTCTTGCTACCATTCGTGAGGTTTGTTTTT CAGATTTTACTATGACTATGATTTCTCACCAAAATTTCAGCTTCACCTAACTGGGATACCCCTTTTGGTTCTTGATTTGT TTGTTGTTAACAGAATTTGTTTTGGCCTTGTATGGAACATAAAGTTTTGAATTTTTGTTTCTGAGTTAACAAGATTTTGC TCTGTTTTCATGCTTATTTTTGTGTATAAATTGGGTTTTCTTGAAACCAGGGGTTTGCAGAACATCTAGAGCACTTGAAT ATACCAGATCTGTGGTTTTCTTCACGAGACAAAGTGATTTTGCAACAAAAAGAAACGTTATCTTTTTCTTTCTGTTGTGG TTTTTGAGGAAAAGAATTCAAAATTTGAACTTTGTTATTTACCCTGAATTTATGTTCTTGTCAGATAGTAGTATCAGGGT ATGAACCAAATAATTTAATATTTTGGCTTTCTAGAACTTTCTTGGCCCCCATGATTTTTCCTTTTTTTTTGTTAGAAAAT AAAAAATATCCTATATAGTCTGTGTCATGTAGACAGGATGGAATTGGAGTTTAATAAATTTTTAAATATTTTGCTTAGAT GTTTCTTTGTCTGTAAATTTTGTTATTTAGTGTCCCTTTGATTTGTGATTGAACTCAACCTGGTTCACATTTAAATCAAT GTGACAAAATCTTATTTCTATGTTGATGTGTTGAGATGTGTGTTTTCTTGTTTGTGCTGATGCCTAATTGAATAATTCCA TATTGATGTGTAATTGAATAATTCCAAACTTCTGATATGAATATCAGGAGCTTGAATCCCTAGCTGATCCAATGAGGAAG GAAGTTGCAATTGTCCGAAAAAGGATTGATTCTGTAAACAAGGAATTAAAGCCACTAGGTCATACCTGCCAGAAGAAGGT GAGGCTTATTGAATTTCATAGGAACTGATAGTACACCTTGTTTGATGATTATGTACTCTCCATACTATTAGCATATCTGG ATCAACTTGTTTTTCTCAGAATCAATTTAGCACCTAGAAGCTACTCTACTCACATAAGTTTCTCCACATAATTGATTTTG ACTTTACAATCAATTGTAGAAAGTTTTCCAAACATGCTATCTAGTATCTATGGGTTATGACATTTTTTAGGGACACCATT GAAATTGAGTTTTGTATACATTGCTTTACAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGG AAAAAGTACAGCTAATCACCAGGCTAATGGAGGTGAGTGACGTGAGTCTCACATTCCAGATTCTCATTGCAAATGAATTA TTTGAATACATAACTTTCTTTATCCTGACATGTGGGATTTTCTGTTGTTATCAGCTGGTGAGTGAAAGTGAAAGATTGAG GATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCCTTGAAATGATTCTGCTGCCAACTGCTGCTAATGACTCTCT GATTAGGCTTGTGTGGTATATGAAAGATGACATAGTAGTATATTTTATATGAATGTATGGGTTGGTCTTGTGCTTGTGTA GTTCTGTGGTGTCGTTATTTGTTTGTTTAACTAGCATTTGATGATGGGACATTAGCTAGTTTAGGAGGGCTATACCCTAC AAACAAACAGGCTTGTAACTATATACTTGCATTCTGTTGTCAATTTTTTTACCCTGTCAATTCTCTTTTCTCTGCTTTGT TCTTCTCATTTAATTTATTGATGTAATTTGAATTTTGTTGCCAAGAAGTTTGGTTCCAAGAAAGAAGCCCTGGTGTTCTA TTAGTATTTGATCTATCAATACGAGCTGAGTGTAACATTATGCACTCATCTAGTGTGTTTGAATATTTGTTGAGTGGAGC GTGAGCGCACCTTCATTAATTTCATAACAGTTATATTCATTTTTGTATCTTAACGTGTGTGCTATTATCAGTTTACGATG ATGCAAACAAATATACAAACAAATCCTGTGTTTGGTTTGAAAGTTCGAATCAATACCAATATGATTTCATGTATCTTGAT ACACTTATAAAAAAGCTAGAATTTACCTCATTAAGTTTAACGTGAATAAGCAAAACATGATTGTGACACGTTGACTCCAA CGGCCAACATGAATCCACATATGCAATATGTGTGCTTTTAACCACTCATTTACACCAGAAAGATGTTATTGAGATAAGTT TATTATGGTTTACACATGCTAATTTACTTCTATGGCAAAAGTTGTTAATGCTCTAAAATGAGATTATTTAACC
CDS sequence (LotjaGi1g1v0679100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGGTGGTGGTGAACAACAGAACAACCAGTTGGTGGTGCAGAACTCAGGGAGTCTCAGCTTCAGCAGCCAAATGTC CAAGGAAGATGAGGAGATGTCAAGGTCTGCTCTTTCCAATTTCAAGGCCAAGGAGGAAGAGATTGAGAGGAAGAAGATGG AGGTTAGAGAGAAGGTTCAGCTCCAGTTGGGTCGGGTTGAAGAAGAAACCAAACGTCTTGCTACCATTCGTGAGGAGCTT GAATCCCTAGCTGATCCAATGAGGAAGGAAGTTGCAATTGTCCGAAAAAGGATTGATTCTGTAAACAAGGAATTAAAGCC ACTAGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAG TACAGCTAATCACCAGGCTAATGGAGCTGGTGAGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAG AACATAGATTCCTTGAAATGA
Protein sequence (LotjaGi1g1v0679100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGGGEQQNNQLVVQNSGSLSFSSQMSKEDEEMSRSALSNFKAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREEL ESLADPMRKEVAIVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITRLMELVSESERLRMKKLEELSK NIDSLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 6 | 165 | 160 | 2.6E-89 | – | |
| PANTHER | 6 | 165 | 160 | 2.6E-89 | ||
| Pfam | 15 | 164 | 150 | 2.4E-76 | ||
| MobiDBLite | 28 | 47 | 20 | - | – | |
| Coils | 38 | 58 | 21 | - | – | |
| Coils | 112 | 132 | 21 | - | – | |
| Coils | 155 | 166 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0679100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…