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LotjaGi1g1v0750300.3

Overview

Field Value
Gene ID LotjaGi1g1v0750300
Transcript ID LotjaGi1g1v0750300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-citrate synthase; TAIR: AT1G09430.1 ATP-citrate lyase A-3; Swiss-Prot: sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3; TrEMBL-Plants: tr|A0A151TX29|A0A151TX29_CAJCA ATP-citrate synthase; Found in the gene: LotjaGi1g1v0750300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:132264442..132266841) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGAGGGGAATTGGATGACACGGCTGCATTCAAAAACTTCAACAAGTATAATCCTTCGATATTGATGTTTCATAGTGT TTTTAATTTTGAAGTGAAGGAAATTTATCTATTACTGCACACAACTAGATGTTATCCAATCTATATATTGTTATGCATTC AGGTGGGGTGATATAGAGTTTCCATTGCCTTTTGGAAGAGTTCTAAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGA CAAGGTATTTTATTTGTATCTGTGTGGTCATTATCTTATTAATGCATGCAATTTCTTTCTGAGCATGCCTTGAGGGAAGA ATTGTTTTTTATTCTTTAAGCTACTGCATCTAGAATTGTTTTTTAGCCAACAAGGCTCTCTTTGCAGACACTTCTTTCGA AAGATGCATGCTAGAGAACAGCCTCTCCATGATCTCACTTGAAGAATTTAGGCCTAAATCAAAGAAATTCAGGGCCTGGG TATATCAATGCACAAAAAGTGCAAAGCCTTTTTTTTAGTTTGAGTGCCTAGTCTCTCTAAAGTCCAAGCCAAATCCCAGA CTACCTTTACCAATCACACTCCCTCAGAATATAATCTCCCCCTCCAACTGACCCACATGAGTCCGTCCACTCACTCACTA TGCGGTTAGTTATTCTTTTCTTTCTCCTAGGCTTTATCAAGTGCGTTAGTGCATTACACCTCTTTCTTCTACACCTTAGT AATTGTTGGCTTTGGGTCGCATCATCTCTCCACCCTTCAAAAACACACCTTGTCCCCCCAGTTGGAAATCAGGGAAATGT TTTCAAACAATGCTTCCCGAGGTTTTTCACAAATAGACTAGTGTTTCCATTTGGTCAAAACATCCACAGTCCCCTGAGCA TAAATACATCAAGTACTCAACAGTCAAGTTTGTCTTGACAGTTTATTTTTCATAGGCTTTACTTGCACTTGTTATGCTAA TGATGATCTTGGAGCACCTTCTCAACTATGCACAGCATAGGGCACTTTTGCACAGTGAGAACTAGGAAATCCTTTAAAAA TTGAAAAAAGTTATCAGAATTTTAAGTATTTTCAGTCATTCTTATGGAATTCCGTACATAGTTTTGCTGACCTCATATGA TAAATATTGCCTAAATAAGTGGTAGCCTGGATAGTTAGTATTGACTATTGAGCACTAAAATACGTGACCTTTATAACTTG CACCTTTCAGTGCTATTGTTGTTGCAATGCCTTGTTTTTGTAAAAGTAATTCTTCCCTGTTTAATAATTAAATGTAACTT TCGTCTTTTATAGGTTGGTAAAATATATGCTTTTTCATATTGCAGACAAGTGCATCTTTGAAATTTACTGTATTGAATCC AAAAGGACGCATCTGGACAATGGTGGCTGGAGGTGGTGCAAGTGTAATTTATGCTGATACTGTAAGTTGATTTTTTATGG GTTTATTTCAAGCGGAAAATGTGAACAAAGGGCCACCTCAAACAGTGATTACTGGGAGGTTTGCTTTTAGTAGGTATTTT TGGTGGCTTATCTACCTTTATTTTCTAGGTTGGAGATTTAGGCTATGCATCCGAGCTTGGCAACTATGCTGAGTATAGTG GAGCTCCAAATGAGGAGGAAGTGTTGCAGTATGCAAGAGTCGTAATAGATGTAAAGATTCTAACCACTCTTTTTCTGTTT CCTTATGACTTAAATTTCACTATATGATCATCGCTAGTGGCCTCCATCACTACGTCACTTGAAAATTTGTGCTCTTGACT GTGTTGCAGTGTGCTACTGCAGATCCTGATGGCCGTAAAAGAGCCCTTCTTATTGGAGGTGGCATCGCAAACTTCACTGA TGTTGCTGCCACATTCAGTGGGATTATTCGAGCCCTGAAAGAGAAGGTATGATATTGCTATTTATGTCCTTATTCCACTT GCAGTTGTTGATTTGATAGTTAATGAACTTGTTTCCAACCGCTCTACAGGAATCAAAGCTTAAAGCAGCAAGAATGCACA TCTTTGTCAGAAGAGGTGGTCCAAATTATCAGACTGGTTTGGCAAAGATGCGTGCATTGGGGGAGGAATTGGGAGTACCA ATTGAGGTAAGGGTGGCAATCATTTTATGAATCTTGTAATTGAAGAGTTCTTAACCAGTTAACTTTGAGGTTTTGGCATT AAGCCTCAAAGATTTTAAAGGAGAAGTGGTGGAGTGCCTACATTGGAGTCTTGAGTAAAGTGTTCTCGAGTCTCTACCAC TGTGAAAAAACAAAAACATTGATATGATAAATGCAGATTTTCTTTGTGTCTATTGTTTGTATAATTGTGGCAAATCTTGT GGTTCCAGGTTTATGGGCCGGAGGCCACAATGACTGGCATCTGCAAGCAAGCTATTGATTGCATCATGTCTGAAGCATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0750300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGGGGAATTGGATGACACGGCTGCATTCAAAAACTTCAACAAGTGGGGTGATATAGAGTTTCCATTGCCTTTTGG AAGAGTTCTAAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGACAAGACAAGTGCATCTTTGAAATTTACTGTATTGA ATCCAAAAGGACGCATCTGGACAATGGTGGCTGGAGGTGGTGCAAGTGTAATTTATGCTGATACTGTTGGAGATTTAGGC TATGCATCCGAGCTTGGCAACTATGCTGAGTATAGTGGAGCTCCAAATGAGGAGGAAGTGTTGCAGTATGCAAGAGTCGT AATAGATTGTGCTACTGCAGATCCTGATGGCCGTAAAAGAGCCCTTCTTATTGGAGGTGGCATCGCAAACTTCACTGATG TTGCTGCCACATTCAGTGGGATTATTCGAGCCCTGAAAGAGAAGGAATCAAAGCTTAAAGCAGCAAGAATGCACATCTTT GTCAGAAGAGGTGGTCCAAATTATCAGACTGGTTTGGCAAAGATGCGTGCATTGGGGGAGGAATTGGGAGTACCAATTGA GGTTTATGGGCCGGAGGCCACAATGACTGGCATCTGCAAGCAAGCTATTGATTGCATCATGTCTGAAGCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0750300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRGELDDTAAFKNFNKWGDIEFPLPFGRVLSPTESFIHSLDDKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLG YASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIF VRRGGPNYQTGLAKMRALGEELGVPIEVYGPEATMTGICKQAIDCIMSEA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23118:SF25
1 210 210 3.2E-138 –
PANTHER
PTHR23118
1 210 210 3.2E-138 –
Pfam
PF16114
28 204 177 3.8E-82
IPR032263
Gene3D
G3DSA:3.40.50.261
31 191 161 8.0E-67
IPR016102
SUPERFAMILY
SSF52210
46 190 145 4.58E-20
IPR016102

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0750300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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