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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0764200 |
| Transcript ID | LotjaGi1g1v0764200.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT2G47580.1 spliceosomal protein U1A; Swiss-Prot: sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A; TrEMBL-Plants: tr|A0A151TXR0|A0A151TXR0_CAJCA U1 small nuclear ribonucleoprotein A; Found in the gene: LotjaGi1g1v0764200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133699803..133703620) extracted from Lotus japonicus Gifu genome v1.2.
ATGACAGAAGCGAACGCGGGTCCTGAAACCCCTCAGAACAACACCATCTACATCAACAACCTTAATGAAAAGATTAAGAT TGAAGGTCTATTCTTCATTCCCTGTTTCCTGTTTCTTCGAATCAACGCATGTTCTTCTTGTTTTGATAATTCAGTTTTTT GGATGCAGAGTTGAAGAAATCTTTGCACGCTGTTTTCAGTCAGTTCGGGAAGATACTTGAGGTGTTCGCTGCCAAGACGC TCAAGCACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATCTCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTC CCCTTCTATGACAAGCCCATGGTACCTACCATATACACTTGTTTTCTACTATTTATTTATTTGTTGTGTTTGGTGTAGTT TTAATTAGGAGTAACTTCACTAGGTAGAATTATGTGGTTTTGTTTGCTTCTAATATTTAATAATGCTACTTATTAGACTT GAAATCGATAACAATCGTCATCTTGGCTTAGGTTTCATGTCAGAAAATTGTTAGAAATTTAGCATAACTTATGTGCCCAC ATGATTAGAGAAAGAGAAGAACAGCTTTCTAGAACATTGCCTTATCTAGTAGCAACTCTATTCTCCTCAATAGATGTTAG ATTATTCATTTGAAATGGACTATAAGATGATAGGAAGAAGTCGAAATGTCGAATGTCTGAACATGTCAAATGTAGCACGA AATGGCTATTGCCTTGTGTCAAGTGGCTATCGTGTTTGCTATGCAGTTACTGGTGTAAGTTCTTTTTATCAGTTAGGCTG CCGGTCCCTCACCTCTCCTCACCGAACAAAATAGCAAGATGTCTTCTTGGTTGGAACAATGGATTTTAGTTATAGAAATA GTCTAGGAGGACTCTTTTAAAGACTGATGCTAAGGACTAGCTGATCACAACGTCTTGATGTTTATCCTTAATGCTGAGGA TCCATTAACTACAATTGTGATTAATTTGATAAAGAATCTTCAGCGGTTTGCCATTTTGAGCTAAGTAAACTATCAATAGG TCCCAATGGAAAAATTTCACTATAATTCTATTGAACTAGTTTATTTGTTTGTTTATGAATGGGGATTACCAACATGCATG GCTGAGGTTAATTGTTGGGCTGAAGGTGGTGATTAGGTGAAGCCCTTCCCGGAATAGGGATTCTAGGATTTGAGCTCTTA ACAGAACATTGCATGTAATTATGTAAAGTTATCTTGTGATCATAATTTGGAGTCGACAATAATTGCAATTTGCAACTAAC TATTGGTGGGTTCTATTGAACAAGCTGTAACCGCAAGTTCATGGATCATATCAGATTTTGGATTTATTCAGCAGAGGAAA AAAAAAAAAATAGTTTTTTGTGGTGCGCGATATGTCTTCATGATGTGGCTTTGGTAAATCAACGAATATTTTTATCTGAA TGTTCTCAGGCTATGCAAGTTGTTTTTATATCATTTTCTGCTACAACCATCAATGCTATTTCTAGCTCTCTTTGTGCTGG TGGGGTTTTAATTGTCCGTAAATATGATATATTTGCTAGCATGTGATGTGATATGGTTCAATGGCCTTATTAGCTTGACA TGATAGATTGCTTGGACATTTAATTCAACAAGTCCTTATTAGAAATGTTTTCATAATTTTTCTCTTTAGTCACTGCTACT GATTCAAATATGCTGTTTTTCCCCCTGTTCTATGCAGAGAATACAGTATGCAAAGGCTAAATCTGATATCATAGCAAAAG CGGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGAGGACAAAGGTACAACACTCTGAGCTTTTTTTTAATGG ATATTAAACTGTATGTTTGAACCCACATTTGAACAAAAACAAAGTAAACTAAAGCTTATTTCCTCTTCTAAATTGGGGCC CAAGGCACTAAATGCCCATTAATGACAGTAAGGGCCAATAGATTTCGTGGAATTGTCTCCCCCTTTAAACTAAATGATTT GTACTTTTTCCTTTTTTTTTTGGGTTGGAGGAGGGCCCTTTAGGGTTCAAATCGATTTCACACTTTTGTAATTGATAATA TCGAAGAAGGAAAAGTTATAATAAACGTGAACTGTGACTCTCACCTACCTCTAGGCACCTAAGGCAAGTGTAGTTTTGTA TTTCACCAATTTGTGTAATTTTATGTATCCCCCTGCTTGGGATAGTCTTATACAATACTTTTGAGCATCAAGGATGGATG CAACTCTTTTGCTCAAAAGCTGTGTAGTATGGACCATATAAGGTTACTTGTTTTATTTAATGCATTATGTAATCAATAAA TGTGAGTCACCTTGTTTCATTTTGTTGCAGGCAACAAAAAACGGAAGGACCAAAATGATGCTAATTTAGCTGGGATGGGT CTTAATCCTGCTTATCCTGGTGCTTATGGTGCAACACCTGTAAGTTTCTTCTGCTGTTTTAATTTACATTTTTGGTCAAT GATCATGTTAACAATCCATTAGTATGCTAGTCCTTTGTGTCATTTGAGTTGAGCAACTTTAGAGTTCTTTCTATTTTATA GTACTTTGTCTCTTTTTTTGCCTTTCAAACATATTTTTGATTTTCTGGTAGAAGAAGCCTTCAGGAATAGAAAACAAAGA AAATTTCTTCCAGTAAAAAAGTGAGATAGGCAGAAATTAAGGTCATACTCTATCTTGTTTCAAAGCAAATTATTCAAATA CACCAAAAAGATGAACAATTTTGTTTCATGTTCTTCATGGCAACCATGTTTACTTAGTGTTTGGTAGACAGTTAAGAACA TGGCATATGGATTCTATTCTATGTTTTGTATTTCTTAAAAATGGAACATAACTGGACATAAGAGTCAAAAAATGGTACAC GATGGTTCCTTAAAAAGGGGTTGAATCAATGAAAACATAGTAGAACACTATTAATAACTTTTTATTGACAAAGTACCACT CATCATTCTTCTACTGCTCCTAAGGTTATGCGGCTTGAACAGTCTCCCCATTTCAGTAATCTCACTGCAATCCCTTTTCC TTCTCTCACTCCATTCATTTCTTCTCTTTAATTACTTCACACTTTTCACAACAGCACGTCATCACTCATCACCAAAGAAG AAAAGCTACAAAACTCACCAAATTTTCTTCTTTACCAAGCAGTAACCATTACAGATTATTATTACAATTTATTTATCTTA TTTCTTCCTCAACTTTTTTAGTTCAAGTTTGGTAAAAGATGTATTTGAAGAGTCAAAATGCTCCGGAAACATATTGAGAT AGAATCCATGTACTAACCCAACTAAACGTTAATCAGAATAAGGATATATGTAATTGAAGACATTGTTCTGTTTTGTTCAT TTATGTCTTGAAAACAGAACAATACATATGGCTCTGTTCTATTCTATAATTACTGATTGCGTTTACAAGACATTATTAAA TTGTATTCCATTCTGTTATGTAAGCATACCAGACACTACATTAGCTACTTCTACATTTGTTGCTTGCCCTTTCTAATATA TCATCTCTCCCAGATACCTTATCCAGGTGGTTTAAAATCTATGGTACCTGAGGCTCCTGCGCCTCCCAATAATATTCTCT TCATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTT AGAATGGTTGAAACAAAGCCAGGTATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACAGTGGCCATGCAGGCCCT GCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAGAAATAG
CDS sequence (LotjaGi1g1v0764200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAGCGAACGCGGGTCCTGAAACCCCTCAGAACAACACCATCTACATCAACAACCTTAATGAAAAGATTAAGAT TGAAGAGTTGAAGAAATCTTTGCACGCTGTTTTCAGTCAGTTCGGGAAGATACTTGAGGTGTTCGCTGCCAAGACGCTCA AGCACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATCTCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTCCCC TTCTATGACAAGCCCATGAGAATACAGTATGCAAAGGCTAAATCTGATATCATAGCAAAAGCGGATGGTACTTTTGTTCC TAGGGAAAAACGTAAGAGGCATGAGGACAAAGGCAACAAAAAACGGAAGGACCAAAATGATGCTAATTTAGCTGGGATGG GTCTTAATCCTGCTTATCCTGGTGCTTATGGTGCAACACCTCATCTCTCCCAGATACCTTATCCAGGTGGTTTAAAATCT ATGGTACCTGAGGCTCCTGCGCCTCCCAATAATATTCTCTTCATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCT GCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGTATTGCCTTTGTGGAAT ATGGAGATGAGATGCAATCCACAGTGGCCATGCAGGCCCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATA ACTTATGCCAAGAAATAG
Protein sequence (LotjaGi1g1v0764200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEANAGPETPQNNTIYINNLNEKIKIEELKKSLHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSSASNALRQMQGFP FYDKPMRIQYAKAKSDIIAKADGTFVPREKRKRHEDKGNKKRKDQNDANLAGMGLNPAYPGAYGATPHLSQIPYPGGLKS MVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLI TYAKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 4.0E-145 | – | |
| PANTHER | 1 | 245 | 245 | 4.0E-145 | – | |
| Gene3D | 7 | 105 | 99 | 2.4E-29 | ||
| SUPERFAMILY | 11 | 232 | 222 | 6.83E-27 | ||
| ProSiteProfiles | 14 | 93 | 80 | 14.812 | ||
| SMART | 15 | 89 | 75 | 4.3E-14 | ||
| CDD | 15 | 92 | 78 | 5.94063E-50 | – | |
| Pfam | 16 | 86 | 71 | 4.3E-10 | ||
| MobiDBLite | 103 | 127 | 25 | - | – | |
| MobiDBLite | 103 | 131 | 29 | - | – | |
| Gene3D | 165 | 245 | 81 | 1.8E-20 | ||
| CDD | 169 | 241 | 73 | 1.07207E-39 | – | |
| ProSiteProfiles | 171 | 245 | 75 | 12.356 | ||
| SMART | 172 | 241 | 70 | 2.4E-10 | ||
| Pfam | 173 | 232 | 60 | 1.2E-12 | ||
| Coils | 243 | 245 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0764200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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