Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0790400 |
Transcript ID | LotjaGi1g1v0790400.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151TXX1|A0A151TXX1_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi1g1v0790400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136219209..136222115) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGAGAAAGTGGGAGAGTTTTATAACATGGACAAGGTTATAGAAGAATTTGAGTCACTCACAAAGGATGCAGGAAA GGTTCAGAGAGAAACTCTCAAGAGAATTTTGGAGGATAATGCATCAGCTGAGTATTTGCAGAATTTGGGCCTTAATGGGA GAACTGACCCTGATAGTTTCAAGGCCTGTGTTCCCATGGTTACACACAAAGATTTGGAACCTTATATCTACAAAATCATT GATGGCGAATCTTCTTCTATTCTCACTGGAAAACCCATCACAACTATGTCTTTAAGGTGTTGTTTTTCGCTTGTTTTTTT TATTCTTTTCTTCATCTTATAGCATGCTCAAAATCAATTCTGGTACTAAGTATTTTCAAAGTTTCTAAGTCTAAGAATGA TATTTCTTGCTGCAGCTCTGGCACTACTCAGGGGAAGCCAAAGTATCTCCCATGGAATGATGAGTTGTTTGAAACCACCA TGCAGATTTATAAGACCTCTTTTGCCTATAGGAACAGGTAATCCAGAATACTTCATTTCCTAAACTTGTTTTCAAGTTTT AAGATGATTGATTCTACAGTGAAATGCTCTAGAATCACTTTTGGTTCAAACTCAAGCGCACATACTTAATTAGCAGGCAT TCGGGCTGAAAACTTATAAATACGGCGCTAAGGCCTATGAGCATAAAAGGATACACTCGGACACCATTTTTGACAACTAG CATTCTAGCTCAAAAACTTATGGCACTAGGGTCTAAAAACTTACTAGGCAGTCATCAGGGCCCAAAAACTTATAAATATA GCGCGTAAGCCTATAAGTTTTAGCTTCTGAGTAAACATGTCTTAGATTATGTGCAAATCGTGACACTAAAAACATGTTTT AAATTGTTATTTTGTCTTGTTCCTTCTTCTGCAGAGAGTTTCCTATGAAAAATGGGAAGGCTTTAAGCTTTATCTATGGT AGCAAACAGTTCAAAACAAAAGGGGGTCTGGTAGCAAGAACTGCTACAAGCAATTTGTTTCGCAGTCCGGGTTACAAGCA TGCAATGAAGGCATTGCAATCTCAATGCTGCAGCCCAGATGAAGTGGTATTTGGTCCTGATTTTTTCCAATCCTTATACT GCCACTTGCTATGCGGCCTCATTTTCCGCGAGGAAGTTCAATTAGTGTCTTCTACATTTGCTCATAGCATCGTCCATGCT TTCAGAACCTTTGAACAAGTGTGGGAAGAGCTCTGCACTGATATCAGAGAAGGGGTTCTCACAAGCAGAGTTACAGTGCC ATCTATTAGAATGGCCATGTCTAAAATACTCAAACCAAATCCAGAACTAGCAAACTTGATTCACAAGGAATGTGTTGGGT TGAGCTATTGCAACTGGTATGGTTTGATACCAGAGCTTTTTCCCAATGCAAAGTACATTTATGGCATCATGACAGGGTCA ATGGAGCCATATTTGAAGAAACTGAGGCACTATGCAGGGGAGATGCTGCCTTTGTTGACTGCTGATTATGGATCTACTGA AGGTTGGATTGCTGCAAATGTGAACCCAAAACTTCCACCTGAAATGGCTACTTATGCTGTGTTGCCCCATATTGGTTACT TTGAGTTCATTCCATTGACAGAGCTAGAGAATGATTTTTTCCTTTGCATTGATCCAAATCCAGTAGGACTCACTGAAGTC AAGATAGGTGAAGAGTATGAAATTGTTATGACCAATCCAGCAGGTACTTAATTACATTGATTACTACTACTATCAAGTGG AATACTTTATTTTTTCAACATGGATCCTTGCAGCTCCATGTTTCAAATTCTTTACCATTAATTCTTATAATAAATGGTTC TAATAAATCTAAATCAGTAAAAAAATTAAATTGGTCAAAAGTTTTTAGCACATGTCATTTGCTGTTGCAGAAAGACAGCA TGAGTTTTTCCCCACTTTGCATTAATGGATTTGGACTAAGGACTAAAGTTACTTGCTTCTTTCATATTGACCAGTTGAGT TCTGTCCAGTAGGAAAAGAAATGTTTGTTTTCCATATAAAACTTCTAATATGCCTCATGTGGCCACGTGAAAGAATTTTA TGTGACATAATAATAAGCATAAATTGATATATTAAGGCAACAAATTCTTTTGACATCAATATGTAGGGATATGTAGGATT TTATATTTGCAATCAACATTACAAAGATTTTTGCACGTGGGCTTATAGTTTAGTGATGTTACCATCATGATTTGTGTAGT TGCATCATAAGCAGATAAAAAAATGTCGCATGCACCCAGAGCATAGTCCTTCACTTTAGTTGTTCCAAACTAATTAATCA TCACGAAATAGAAACTGATCCAAACATGCATGTTACAAATTGCAGGTTTGTACCGGTATAGGCTAGGAGATGTGGTAAAG GTGATGGGGTTCCATAACTCGACTCCGGAACTCAAATTTGTTCGCCGGAGCAGCCTTCTGTTGAACATTAACATTGACAA GAACACTGAGAAGGATTTGCAGCTAGCTGTGGAAGCAGCTGCCAAATTTTTAGCAGAGGAGAGAGTGGAAGTTGTTGACT TCACTAGCCATGTTGATTTAACCACAGAACCAGGTCACTATGTAATTTTCTGGGAAATCAGTGGTGAAGCAAGTGAAAAA CTACTCAGTGAATGCTGCAATTGTTTAGACAAGTCTTTCATTGATGCGGGCTACACTAGTTCTCGCAAAGTTAACTGCAT TGGGCCCCTTGAACTCCGAGTTGTTAGGAGGGGAACATTCCAGAAGGTTCTTGATCATTACCTTGGATTAGGAACCGCTG TTAGTCAGTACAAGACACCAAGATGTGTTGGTTCTTCAAACAGCAGAGTGTTGCAAATCTTGTGTGACAATGTTGTTAAG AACTATCTCAGTACTGCTTTCAATTGA
CDS sequence (LotjaGi1g1v0790400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAGAAAGTGGGAGAGTTTTATAACATGGACAAGGTTATAGAAGAATTTGAGTCACTCACAAAGGATGCAGGAAA GGTTCAGAGAGAAACTCTCAAGAGAATTTTGGAGGATAATGCATCAGCTGAGTATTTGCAGAATTTGGGCCTTAATGGGA GAACTGACCCTGATAGTTTCAAGGCCTGTGTTCCCATGGTTACACACAAAGATTTGGAACCTTATATCTACAAAATCATT GATGGCGAATCTTCTTCTATTCTCACTGGAAAACCCATCACAACTATGTCTTTAAGCTCTGGCACTACTCAGGGGAAGCC AAAGTATCTCCCATGGAATGATGAGTTGTTTGAAACCACCATGCAGATTTATAAGACCTCTTTTGCCTATAGGAACAGAG AGTTTCCTATGAAAAATGGGAAGGCTTTAAGCTTTATCTATGGTAGCAAACAGTTCAAAACAAAAGGGGGTCTGGTAGCA AGAACTGCTACAAGCAATTTGTTTCGCAGTCCGGGTTACAAGCATGCAATGAAGGCATTGCAATCTCAATGCTGCAGCCC AGATGAAGTGGTATTTGGTCCTGATTTTTTCCAATCCTTATACTGCCACTTGCTATGCGGCCTCATTTTCCGCGAGGAAG TTCAATTAGTGTCTTCTACATTTGCTCATAGCATCGTCCATGCTTTCAGAACCTTTGAACAAGTGTGGGAAGAGCTCTGC ACTGATATCAGAGAAGGGGTTCTCACAAGCAGAGTTACAGTGCCATCTATTAGAATGGCCATGTCTAAAATACTCAAACC AAATCCAGAACTAGCAAACTTGATTCACAAGGAATGTGTTGGGTTGAGCTATTGCAACTGGTATGGTTTGATACCAGAGC TTTTTCCCAATGCAAAGTACATTTATGGCATCATGACAGGGTCAATGGAGCCATATTTGAAGAAACTGAGGCACTATGCA GGGGAGATGCTGCCTTTGTTGACTGCTGATTATGGATCTACTGAAGGTTGGATTGCTGCAAATGTGAACCCAAAACTTCC ACCTGAAATGGCTACTTATGCTGTGTTGCCCCATATTGGTTACTTTGAGTTCATTCCATTGACAGAGCTAGAGAATGATT TTTTCCTTTGCATTGATCCAAATCCAGTAGGACTCACTGAAGTCAAGATAGGTGAAGAGTATGAAATTGTTATGACCAAT CCAGCAGGTTTGTACCGGTATAGGCTAGGAGATGTGGTAAAGGTGATGGGGTTCCATAACTCGACTCCGGAACTCAAATT TGTTCGCCGGAGCAGCCTTCTGTTGAACATTAACATTGACAAGAACACTGAGAAGGATTTGCAGCTAGCTGTGGAAGCAG CTGCCAAATTTTTAGCAGAGGAGAGAGTGGAAGTTGTTGACTTCACTAGCCATGTTGATTTAACCACAGAACCAGGTCAC TATGTAATTTTCTGGGAAATCAGTGGTGAAGCAAGTGAAAAACTACTCAGTGAATGCTGCAATTGTTTAGACAAGTCTTT CATTGATGCGGGCTACACTAGTTCTCGCAAAGTTAACTGCATTGGGCCCCTTGAACTCCGAGTTGTTAGGAGGGGAACAT TCCAGAAGGTTCTTGATCATTACCTTGGATTAGGAACCGCTGTTAGTCAGTACAAGACACCAAGATGTGTTGGTTCTTCA AACAGCAGAGTGTTGCAAATCTTGTGTGACAATGTTGTTAAGAACTATCTCAGTACTGCTTTCAATTGA
Protein sequence (LotjaGi1g1v0790400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEKVGEFYNMDKVIEEFESLTKDAGKVQRETLKRILEDNASAEYLQNLGLNGRTDPDSFKACVPMVTHKDLEPYIYKII DGESSSILTGKPITTMSLSSGTTQGKPKYLPWNDELFETTMQIYKTSFAYRNREFPMKNGKALSFIYGSKQFKTKGGLVA RTATSNLFRSPGYKHAMKALQSQCCSPDEVVFGPDFFQSLYCHLLCGLIFREEVQLVSSTFAHSIVHAFRTFEQVWEELC TDIREGVLTSRVTVPSIRMAMSKILKPNPELANLIHKECVGLSYCNWYGLIPELFPNAKYIYGIMTGSMEPYLKKLRHYA GEMLPLLTADYGSTEGWIAANVNPKLPPEMATYAVLPHIGYFEFIPLTELENDFFLCIDPNPVGLTEVKIGEEYEIVMTN PAGLYRYRLGDVVKVMGFHNSTPELKFVRRSSLLLNINIDKNTEKDLQLAVEAAAKFLAEERVEVVDFTSHVDLTTEPGH YVIFWEISGEASEKLLSECCNCLDKSFIDAGYTSSRKVNCIGPLELRVVRRGTFQKVLDHYLGLGTAVSQYKTPRCVGSS NSRVLQILCDNVVKNYLSTAFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 581 | 575 | 0.0 | – | |
PANTHER | 7 | 581 | 575 | 0.0 | ||
Coils | 11 | 31 | 21 | - | – | |
Pfam | 17 | 559 | 543 | 1.2E-188 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0790400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…