Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004993
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 49 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.141s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0102309.1
n.a. GH3 family protein [Populus trichocarpa] gi|224068322|ref|XP_002302704.1| chr0 43519694 43522797 +
3 domain predictions
 –
Lj0g3v0250979.1
n.a. PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] gi|356547047|ref|XP_003541929.1| chr0 130124058 130127124 +
3 domain predictions
 –
Lj0g3v0253399.1
n.a. PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Cicer arietinum] gi|502155268|ref|XP_004510013.1| chr0 131568867 131571102 +
3 domain predictions
 –
Lj0g3v0253409.1
n.a. PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Cicer arietinum] gi|502155268|ref|XP_004510013.1| chr0 131568867 131572657 +
3 domain predictions
 –
Lj0g3v0311439.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.11-like [Brachypodium distachyon] gi|357116086|ref|XP_003559815.1| chr0 162628114 162628898 +
3 domain predictions
 –
Lj0g3v0315679.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cicer arietinum] gi|502146701|ref|XP_004506568.1| chr0 164780611 164781697 +
3 domain predictions
 –
Lj0g3v0328539.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] gi|356544912|ref|XP_003540891.1| chr0 171715019 171717022 +
3 domain predictions
 –
Lj1g3v2657200.1
n.a. Auxin-responsive GH3 family protein [Theobroma cacao] gi|508707326|gb|EOX99222.1| chr1 30946926 30947486 -
2 domain predictions
 –
Lj1g3v4407580.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] gi|356504890|ref|XP_003521227.1| chr1 51405040 51407987 -
3 domain predictions
 –
Lj1g3v5033400.1
n.a. n.a. chr1 61358942 61370806 -
3 domain predictions
 –
Lj1g3v5033420.1
n.a. n.a. chr1 61360218 61372266 -
3 domain predictions
 –
Lj2g3v1199970.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1-like [Glycine max] gi|356499966|ref|XP_003518806.1| chr2 19179101 19180407 -
3 domain predictions
 –
Lj2g3v1925790.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3 [Medicago truncatula] gi|357482733|ref|XP_003611653.1| chr2 28389519 28392408 +
3 domain predictions
 –
Lj2g3v1925800.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3 [Medicago truncatula] gi|357482733|ref|XP_003611653.1| chr2 28389519 28392709 +
3 domain predictions
 –
Lj2g3v2027870.1
n.a. GH3 family protein [Populus trichocarpa] gi|224068322|ref|XP_002302704.1| chr2 31020763 31023923 +
3 domain predictions
 –
Lj2g3v2028890.1
n.a. GH3 family protein [Populus trichocarpa] gi|224068322|ref|XP_002302704.1| chr2 31025205 31025876 +
3 domain predictions
 –
Lj2g3v2028900.1
n.a. Indole-3-acetic acid-amido synthetase GH3.5 [Medicago truncatula] gi|357457261|ref|XP_003598911.1| chr2 31025992 31026612 +
3 domain predictions
 –
Lj3g3v2415310.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] gi|356520302|ref|XP_003528802.1| chr3 29903990 29907039 +
3 domain predictions
 –
Lj3g3v2416320.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] gi|356520302|ref|XP_003528802.1| chr3 29908184 29909339 +
3 domain predictions
 –
Lj3g3v2781590.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] gi|356542133|ref|XP_003539525.1| chr3 34225759 34230384 +
3 domain predictions
 –
Lj3g3v2781590.2
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] gi|356542133|ref|XP_003539525.1| chr3 34225759 34230384 +
3 domain predictions
 –
Lj4g3v0793380.1
n.a. PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1-like isoform 1 [Glycine max] gi|356541717|ref|XP_003539320.1| chr4 12415553 12418030 -
3 domain predictions
 –
Lj5g3v1653110.1
n.a. GH3 family protein [Populus trichocarpa] gi|224068322|ref|XP_002302704.1| chr5 23710206 23713973 +
3 domain predictions
 –
Lj6g3v2258840.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3 [Medicago truncatula] gi|357482733|ref|XP_003611653.1| chr6 26212699 26214814 +
3 domain predictions
 –
LotjaGi1g1v0731400.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q60EY1|GH36_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.6; TrEMBL-Plants: tr|A0A151TUA6|A0A151TUA6_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.6; Found in the gene: LotjaGi1g1v0731400 LjG1.1_chr1 130296568 130299741 +
3 domain predictions
 –
LotjaGi1g1v0790400.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151TXX1|A0A151TXX1_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi1g1v0790400 LjG1.1_chr1 136217866 136222402 +
3 domain predictions
 –
LotjaGi1g1v0790400.2
n.a. Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151TXX1|A0A151TXX1_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi1g1v0790400 LjG1.1_chr1 136219027 136222115 +
3 domain predictions
 –
LotjaGi1g1v0790400.3
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A1J7IS32|A0A1J7IS32_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0790400 LjG1.1_chr1 136219209 136219751 +
3 domain predictions
 –
LotjaGi1g1v0790400.4
n.a. Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151TXX1|A0A151TXX1_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi1g1v0790400 LjG1.1_chr1 136219209 136222115 +
3 domain predictions
 –
LotjaGi2g1v0287900.1
n.a. GH3.3; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|A0A151S0P1|A0A151S0P1_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.1; Found in the gene: LotjaGi2g1v0287900 LjG1.1_chr2 76096150 76102245 -
3 domain predictions
 –
LotjaGi2g1v0287900.2
n.a. GH3.3; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|A0A173H224|A0A173H224_VICFA Auxin-responsive GH3 family protein; Found in the gene: LotjaGi2g1v0287900 LjG1.1_chr2 76099558 76101647 -
3 domain predictions
 –
LotjaGi2g1v0405900.1
n.a. GH3.3; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|G7K574|G7K574_MEDTR Indole-3-acetic acid-amido synthetase; Found in the gene: LotjaGi2g1v0405900 LjG1.1_chr2 90299525 90302319 +
3 domain predictions
 –
LotjaGi2g1v0405900.2
n.a. GH3.3; TAIR: AT2G23170.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O22190|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3; TrEMBL-Plants: tr|A0A142L096|A0A142L096_PEA Indole-3-acetyl-amido synthetase; Found in the gene: LotjaGi2g1v0405900 LjG1.1_chr2 90300216 90301815 +
3 domain predictions
 –
LotjaGi2g1v0435300.1
n.a. GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|A0A0R4J433|A0A0R4J433_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0435300 LjG1.1_chr2 93182942 93186480 +
3 domain predictions
 –
LotjaGi2g1v0435300.2
n.a. GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|V7BDE0|V7BDE0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0435300 LjG1.1_chr2 93183444 93186480 +
3 domain predictions
 –
LotjaGi3g1v0096900.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT5G54510.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6; TrEMBL-Plants: tr|A0A072TQB1|A0A072TQB1_MEDTR Indole-3-acetic acid-amido synthetase; Found in the gene: LotjaGi3g1v0096900 LjG1.1_chr3 12080309 12084169 +
3 domain predictions
 –
LotjaGi3g1v0318700.1
n.a. GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|A0A151RA50|A0A151RA50_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.9; Found in the gene: LotjaGi3g1v0318700 LjG1.1_chr3 67552867 67556266 +
3 domain predictions
 –
LotjaGi3g1v0392800.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT2G46370.4 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9SKE2|JAR1_ARATH Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151SMT0|A0A151SMT0_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi3g1v0392800 LjG1.1_chr3 79189111 79194427 +
3 domain predictions
 –
LotjaGi3g1v0392800.2
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT2G46370.4 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9SKE2|JAR1_ARATH Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151SMT0|A0A151SMT0_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi3g1v0392800 LjG1.1_chr3 79189186 79194282 +
3 domain predictions
 –
LotjaGi3g1v0392800.3
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9SKE2|JAR1_ARATH Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A151SMT0|A0A151SMT0_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi3g1v0392800 LjG1.1_chr3 79190778 79193999 +
3 domain predictions
 –
LotjaGi3g1v0437700.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT5G54510.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6; TrEMBL-Plants: tr|A0A0B2QW15|A0A0B2QW15_GLYSO Indole-3-acetic acid-amido synthetase GH3.6; Found in the gene: LotjaGi3g1v0437700 LjG1.1_chr3 85041916 85045358 -
3 domain predictions
 –
LotjaGi3g1v0442000.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT4G03400.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9SKE2|JAR1_ARATH Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|I1LUE4|I1LUE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0442000 LjG1.1_chr3 85466682 85471654 +
3 domain predictions
 –
LotjaGi3g1v0442000.2
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT4G03400.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A0B2P4Z8|A0A0B2P4Z8_GLYSO Putative indole-3-acetic acid-amido synthetase GH3.5; Found in the gene: LotjaGi3g1v0442000 LjG1.1_chr3 85466926 85471254 +
3 domain predictions
 –
LotjaGi3g1v0442000.3
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT4G03400.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|I1LUE4|I1LUE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0442000 LjG1.1_chr3 85468169 85471394 +
3 domain predictions
 –
LotjaGi3g1v0455100.1
n.a. GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|V7BDE0|V7BDE0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0455100 LjG1.1_chr3 86843088 86848257 -
3 domain predictions
 –
LotjaGi3g1v0455100.2
n.a. GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|V7BDE0|V7BDE0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0455100 LjG1.1_chr3 86843088 86848257 -
3 domain predictions
 –
LotjaGi3g1v0458300.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT4G03400.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|I1LRZ0|I1LRZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0458300 LjG1.1_chr3 87259778 87265088 -
3 domain predictions
 –
LotjaGi4g1v0098800.1
n.a. Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|V7CCK2|V7CCK2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0098800 LjG1.1_chr4 13366847 13369548 -
3 domain predictions
 –
LotjaGi5g1v0252000.1
n.a. GH3 family protein; TAIR: AT2G47750.1 putative indole-3-acetic acid-amido synthetase GH3.9; Swiss-Prot: sp|O82243|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9; TrEMBL-Plants: tr|A0A151RA50|A0A151RA50_CAJCA Putative indole-3-acetic acid-amido synthetase GH3.9; Found in the gene: LotjaGi5g1v0252000 LjG1.1_chr5 56037976 56042044 +
3 domain predictions
 –