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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0798400 |
Transcript ID | LotjaGi1g1v0798400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding protein; TAIR: AT3G54770.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0L9VQ30|A0A0L9VQ30_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136908345..136910324) extracted from Lotus japonicus Gifu genome v1.2.
ATATTAATTGGTAATTAGTGCGTGTTAATGAAGGAGGGCCAAAACAAGGGGCGTTTTACAGCTATCACTCACATTCCTGT AATTGTGACATTAAATTAATAAAAATGAAGAGGTAGCGAAAGATGAGGGGGTGATCGATCACGTTGATGACGGCTAATCC TCAGTCACAGTCTATCTGTCTTCTTACCTGTCTGTCTGTCCTTCTTGTCCTGCTGTTTTCATATTTACATAATTATTTGG TCTCACCATTTGCCTTTATAAAATTCCCCCTTCGAACCAAGCTCAATCTGCACCAGCTAGCCTTAGCTACGTACTTAAGT TATTTATTATATATAATTAGTGGATCGGATCTATCCGGCCAATCGATCCATACTCGATCAGTCAGAACCAAGAATTGAAG GAAGAAGATCGATGACGATGCTGAGCACCAACAACAATAACAACAAGGTTGGTCAGTTTGGGGACACCACATTGACCAAA GTGTTCGTGGGAGGGCTGGCCTGGGAGACTCCGAAAGAGATACTGAGAGAGCAGTTTGACAAGTTCGGTGAGATCCTTGA AGCCGTCATCATTTCTGATAAGCTCACTGGCAGATCCAAAGGCTATGGTTTTGTAAGTCCATATATCTTATTCTTATTCC AAAAATAAGGTAATTACTAATTAATGTATATATATATATGGCATTTCACTATATATAAAAGGTGACATTCAAGGAAGCAG AGGCGGCCAAGAAGGCTTGCGAGGAACCAACTCTGATTATCAATGGTCGCAGAGCCAACTGCAATCTCGCATCGCTCGGT GCACGCCGTCCAAGGTCATCACCCATCCCTTCCCCCTCCCAAACTCCTCCACCTCCACAGGCACAACTAGCAACCAGGCA GGTTCAGTGGTATTATCCCCCTGCAGTTGCACCGGCTGCTTCCCCATACCATCATCAGCCACTTCCTTTCTACGGGTATG TTATTGTTATGTATCACTTTCACATTCTTTTTCTTTTTAAAATAATCAAATATCTTCAAAATGCATGTATATGCTTTCAA AAATATAATAGTATAATGTTGAGGAGTTGAGTGAGATGAATGGGGAAGGGTCTAGGGTTCGAACTCTAAGGATTACTAAT TTATTAACACTACTAATAGCTAACATTTACCTATAACAAAAAAAATTGTACTAGTATAATGTAGTAATTAAAATACATAA ATCTTTTTATTTTTATATTCAGGTACCCGCACACTTACATTGCAGCGCCAGGGGACATGAATTACAATTACAATTACAAT CAGGTAGGATTGAATATGTTATTGTTACTTTAAAAAAAATGTTATAGTTGCAAATGAGAAAATTAATTAAATGTAAAAGA CAATATTTAATTAATTATTAAATGATTTTTTGTATAGCAGAAGTTGAGCTACGGAAATGGTGGGGGCTACTATGGGCATC AAGTGTACCCGGTGCCAATGTACTACCAGCACCACCACCACCCAGCTGTGTACCACCACCGAGCCACCGAGACAATGGGT CTACCTGCACACATGTTCCATTTCGCCACCATGGCTCCTGCTACAGCTCAAGTTGGCACGGGTACTGAATGCTTCAAAAG GGTGGTCTAAGTCTGAGTCTGAGTCTGAGAGAAGCTTAATTAATAATATGAGCAGGACCTGGTGGAGTAGAACGTGGTGC TGATTGACTGCACGCAGCTACATTATTATTATTTGATCTGTCGTGCCATGCCATTGCCAGCAATTCTTTTTTACTTTTTG TAATTTTGTTTCATTTTTAATTAATTCTTTATCTTAGCTAGGTACCTGTTTCGTTTCATTCATCAGATTCTTTCATTCTC TCTCTCTCTCTAACATCCCAGCATATATGAGCTGTGAACTCTTCAGTACAACAAAAGAACAACAATATGTCCATGTGTAT CAATCATGAACCACCACCCATGCCTTATGGCCTTGGTTGTTTTTCCCTCACATCAAATTA
CDS sequence (LotjaGi1g1v0798400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGCTGAGCACCAACAACAATAACAACAAGGTTGGTCAGTTTGGGGACACCACATTGACCAAAGTGTTCGTGGG AGGGCTGGCCTGGGAGACTCCGAAAGAGATACTGAGAGAGCAGTTTGACAAGTTCGGTGAGATCCTTGAAGCCGTCATCA TTTCTGATAAGCTCACTGGCAGATCCAAAGGCTATGGTTTTGTGACATTCAAGGAAGCAGAGGCGGCCAAGAAGGCTTGC GAGGAACCAACTCTGATTATCAATGGTCGCAGAGCCAACTGCAATCTCGCATCGCTCGGTGCACGCCGTCCAAGGTCATC ACCCATCCCTTCCCCCTCCCAAACTCCTCCACCTCCACAGGCACAACTAGCAACCAGGCAGGTTCAGTGGTATTATCCCC CTGCAGTTGCACCGGCTGCTTCCCCATACCATCATCAGCCACTTCCTTTCTACGGGTACCCGCACACTTACATTGCAGCG CCAGGGGACATGAATTACAATTACAATTACAATCAGCAGAAGTTGAGCTACGGAAATGGTGGGGGCTACTATGGGCATCA AGTGTACCCGGTGCCAATGTACTACCAGCACCACCACCACCCAGCTGTGTACCACCACCGAGCCACCGAGACAATGGGTC TACCTGCACACATGTTCCATTTCGCCACCATGGCTCCTGCTACAGCTCAAGTTGGCACGGGTACTGAATGCTTCAAAAGG GTGGTCTAA
Protein sequence (LotjaGi1g1v0798400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMLSTNNNNNKVGQFGDTTLTKVFVGGLAWETPKEILREQFDKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKAC EEPTLIINGRRANCNLASLGARRPRSSPIPSPSQTPPPPQAQLATRQVQWYYPPAVAPAASPYHHQPLPFYGYPHTYIAA PGDMNYNYNYNQQKLSYGNGGGYYGHQVYPVPMYYQHHHHPAVYHHRATETMGLPAHMFHFATMAPATAQVGTGTECFKR VV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 4 | 108 | 105 | 2.5E-23 | ||
PANTHER | 14 | 202 | 189 | 1.0E-64 | – | |
PANTHER | 14 | 202 | 189 | 1.0E-64 | – | |
SUPERFAMILY | 21 | 109 | 89 | 2.55E-24 | ||
CDD | 22 | 97 | 76 | 5.06445E-39 | – | |
ProSiteProfiles | 22 | 99 | 78 | 16.432 | ||
SMART | 23 | 95 | 73 | 9.3E-23 | ||
Pfam | 24 | 90 | 67 | 5.0E-16 | ||
MobiDBLite | 100 | 122 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0798400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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