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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0160200 |
| Transcript ID | LotjaGi2g1v0160200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxidase; TAIR: AT1G05260.1 Peroxidase superfamily protein; Swiss-Prot: sp|O23044|PER3_ARATH Peroxidase 3; TrEMBL-Plants: tr|I3SMM5|I3SMM5_LOTJA Peroxidase; Found in the gene: LotjaGi2g1v0160200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56259213..56261450) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATTTTTCAAGATTCCACACCTCCTTTACTTTAAACCATGAAAACCTAAACTATTCAACTTCATCATCAATCTCTGT TAGCGGTGGTACACTCAACCAAACCATAAAAAAGAAAAGCTTAAAATTTATAATAGAGTATACAATGCTTAGCTGGTTTT GCCTTGAAAAAATTACACTTCTGCCTATAAAAGGGAGTAACTGTATTGTTGTCAACCATCCCATTCTCTAGTTAACACTC TGCAGAGAAGAAGCAACACAAATATTCAAACATGAAGATAAATTCTCCCCTTCTAGCTTGTTTGGCAGTGTTTTGTTTCC TTGGGGTTTGTCAAGGAGGCAGCCTCAGGAAACAATTCTACAGGAAATCATGTTCTCAAGCAGAGCAGATTGTTAAGACC ACAATCCAGCAACATGTCTCTTCAAGGCCTGAACTGCCAGCAAAGTTGCTTAGAATGCATTTCCATGATTGTTTTGTCAG GGTAATTGAACATTCCAAGATCCTTAAGAATATTTCTATATATATCTTCTCATATTATGATACTACTCAGCTGCATCATT TGGAATTTAGATTGATCAATCCTAATTACACTGCAACTTGTTTTGTTGCTACATATATTATAAGGGAAATGGTTGTTGCT AATGCTAATAACATTTCAGGGTTGTGATGGCTCGGTTCTGCTGAACTCCACTGCCGGTAACACTGCAGAGAAGGATGCCA TTCCTAATTTGTCTTTGTCTGGTTTTGATGTCATAGATGAGATAAAAGAAGCATTGGAGGCAAAGTGTCCCAAAATTGTA TCTTGTGCTGACATACTGGCATTGGCAGCCAGAGATGCTGTTTCTGTTCAAGTAAGCTTGTATATGCCAGAACATTGCAC TGCAAATTTAGTTCATATAATGCAGAATTTGAATACCTTTGCCTTAGTTTATGCATGTAGCTGATCTTTCTATCGTTTCA GTTTAATAATGAGCCCAAGTGGGAAGTTCTAACCGGCAGAAGAGATGGCACAGTATCCAAAAGTAGTGAAGTCCTGACCA ATATCCCAGCACCTTTCTTCACCTTCACACAGCTCAAACAAAGCTTTGAAAGCAAAAAGCTTACTCTGCACGACATGGTT GTACTATCAGGTACATTTATATTTTGTTATAAACTCGTGCTACACATTTATTGTCACAAATCAAACCAAGTATCCCAAAA AGTTTAAGCAGTTTGGTGAAAACACAGAGTGATTTTATATTATATTTCTAACCTATCACGCAAGAGTCCATTGTACTTGA ACCGTGGTTAATGCACATGTCTACCTACCTAAGGTTAAATTCATTTTTTTAAGAAGTATCGAGGCAACAAGATCAAAATC TATATCACTTCGTCACAGAGAAATTGTTAAGTAAAACACGTGAATGATTTTATATTATATTTCAACTGTTCATGATATTA CTTATAAATACTAATTGCAAGCAGGAAATTACTCAGATTATCACGCTCAGCACTCAGCAGTTTAAACAAATTAATTAAAT TAACCTATTGGCTATATATATATAGGAGGACACACAATTGGAGTAGGTCATTGCAACTTGTTCAGCAACAGGCTTTACAA CTTCACTGGAAAAGGAGATCAAGATCCTTCTTTGAATCCCACTTATGCTGAGTTCTTAAAGACCAAGTGCAAAAGCCTCA GTGACACCACCACAACAGTAGACATGGATCCTAATAGTGGTACCACATTTGACAGTAACTACTACTCCATCCTTCTCCAG AACAAGGGTATGTTCCAATCAGACGCTGCACTTCTAGCAACCAAGCAGTCGAAAAAAATTGTTAATGAATTGGTTGGGCA AAACAAATTCTTCACAGAGTTTGGTCAGTCAATGAAGAGGATGGGAGCCATTGAGGTCCTCTCAGGCACGGCTGGGGAAA TTAGGACAAAGTGCTCTGTTGTCAACTCTTAATTTAAACAGCTGTTCTGTTTTCCAGTTTTAAATTCCTTAATTTGTTTC TTAATTTTCTGTTTTTGTCGCGAATAAATGTGGGTTATGACTTGTGAAACCGTTGTTATGTTGAAAATTTGATTTATGAT TCATATACCTTCAACCTTGAGTTCAAAATAAGATTTCTGTCCGTGTCAAATGTGTCACTTTTTCCTAGCCCATTATATAT TTAATATAGGTTTAATTTCATTTTTGGTCCCTTAACTATCGCGATAATGCAAATGGGGTCCCACTTCTTTAAAACGAG
CDS sequence (LotjaGi2g1v0160200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATAAATTCTCCCCTTCTAGCTTGTTTGGCAGTGTTTTGTTTCCTTGGGGTTTGTCAAGGAGGCAGCCTCAGGAA ACAATTCTACAGGAAATCATGTTCTCAAGCAGAGCAGATTGTTAAGACCACAATCCAGCAACATGTCTCTTCAAGGCCTG AACTGCCAGCAAAGTTGCTTAGAATGCATTTCCATGATTGTTTTGTCAGGGGTTGTGATGGCTCGGTTCTGCTGAACTCC ACTGCCGGTAACACTGCAGAGAAGGATGCCATTCCTAATTTGTCTTTGTCTGGTTTTGATGTCATAGATGAGATAAAAGA AGCATTGGAGGCAAAGTGTCCCAAAATTGTATCTTGTGCTGACATACTGGCATTGGCAGCCAGAGATGCTGTTTCTGTTC AATTTAATAATGAGCCCAAGTGGGAAGTTCTAACCGGCAGAAGAGATGGCACAGTATCCAAAAGTAGTGAAGTCCTGACC AATATCCCAGCACCTTTCTTCACCTTCACACAGCTCAAACAAAGCTTTGAAAGCAAAAAGCTTACTCTGCACGACATGGT TGTACTATCAGGAGGACACACAATTGGAGTAGGTCATTGCAACTTGTTCAGCAACAGGCTTTACAACTTCACTGGAAAAG GAGATCAAGATCCTTCTTTGAATCCCACTTATGCTGAGTTCTTAAAGACCAAGTGCAAAAGCCTCAGTGACACCACCACA ACAGTAGACATGGATCCTAATAGTGGTACCACATTTGACAGTAACTACTACTCCATCCTTCTCCAGAACAAGGGTATGTT CCAATCAGACGCTGCACTTCTAGCAACCAAGCAGTCGAAAAAAATTGTTAATGAATTGGTTGGGCAAAACAAATTCTTCA CAGAGTTTGGTCAGTCAATGAAGAGGATGGGAGCCATTGAGGTCCTCTCAGGCACGGCTGGGGAAATTAGGACAAAGTGC TCTGTTGTCAACTCTTAA
Protein sequence (LotjaGi2g1v0160200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKINSPLLACLAVFCFLGVCQGGSLRKQFYRKSCSQAEQIVKTTIQQHVSSRPELPAKLLRMHFHDCFVRGCDGSVLLNS TAGNTAEKDAIPNLSLSGFDVIDEIKEALEAKCPKIVSCADILALAARDAVSVQFNNEPKWEVLTGRRDGTVSKSSEVLT NIPAPFFTFTQLKQSFESKKLTLHDMVVLSGGHTIGVGHCNLFSNRLYNFTGKGDQDPSLNPTYAEFLKTKCKSLSDTTT TVDMDPNSGTTFDSNYYSILLQNKGMFQSDAALLATKQSKKIVNELVGQNKFFTEFGQSMKRMGAIEVLSGTAGEIRTKC SVVNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 7 | 324 | 318 | 1.2E-155 | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| PANTHER | 7 | 324 | 318 | 1.2E-155 | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 325 | 303 | - | – | |
| ProSiteProfiles | 24 | 324 | 301 | 75.387 | ||
| SUPERFAMILY | 25 | 324 | 300 | 1.92E-101 | ||
| CDD | 25 | 323 | 299 | 8.81314E-179 | ||
| Gene3D | 28 | 324 | 297 | 2.6E-121 | – | |
| PRINTS | 34 | 53 | 20 | 6.6E-48 | ||
| Pfam | 41 | 286 | 246 | 2.2E-76 | ||
| PRINTS | 56 | 70 | 15 | 9.7E-28 | ||
| PRINTS | 58 | 78 | 21 | 6.6E-48 | ||
| PRINTS | 97 | 110 | 14 | 6.6E-48 | ||
| PRINTS | 116 | 126 | 11 | 6.6E-48 | ||
| PRINTS | 117 | 134 | 18 | 9.7E-28 | ||
| PRINTS | 137 | 149 | 13 | 9.7E-28 | ||
| Gene3D | 163 | 303 | 141 | 2.6E-121 | – | |
| PRINTS | 184 | 196 | 13 | 6.6E-48 | ||
| ProSitePatterns | 185 | 195 | 11 | - | ||
| PRINTS | 185 | 200 | 16 | 9.7E-28 | ||
| PRINTS | 243 | 258 | 16 | 6.6E-48 | ||
| PRINTS | 245 | 260 | 16 | 9.7E-28 | ||
| PRINTS | 259 | 276 | 18 | 6.6E-48 | ||
| PRINTS | 298 | 311 | 14 | 6.6E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. | ||
| Biological process | Response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. | ||
| Biological process | Hydrogen peroxide catabolic process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0160200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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