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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0161900 |
| Transcript ID | LotjaGi2g1v0161900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hypersensitive-induced response protein; TAIR: AT5G51570.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4; TrEMBL-Plants: tr|I1L3L1|I1L3L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0161900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56740254..56744062) extracted from Lotus japonicus Gifu genome v1.2.
ACTCTCTTGTTTTTTCAATGGTGGGTTCTTTTGGGGAGGCTCAGATTTTTATTGTCTCAGGATATCTAGCTTTTGGAAAC CTCTTTTTATTTTGTCGACACTTGTGAATACTTCTTGACTTCAGTATTATTATGTGTTAAGCCTTGTGAGTGCTTGGCCC GTTTAATATCAACCCTAAAATAGATTTTGGAAAAGTCTTGATATTATTTATTTAGTCTCACTTATTTTTCATTGGTGGTT TCAATTTTCCAAATTAGGGTTTACAACTATAAAACCATAGAAAGAAGAAAAATAGAAAAAACAATCACATTATTCTGCGG TATTGGCTTGTTTTAGAGTAAGAAGTAGAATAGAATGGGGAACACGTTTTGCTTCTTCTGTGGTTGCATTGGTCAAGCCA GCGTCGGTGTGGTGGAGCACTGGGGTCGCTTCCACCGTGTAGCGCAACCCGGCTTCCACTTCTTCAACCCCCTCGCCGGC GAATGCCTCGCCGGCGTCCTCTCCACCCGCATCGCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGGTGAATTCTCA ATTCCCAATTCTGAAAAATTGATTGTGATTTCGATGATATTGATCGGTTTTTTTTATGGCGGCGGTGCAGGATAACGTGT TTGTGCAGTTGCTATGTTCGATTCAATACAGGGTTGTTAAGGAGAACGCTGATGATGCTTTCTATGAGTTGCAGAATCCG CAGGAACAGATCCAGGCTTATGTTTTTGATGGTTGTGTTTGTTTGGTTCGATTTTCTACGCGGTTATTGGTTTGACTTTG TGAATTTTTCTAATTGGGTGTTGTTGTTTGCAGTGACTCGTGCTATTGTTCCAAGGATGAATTTGGATGACTTGTTTGAG CAGAAGGGTGAGGTTGCCAAAGCTGTGTTGGAGGAACTTCATAAGGTGATTAATTCACTGCTTGCTTTTGTTGAATTATC ATCATCAATTCTGGCAATCTTTAATGGAATATATATGCAGTAATTAATTCCAAACTGAAAAGAAGAATCTTAGTTATATA TTAAATATTAGGGAAAATATATAGTTTACCGACGTGTGGTTGTTTCAAGTGGTATATGTTTGATCCCTCTAAAGCTTCGA GTCTTGTATATGAAAAATACCTCGCTTTGAGAGCTTGTGAGCAATTCCAAATTGTTAAGAAGAATCTTAGTATAATACAT GAATTATGAGGGAAAATATTTATTAAAAAGTTTATAGTTTAATGCATTGTTAATGTTAACTTCAAAATCTTCACTTTGCA GTGAATACTATTCAATTTTTTGATTTCTTAACCGGTGCCGTTAGGACAATCGTTAGCATTTACCTGATTATTTTGGTTCC ATTTATGATTATAAGTTATAACTGGCCGGTTGCATAGAAGGGTTTAATGGTTTATGATAAAGCATATGCTTTGGCATATG ATGCTAAGTAAGATTTCATTGTACTAGTTCCTTTTCTTTCAAGGAAGAAAGGATCGAAATAGTAACCATGTCCAACAGTG GAAATAAAGATGAAAATACCATAATTAATTGGTAAATGATAGACGTTTTTTTTTTATTCTGTCTACGATGACTCATGATA ATTTTTAAAATATCGATTTTCTTTTTATTAGAAATTTTGTGTATTCATATTAGGTTTGTGTGTTGTATTATAGTTGAGTT TTGTGGTATACTTTTTATATTTGTTGTATCCGTGCTTTATAGGTTTATGCTGAATTTCTTGCTTGATTTTGTATGTAAAT ACAATTATTATATTGATCTCCTTATATTTTGCATTAGGTGATGGGAGAATATGGATATAGCATTGAGCACATACTGATGG TTGATATTATACCTGATCCTTCTGTGCGTAAGGCAATGAATGAAATTAATGCAGGTATGGGACTTTATGGTTATTACTTA TTAGGATGCGTTTGTGTTCCTCCTATGTTCATATCAAGCAGTTCTCTGTGTACTTATTAGGATGTGTATATGTATGTATA CCTGATCCCCCCTGTGGCCCTGTGTTTGTATTTTTGCTTCTGTGTACTTATTAGGATGTGTATATGTATGTATACATTGG ATTGGGTCTGAAAAGATAGTTCTCTGTTTTGCTGCTTTACGAATTTTTAGATATCTTGTCAATTGGTGATATCTCAATTG TAGTTTTGGGTCCTGTGAGCATCTTGATGAAATTGTTCTTAAATCACCCCCTCCCCATTTTCCTTTCTCTGTCCCAAACT CTGATTTTATTTCAAAGAAGCAGATCGTGCTTGAGCTGTGTGTCTGTGACTGTGTGTTTATCCCTACATGTCCCTGTATG CTACCTGTGTGTATTGCAATCTAGATGTCCCTTTATGGTGACTAATAGTAATCACTGAGGATTATTTTATTACAGCTCAA AGGATGCTACTTGCTAGTGAATTCAAAGGAGATGCTGAAAAGGTGCTTCTAGTGAAGAAGGCAGAAGCTGAAGCTGAAGC CAAGTATTTGGGCGGGGTTGGTGTGGCCAGGCAGCGACAAGCTATCACAGATGGCCTGAGAGAGAACATCTTGAATTTTT CTGGCAAGGTAGAAGGCACTTCTGCTAAGGAAGTGATGGATCTTATCATGGTTACTCAGTACTTTGACACAATCAAAGAC CTTGGGAACTCATCAAAGAATACCACAATTTTCATCCCCCATGGACCTGGCCACGTTAGGGATATTGGTGACCAGATACG CAATGGAGTGATGGAAGCAGCCAGTGCTCAAGTTATCGAGTGATTTTGTAACGCTGTCTCTATCTATGTTGCCCATCTGA CTCTCTTTCTCATGCACACACACTCAAACACACATTTATAGTAGTATACGGATAAGTATTATGTTTCTGCTTAATTTTGA AGAAGAGAAGTTTTTGAGCAGTTGGGAGTTGTAATTAAAGATTGAGTCTTGCTATACAATCTTTGTAGTCATTCTACACG TTCATTGTCATTTAGATGATGAGACAATGCAAAAGGTGATCTGCAATCTGCTTTATAGGAAGTTGTTTTTCTGAAGGAAA AAACATATTGTTTTAATTTTCCTCTTTTACGAAGTATGTGTGTATGCATATGGTCAAAACCCAAGTAGTATGTGGCGCTT GACAATCTTTAGCTTAGAGCATCTCCCATGCAAGGTTGTTAGTTGAGTTGCTTAAACACTATTTTGGTGGGCCCAAACTG CCACATAAGATTTAAGCAATTCATAAGCAATCCATGTTGATTTTGCTCCAATGCAAGGTTGCTTATTTTACTTTTAGTAG GGTCCCACTATACTTTATATTTATATTTTTTATTCCCACATTTAAATTTAAATATTAATTCAAATGTAACTGATTACTTT TTCAACCACATCGGAGGTTCAATCACGAGATTGTAGGTTTACAAAATAGATCGGAGACATGCAATAAGTCATTGTTGTCG GAGTCGTTGCTGCGCCGGTGGTGCTCACCTCATATCCCTCTCCGGTTCTCTCTTCTCTTATGTAACAAATTTTTGTTTTG TTTTGTTTTTTTCTTTTGTTTGGGACTTTCAACAATTTGTATTTTAAATTTATTAAATTTGTGCTCATCTCCCTTCTCTT CTATAATAAATTTCTGAATATTATTTTATTTTTTTCTACTGCTTGTGACCTTTATGGATTATCTTTGTTTGTTGCTTCTG CTTGTTCTTCCCTCTTCTTTTAACGAGAATTCTATTGCTGGTTGAGAAAGAGAAAACAGTTTTTTAATAGCTGCAGCAAG TTAAGGAGCGTTGCTTAGCTTTGAGCTGTTAGCAACGCCACCTCAGCAA
CDS sequence (LotjaGi2g1v0161900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAACACGTTTTGCTTCTTCTGTGGTTGCATTGGTCAAGCCAGCGTCGGTGTGGTGGAGCACTGGGGTCGCTTCCA CCGTGTAGCGCAACCCGGCTTCCACTTCTTCAACCCCCTCGCCGGCGAATGCCTCGCCGGCGTCCTCTCCACCCGCATCG CCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGGATAACGTGTTTGTGCAGTTGCTATGTTCGATTCAATACAGGGTT GTTAAGGAGAACGCTGATGATGCTTTCTATGAGTTGCAGAATCCGCAGGAACAGATCCAGGCTTATGTTTTTGATGTGAC TCGTGCTATTGTTCCAAGGATGAATTTGGATGACTTGTTTGAGCAGAAGGGTGAGGTTGCCAAAGCTGTGTTGGAGGAAC TTCATAAGGTGATGGGAGAATATGGATATAGCATTGAGCACATACTGATGGTTGATATTATACCTGATCCTTCTGTGCGT AAGGCAATGAATGAAATTAATGCAGCTCAAAGGATGCTACTTGCTAGTGAATTCAAAGGAGATGCTGAAAAGGTGCTTCT AGTGAAGAAGGCAGAAGCTGAAGCTGAAGCCAAGTATTTGGGCGGGGTTGGTGTGGCCAGGCAGCGACAAGCTATCACAG ATGGCCTGAGAGAGAACATCTTGAATTTTTCTGGCAAGGTAGAAGGCACTTCTGCTAAGGAAGTGATGGATCTTATCATG GTTACTCAGTACTTTGACACAATCAAAGACCTTGGGAACTCATCAAAGAATACCACAATTTTCATCCCCCATGGACCTGG CCACGTTAGGGATATTGGTGACCAGATACGCAATGGAGTGATGGAAGCAGCCAGTGCTCAAGTTATCGAGTGA
Protein sequence (LotjaGi2g1v0161900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTFCFFCGCIGQASVGVVEHWGRFHRVAQPGFHFFNPLAGECLAGVLSTRIASLDVRIETKTKDNVFVQLLCSIQYRV VKENADDAFYELQNPQEQIQAYVFDVTRAIVPRMNLDDLFEQKGEVAKAVLEELHKVMGEYGYSIEHILMVDIIPDPSVR KAMNEINAAQRMLLASEFKGDAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSGKVEGTSAKEVMDLIM VTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIGDQIRNGVMEAASAQVIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 287 | 287 | 1.1E-157 | – | |
| PANTHER | 1 | 287 | 287 | 1.1E-157 | – | |
| SMART | 7 | 167 | 161 | 8.9E-20 | ||
| CDD | 11 | 280 | 270 | 1.72211E-151 | – | |
| Pfam | 13 | 187 | 175 | 6.0E-25 | ||
| Gene3D | 48 | 169 | 122 | 8.4E-14 | – | |
| SUPERFAMILY | 48 | 171 | 124 | 2.75E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0161900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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