Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0188000 |
Transcript ID | LotjaGi2g1v0188000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | GAGA-binding transcriptional activator; TAIR: AT2G01930.1 basic pentacysteine1; Swiss-Prot: sp|Q9SKD0|BPC1_ARATH Protein BASIC PENTACYSTEINE1; TrEMBL-Plants: tr|H1ZN99|H1ZN99_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi2g1v0188000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61756612..61759925) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATCATAAATTCAAATATTTTAAAAGATTAGATTATAAGATGGCGTGCAGACATTTTTGTTCCCATTGCTCTCTT CATTCTCCATTCGTAGACGCCAAGAACCCTAACAACAGGTACTGCACCCTTCTCCCTCTGCTCAAACATTCAACGACCCT CTTTTTATTTCTTCAATTCCTCACATCAATTTTTGTTTTTTCCTTTTATTGCATTTTACCACTTTCATGTTTATTATTTA TTCTGTTGATCTGTTCATTCTGCCTCAAAGATCTGAATTTTTTGTGCTGTTTTATTCCCCCAATGGATCTTAGATCAAAA CCCAGAAGCTGAAACCTTTGTTTCTCAAGGTTTTGCATGCGTACATTTTTGGGATTTGTGTAATTTATCCTGTTGAAACC CTTTTTCTGGTTTGACTATGTTTGAGCTAAAACATTAGGTGGGTTTTTGTTTTGTTTCGTTTCCCAATTGTACTATGTTG TTGCTGTTGTTTTTTAATTTTTTTAATTTTAATTTTATTGTGTTGGCTTGTTTAGGTGAATGCAATGCAGCTGGATAATT TGTGAGGATATTTAACAAAGTGTACATTGTTGTTCTGCGATTTTGTTCGTCACTTGGTATTGTGATGGATGGTGATAATG GTCTTAACATCCGAAATTGGGGTTACTATGAACCCGCAACGTCCTTTAAGAGCCATCTGGGGCTGCAGCTGATGTCCACC ATGCCCGAAAAACCTATGTTCGGCGGTCGCAATGCTGCGGTTTTATCCGGCGCTAATGGGGCATTTCACAATCACCACCA TAGGGACATTGGGATGCCCCAAGCTGCTACATACCCTATGGAGTACATGAGGGATGCATGGATTAGTAGTCAGAGAGACA AGTATATGCATATGATACCTACAAACCCGAGTTTTGGTGGTATTCCGGAGACATCTACAGCGCACCATATACAAATGATT CCACCACCTGAGTTGACAAAGGAAGAAAGCCCAATTGATGAGGCAGTAGCCCCTGTTGCTGAGAAGGTGAAGGGTACTGG TAAGAAGAGGCAGGGACCAAAGTTGCCCAAATCCCCCAAAGCAAAGAAGCCAAAGAGGGGCCCTCACCTTCCTAAGGATG AGAATGCTGCTTCAGTTCAACGGGCAAGGGTTCCAAAGAAGACTGCTGAAATTGTTATAAACGGGATTGATATGGATATT TCAAGCATTCCAATTCCTGTTTGTTCATGCACCGGGGCTCCTCAACAGTGTTACAGATGGGGTTCTGGTGGGTGGCAGTC AGCATGCTGCAGAACTGGCATGTCAATGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGCGCTAGGATAGCTGGGAGGA AAATGAGTATAGGAGCATTTAAGAAGGTTTTAGAGAAACTTGCCGCCGAGGGTTATAACTTTTCCAATCCAATTGATTTG AAGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACCATCAGGTAGTGAACTCTTTGGTCAACTGGCCTCTTATT CCCTTTAACCTGTTTGTCATGTATATATATGTGTATGTGGCCAGAGACTGAGGCTTCTTAGCTGGTTTGTAGTGCAAGGA TTTTCAAATTCATGAGACATTTCTTTTTTCTCTTCTATCGCTATCTATGCTGTTACTTTGGATTTAGTTATGGGAATTCA ATCTTTCGGTTGGTTGGTACTGATAGGGAAATATCAATTGAGATCTTGTTTTATAAATGATGCGCAGGAACTATTGATCT AGTCTCAAACCTTCTGGTCCAACGCAGTTATACTTCCTACTAAATATCTGTGTTCAGTTGTTGAGCATTACTGTGTAAAT TCATACTTAATATATGCGTAATGTTCGCGAAAGAGAGCTGGATTTGTCACCCCAACCATTAGATTTCACACCCCCAATTT TCGGATTTTCAAGTTCCGAATTATTTCGGAATCTTAGATTCCGAAATTAATTCGTGATTTGTAGTGTAAAATACATGTAA CACCCCACTTTTGACTGAAAAAGTGCTTCGGAAACCTTATTTCCGAAATATTTCGGAAACTGAGTTTCCGCAAGTGGGGT GGCATTTCTAATGAGTGGGGTGTCAAATCTAATGATCTTCGCGAAAGCTGGGTTTGGAAACACTAAACAAAGTGTTGAAT GGAAATGTTTTGCTAGATGGCTTGTCAATCAAACTTGATTTCAGTTAGGATATTATGGCATTGTTTGATCCATACAACCA GCTTCATCTAGCGGAAAAAGGCTTTTGCTTTTGTTGGTTTTTTGTGTTTTTAGATGATTGGGTTGCATGAACGCTACATC TTGTCTGAGAAGGGAAAGTCAGGTTTGTAGGGGTGAAATTAATATTTAGAATTTTAATGTTTTGGTCCTAAATCACACTT TTTTCCGACTGTTTTCTTTTCAGAAATGAATAAAAGTACTGAGCTTCCAAGCATCGTTAGTTTCTTCAAGTTTGCTGACA ATTGACATCTCTGACAAGTAAATTGAACTTCCTTGTTTTGTGGTGTATTTACTGATTGCAAATCTGAAGACATGTGCTGT AGTATATGTCGCTTGATTTGTACTAATAATTCCTCTAAATGCAAACTCTTTAATTGTTCAACCTCTAAAATTGGAAAAAA AAAAAAAAACTGAAGGCCTAGTTTTGTTGCTTTATTTTGGGGTCTCTACATATTGATATTTTTTGGTAAAATGGAGACCA TTTGTATTATGCAGAAGCACTCTTTTACATATGTCCCGTTTCGAATAGCTTATTTGAGCTAGTTTTATAATATGAATGTT TATGCATGTGTTTGGAAAAGTTTACGGTAACGCTTTATGGTCTGCCTATAAGATACTTTAAGTTTATTTTCATAATTTGT GTAAATTAACTTGTAGACAAACGCTAACACCTACTGAAAATTTATTTTAAGCTTATTTCAATAAACTTATTAAATTAGCT TATGAATTAATATTCATGCAATAAGCGTTTATTGCTATGAATGAATCCTTAATTAAATTGTTTACACCAAAGGCGCCCTT AGCTGCAAACATTGAAATAAGTCGTCAGGGTCTTTCTTTTCCTTTTTGTTTGAGTGCTATTTTAGTAGGTTGGAGAGGCA TCTTGTGCAACCATTAGGAAAATCTGGTGCCAAAACATTTGTGACTTTCTTTCCTTTCACTGGAATGGTGTCTGAGAGCG AATGAATAAGCTTAAATTGGTGAGTTGGTGATAAACAAGGGTTTCTGCTGTTAAAATTTTTAGAAAACTGATCAAATAAA CGGGGCGTTGAATGAGTATAAATTCTCCCATTTT
CDS sequence (LotjaGi2g1v0188000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTGATAATGGTCTTAACATCCGAAATTGGGGTTACTATGAACCCGCAACGTCCTTTAAGAGCCATCTGGGGCT GCAGCTGATGTCCACCATGCCCGAAAAACCTATGTTCGGCGGTCGCAATGCTGCGGTTTTATCCGGCGCTAATGGGGCAT TTCACAATCACCACCATAGGGACATTGGGATGCCCCAAGCTGCTACATACCCTATGGAGTACATGAGGGATGCATGGATT AGTAGTCAGAGAGACAAGTATATGCATATGATACCTACAAACCCGAGTTTTGGTGGTATTCCGGAGACATCTACAGCGCA CCATATACAAATGATTCCACCACCTGAGTTGACAAAGGAAGAAAGCCCAATTGATGAGGCAGTAGCCCCTGTTGCTGAGA AGGTGAAGGGTACTGGTAAGAAGAGGCAGGGACCAAAGTTGCCCAAATCCCCCAAAGCAAAGAAGCCAAAGAGGGGCCCT CACCTTCCTAAGGATGAGAATGCTGCTTCAGTTCAACGGGCAAGGGTTCCAAAGAAGACTGCTGAAATTGTTATAAACGG GATTGATATGGATATTTCAAGCATTCCAATTCCTGTTTGTTCATGCACCGGGGCTCCTCAACAGTGTTACAGATGGGGTT CTGGTGGGTGGCAGTCAGCATGCTGCAGAACTGGCATGTCAATGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGCGCT AGGATAGCTGGGAGGAAAATGAGTATAGGAGCATTTAAGAAGGTTTTAGAGAAACTTGCCGCCGAGGGTTATAACTTTTC CAATCCAATTGATTTGAAGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACCATCAGGTAG
Protein sequence (LotjaGi2g1v0188000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSTMPEKPMFGGRNAAVLSGANGAFHNHHHRDIGMPQAATYPMEYMRDAWI SSQRDKYMHMIPTNPSFGGIPETSTAHHIQMIPPPELTKEESPIDEAVAPVAEKVKGTGKKRQGPKLPKSPKAKKPKRGP HLPKDENAASVQRARVPKKTAEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCRTGMSMYPLPMSTKRRGA RIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLKTYWAKHGTNKFVTIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 288 | 288 | 2.1E-127 | – | |
PANTHER | 1 | 288 | 288 | 2.1E-127 | ||
SMART | 1 | 288 | 288 | 3.6E-164 | ||
Pfam | 1 | 288 | 288 | 6.9E-109 | ||
MobiDBLite | 133 | 176 | 44 | - | – | |
MobiDBLite | 141 | 158 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0188000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…